Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022236.1

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1024 .. 2275

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggcaagtttcatggagcaaatcagaggaggaagagccaagtttcacccgagtaggatagtcctcactgctggcgcaaccgcagcgaatgagctgttgactttcattcttgctgatcctggtgatgctttgctagttccaaccccatactacccaggatttgatagagatttgaggtggaggactggagtgaacattgtaccaatccactgtgacagctccaacggtttccagattactcctcaagctttagaagctgcatataatgaagcagaaacgatgaacatgaaagtgagaggggtcctaattacgaatccatccaacccattaggtgcaacaatccaaacggtagtccttcaacagattcttgattttgtcaccgaaaagaacatccatcttgtttcggatgaaatctactcaggatccgccttctcatcttccgaattcgtaagtatcgcagagattcttgaagcccagcagtataagaattctgaaagagttcacattgtttatagcctttccaaagaccttggtcttcccggttttcgagttggcacagtatactcatacaatgacaaagttgtaacaacagcaagaagaatgtctagcttcaccttaatatcttctcaaacacaacaactcttggcttccatgttatctgacaaggaattcaccgaaaattacatcaaaaccaatagagagaggctgaggaagagatatgatatgatcattgaaggcttaaagagcgccggaattgagtgcttgaagggtaatgctggcttgttttgctggatgaatttgggtccattcttggacacaccaacaagggaaggtgaactggctatttggaattctatgatgtatgaggtgaggctaaatatatctccaggttcttcttgccagtgctctgaaccaggttggttcagggtatgctttgccaacatgagtgagcagacacttgaagtggcactaaaaagaatacacaattttatgggacaaagagagagaaggcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

338

Amino Acids

37.98

Weight (kDa)

6.61

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	2 cut(s)	81, 426
AclWI	GGATC	3 cut(s)	110, 417, 430
AcsI	RAATTY	5 cut(s)	443, 487, 668, 796, 850
AfaI	GTAC	1 cut(s)	201
AgsI	TTSAA	5 cut(s)	359, 470, 734, 766, 962
AjnI	CCWGG	4 cut(s)	118, 154, 886, 913
AluBI	AGCT	5 cut(s)	94, 219, 248, 257, 609
AluI	AGCT	5 cut(s)	94, 219, 248, 257, 609
Alw21I	GWGCWC	1 cut(s)	908
AlwI	GGATC	3 cut(s)	110, 417, 430
Ama87I	CYCGRG	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	83, 257
ApoI	RAATTY	5 cut(s)	443, 487, 668, 796, 850
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	2 cut(s)	77, 749
AspS9I	GGNCC	2 cut(s)	301, 803
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	7 cut(s)	38, 134, 370, 604, 664, 845, 880
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	301, 803
BamHI	GGATCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	908
BbvCI	CCTCAGC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	95, 244
BccI	CCATC	2 cut(s)	325, 402
BciT130I	CCWGG	4 cut(s)	120, 156, 888, 915
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	540
BfaI	CTAG	3 cut(s)	134, 606, 1015
BfoI	RGCGCY	1 cut(s)	750
BisI	GCNGC	2 cut(s)	84, 258
BlsI	GCNGC	2 cut(s)	85, 259
Bme1390I	CCNGG	5 cut(s)	120, 156, 540, 888, 915
Bme18I	GGWCC	2 cut(s)	301, 803
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	301, 803
BmiI	GGNNCC	3 cut(s)	302, 424, 804
BmrFI	CCNGG	5 cut(s)	120, 156, 540, 888, 915
BmsI	GCATC	1 cut(s)	115
BoxI	GACNNNNGTC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	2 cut(s)	207, 870
Bpu10I	CCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	154, 529
Bse1I	ACTGG	3 cut(s)	190, 843, 901
BseBI	CCWGG	4 cut(s)	120, 156, 888, 915
BseDI	CCNNGG	2 cut(s)	154, 529
BseGI	GGATG	4 cut(s)	317, 390, 412, 798
BseMII	CTCAG	2 cut(s)	432, 698
BseNI	ACTGG	3 cut(s)	190, 843, 901
BseRI	GAGGAG	2 cut(s)	42, 231
BseXI	GCAGC	2 cut(s)	95, 244
BseYI	CCCAGC	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	908
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	540, 750
BslFI	GGGAC	1 cut(s)	1008
BsmFI	GGGAC	1 cut(s)	1008
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	908
Bsp143I	GATC	3 cut(s)	115, 422, 726
BspACI	CCGC	2 cut(s)	81, 426
BspCNI	CTCAG	2 cut(s)	431, 699
BspLI	GGNNCC	3 cut(s)	302, 424, 804
BspPI	GGATC	3 cut(s)	110, 417, 430
BspQI	GCTCTTC	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	190, 843, 901
BssECI	CCNNGG	2 cut(s)	154, 529
BssMI	GATC	3 cut(s)	115, 422, 726
BssNAI	GTATAC	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	529
Bst1107I	GTATAC	1 cut(s)	562
Bst2UI	CCWGG	4 cut(s)	120, 156, 888, 915
Bst4CI	ACNGT	4 cut(s)	212, 227, 349, 559
Bst6I	CTCTTC	2 cut(s)	28, 707
BstC8I	GCNNGC	2 cut(s)	73, 778
BstDEI	CTNAG	2 cut(s)	418, 707
BstF5I	GGATG	4 cut(s)	317, 390, 412, 798
BstH2I	RGCGCY	1 cut(s)	750
BstHHI	GCGC	2 cut(s)	77, 749
BstKTI	GATC	3 cut(s)	118, 425, 729
BstMBI	GATC	3 cut(s)	115, 422, 726
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 254, 744, 786
BstNI	CCWGG	4 cut(s)	120, 156, 888, 915
BstPAI	GACNNNNGTC	1 cut(s)	531
BstSCI	CCNGG	5 cut(s)	118, 154, 538, 886, 913
BstV1I	GCAGC	2 cut(s)	95, 244
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BstZ17I	GTATAC	1 cut(s)	562
BtsCI	GGATG	4 cut(s)	317, 390, 412, 798
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	66, 208, 908
Cac8I	GCNNGC	2 cut(s)	73, 778
CfoI	GCGC	2 cut(s)	77, 749
Cfr13I	GGNCC	2 cut(s)	301, 803
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	4 cut(s)	13, 286, 652, 943
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	2 cut(s)	418, 707
DpnI	GATC	3 cut(s)	117, 424, 728
DpnII	GATC	3 cut(s)	115, 422, 726
Eam1104I	CTCTTC	2 cut(s)	28, 707
EarI	CTCTTC	2 cut(s)	28, 707
EciI	GGCGGA	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	301, 803
Eco88I	CYCGRG	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRI	GAATTC	4 cut(s)	443, 487, 668, 850
EcoRII	CCWGG	4 cut(s)	118, 154, 886, 913
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	4 cut(s)	16, 289, 655, 946
FaqI	GGGAC	1 cut(s)	1008
FatI	CATG	4 cut(s)	12, 285, 651, 942
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	84, 258
FokI	GGATG	4 cut(s)	304, 377, 419, 805
Fsp4HI	GCNGC	2 cut(s)	84, 258
FspBI	CTAG	3 cut(s)	134, 606, 1015
GlaI	GCGC	2 cut(s)	76, 748
GluI	GCNGC	2 cut(s)	84, 258
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	2 cut(s)	207, 870
HaeII	RGCGCY	1 cut(s)	750
HapII	CCGG	2 cut(s)	540, 750
HhaI	GCGC	2 cut(s)	77, 749
Hin1II	CATG	4 cut(s)	16, 289, 655, 946
Hin6I	GCGC	2 cut(s)	75, 747
HinP1I	GCGC	2 cut(s)	75, 747
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	3 cut(s)	313, 364, 463
HpaII	CCGG	2 cut(s)	540, 750
HphI	GGTGA	7 cut(s)	38, 134, 370, 604, 664, 845, 880
Hpy166II	GTNNAC	5 cut(s)	99, 193, 502, 562, 836
Hpy188I	TCNGA	6 cut(s)	26, 406, 442, 493, 661, 910
Hpy188III	TCNNGA	4 cut(s)	232, 368, 420, 467
Hpy8I	GTNNAC	5 cut(s)	99, 193, 502, 562, 836
HpyAV	CCTTC	6 cut(s)	365, 439, 728, 760, 824, 1002
HpyCH4III	ACNGT	4 cut(s)	212, 227, 349, 559
HpyCH4V	TGCA	2 cut(s)	260, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 254, 744, 786
HpyF3I	CTNAG	2 cut(s)	418, 707
Hsp92II	CATG	4 cut(s)	16, 289, 655, 946
HspAI	GCGC	2 cut(s)	75, 747
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	3 cut(s)	115, 422, 726
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	16, 224
Lsp1109I	GCAGC	2 cut(s)	95, 244
LweI	GCATC	1 cut(s)	115
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	3 cut(s)	134, 606, 1015
MaeIII	GTNAC	3 cut(s)	212, 376, 583
MalI	GATC	3 cut(s)	117, 424, 728
MboI	GATC	3 cut(s)	115, 422, 726
MboII	GAAGA	7 cut(s)	45, 429, 527, 609, 615, 724, 885
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	908
MluCI	AATT	9 cut(s)	306, 443, 487, 668, 679, 753, 796, 850, 985
MmeI	TCCRAC	3 cut(s)	164, 246, 345
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	2 cut(s)	617, 740
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	2 cut(s)	540, 750
MspR9I	CCNGG	5 cut(s)	120, 156, 540, 888, 915
MvaI	CCWGG	4 cut(s)	120, 156, 888, 915
MwoI	GCNNNNNNNGC	4 cut(s)	83, 254, 744, 786
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	3 cut(s)	115, 422, 726
NlaIII	CATG	4 cut(s)	16, 289, 655, 946
NlaIV	GGNNCC	3 cut(s)	302, 424, 804
NmuCI	GTSAC	2 cut(s)	212, 376
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	313, 364, 463
PkrI	GCNGC	2 cut(s)	85, 259
PpuMI	RGGWCCY	1 cut(s)	301
PshAI	GACNNNNGTC	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	4 cut(s)	118, 154, 886, 913
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	4 cut(s)	118, 154, 886, 913
PspN4I	GGNNCC	3 cut(s)	302, 424, 804
PspPI	GGNCC	2 cut(s)	301, 803
PspPPI	RGGWCCY	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	617, 740
SatI	GCNGC	2 cut(s)	84, 258
Sau3AI	GATC	3 cut(s)	115, 422, 726
Sau96I	GGNCC	2 cut(s)	301, 803
ScrFI	CCNGG	5 cut(s)	120, 156, 540, 888, 915
SduI	GDGCHC	1 cut(s)	908
SexAI	ACCWGGT	1 cut(s)	913
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	2 cut(s)	301, 803
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	9 cut(s)	306, 443, 487, 668, 679, 753, 796, 850, 985
SsiI	CCGC	2 cut(s)	81, 426
SspMI	CTAG	3 cut(s)	134, 606, 1015
StyD4I	CCNGG	5 cut(s)	118, 154, 538, 886, 913
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	4 cut(s)	212, 227, 349, 559
TaqI	TCGA	1 cut(s)	547
TasI	AATT	9 cut(s)	306, 443, 487, 668, 679, 753, 796, 850, 985
TfiI	GAWTC	3 cut(s)	313, 364, 463
Tru1I	TTAA	2 cut(s)	617, 740
Tru9I	TTAA	2 cut(s)	617, 740
TscAI	CASTG	3 cut(s)	73, 215, 908
TseFI	GTSAC	2 cut(s)	212, 376
TseI	GCWGC	2 cut(s)	83, 257
Tsp45I	GTSAC	2 cut(s)	212, 376
TspDTI	ATGAA	6 cut(s)	94, 282, 296, 302, 423, 809
TspRI	CASTG	3 cut(s)	73, 215, 908
VpaK11BI	GGWCC	2 cut(s)	301, 803
XapI	RAATTY	5 cut(s)	443, 487, 668, 796, 850
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	3 cut(s)	134, 606, 1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.