Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

5950346 .. 5952144

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1073900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCTATAGAGATTAAGCAGCAGCAGCCTTCTGTTGGGCTATCAAAAATAGCTGTTTCTGATACTCATGGAGAAGACTCTCCATACTTTGCAGGATGGAAAGCTTATGATCAAAACCCTTATCATGAATCAAGCAATCCATCTGGAGTCATACAGATGGGACTAGCTGAAAACCAAGTTTCGTTTGATCTGTTGGAAAAGTACTTGGAAGAAAATTCAGAAGCCTCCAACTGGGGTTCAAAGGGATCAAAAGGAGTGTCTGGCTTTAGAGAAAATGCCTTGTTTCAAGACTACCATGGGCTTTTGTCTTTTAGAAAGGCAATGGCAAGTTTTATGGAGCAAATTAGAGGAGGAAGAGCGAAAATTGACCCTGCTAGAGTAGTCTTAACAGCAGGTGCAACTGCAGCCAATGAGCTGTTGACTTTCATCATAGCTGATCCTGGTGATGCTTTGCTTGTTCCAACACCATACTATCCAGGATTTGATAGAGATTTGAGGTGGAGGACTGGTGTGAACATTGTGCCAATCCACTGTGAAAGCTCAAACAAGTTCCAGATTACTCCAGAAGCGTTAGAAGCTGCACACAAAGAGGCAGAAGACAAGAACATGAGAGTGAGAGGGGTACTAATCACAAATCCATCAAACCCACTTGGTGCAACAATCCAAAGGGCAGTCCTTGAACAGATTCTTGATTTCGTCACAAAAAAAAACATCCATCTCGTTTCTGATGAAATCTACTCAGGATCCGCCTTCTCATCCTCCGAATTCATTAGTGTGGCAGAAATTCTTGAAGACAGGCAGTACAAGGATGCAGAAAGAGTCCACATTGTTTATAGTCTATCCAAAGATCTTGGCCTTCCAGGTTTTCGAGTTGGCACCGTGTACTCTTACAATGATAAGGTTGTGACAACAGCAAGAAGGATGTCAAGCTTCACCCTAATATCTTCTCAAACACAACATCTCTTGGCTTCCATGTTATCTGACAAGGAATTCACTGAAAATTACATAAATACAAACAGAGAGAGACTGAGGAAGAGATATGATATGATCGTCGAGGGTTTGAAGAAATCGGGGATCGAGTGTTTGAAAGGAAATGCTGGGTTGTTTTGCTGGATGAATTTAAGTCCATTTTTGGATGAACCTACAAGAGAAGGTGAACTGACTCTTTGGGATTCCATGCTGCATGAAGTGAAGCTAAATATATCTCCAGGTTCTTCTTGTCATTGCTCTGAGCCAGGTTGGTTCAGGGTGTGCTTTGCCAACATGAGTGAGCAGACACTTGGGATTGCATTGACAAGAATACATAATTTCATGGAAAAGAAAGAGAGGGCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

446

Amino Acids

49.81

Weight (kDa)

5.84

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	51 - 434	3.6e-97	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	875
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	5 cut(s)	253, 431, 738, 751, 1082
AcsI	RAATTY	5 cut(s)	214, 764, 783, 989, 1117
AdeI	CACNNNGTG	1 cut(s)	653
AfaI	GTAC	4 cut(s)	203, 624, 803, 884
AfiI	CCNNNNNNNGG	2 cut(s)	35, 231
AgsI	TTSAA	6 cut(s)	240, 287, 680, 791, 1063, 1087
AjnI	CCWGG	5 cut(s)	439, 475, 859, 1207, 1234
Alw26I	GTCTC	1 cut(s)	1018
AlwI	GGATC	5 cut(s)	253, 431, 738, 751, 1082
AoxI	GGCC	1 cut(s)	853
ApeKI	GCWGC	6 cut(s)	19, 22, 25, 404, 578, 1180
ApoI	RAATTY	5 cut(s)	214, 764, 783, 989, 1117
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
Asp700I	GAANNNNTTC	1 cut(s)	684
AsuHPI	GGTGA	3 cut(s)	455, 925, 1166
AsuNHI	GCTAGC	1 cut(s)	1331
BamHI	GGATCC	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	875
BbsI	GAAGAC	3 cut(s)	81, 603, 798
BbvI	GCAGC	6 cut(s)	31, 34, 37, 416, 565, 1167
BccI	CCATC	5 cut(s)	90, 148, 151, 646, 723
BciT130I	CCWGG	5 cut(s)	441, 477, 861, 1209, 1236
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	1018
BfaI	CTAG	3 cut(s)	164, 375, 1332
BfmI	CTRYAG	2 cut(s)	6, 402
BfuAI	ACCTGC	1 cut(s)	383
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	6 cut(s)	20, 23, 26, 405, 579, 1181
BlsI	GCNGC	6 cut(s)	21, 24, 27, 406, 580, 1182
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	5 cut(s)	441, 477, 861, 1209, 1236
BmiI	GGNNCC	2 cut(s)	745, 877
BmrFI	CCNGG	5 cut(s)	441, 477, 861, 1209, 1236
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	436, 799
BmtI	GCTAGC	1 cut(s)	1335
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	3 cut(s)	81, 603, 798
BpmI	CTGGAG	3 cut(s)	165, 546, 1191
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 231
Bse1I	ACTGG	2 cut(s)	236, 511
Bse3DI	GCAATG	2 cut(s)	327, 1222
BseBI	CCWGG	5 cut(s)	441, 477, 861, 1209, 1236
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	7 cut(s)	101, 711, 755, 814, 927, 1119, 1141
BseLI	CCNNNNNNNGG	2 cut(s)	35, 231
BseMI	GCAATG	2 cut(s)	327, 1222
BseMII	CTCAG	3 cut(s)	753, 1019, 1221
BseNI	ACTGG	2 cut(s)	236, 511
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	6 cut(s)	31, 34, 37, 416, 565, 1167
BseYI	CCCAGC	1 cut(s)	1097
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	855
BshNI	GGYRCC	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	35, 231
BsmAI	GTCTC	1 cut(s)	1018
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	855
Bsp143I	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	1 cut(s)	747
BspANI	GGCC	1 cut(s)	855
BspCNI	CTCAG	3 cut(s)	752, 1020, 1222
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	745, 877
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	383
BspOI	GCTAGC	1 cut(s)	1335
BspPI	GGATC	5 cut(s)	253, 431, 738, 751, 1082
BspQI	GCTCTTC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	875
BsrDI	GCAATG	2 cut(s)	327, 1222
BsrI	ACTGG	2 cut(s)	236, 511
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	5 cut(s)	441, 477, 861, 1209, 1236
Bst4CI	ACNGT	2 cut(s)	533, 880
Bst6I	CTCTTC	2 cut(s)	349, 1028
BstC8I	GCNNGC	1 cut(s)	1333
BstDEI	CTNAG	3 cut(s)	739, 1028, 1230
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	7 cut(s)	101, 711, 755, 814, 927, 1119, 1141
BstKTI	GATC	8 cut(s)	112, 190, 248, 439, 746, 850, 1050, 1077
BstMAI	GTCTC	1 cut(s)	1018
BstMBI	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 404, 575
BstNI	CCWGG	5 cut(s)	441, 477, 861, 1209, 1236
BstSCI	CCNGG	5 cut(s)	439, 475, 859, 1207, 1234
BstSFI	CTRYAG	2 cut(s)	6, 402
BstV1I	GCAGC	6 cut(s)	31, 34, 37, 416, 565, 1167
BstV2I	GAAGAC	3 cut(s)	81, 603, 798
BstX2I	RGATCY	2 cut(s)	743, 847
BstYI	RGATCY	2 cut(s)	743, 847
BsuRI	GGCC	1 cut(s)	855
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	7 cut(s)	101, 711, 755, 814, 927, 1119, 1141
BtsIMutI	CAGTG	2 cut(s)	529, 993
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	1333
CciI	TCATGA	1 cut(s)	124
Csp6I	GTAC	4 cut(s)	202, 623, 802, 883
CviAII	CATG	9 cut(s)	68, 125, 296, 607, 973, 1177, 1184, 1264, 1312
CviQI	GTAC	4 cut(s)	202, 623, 802, 883
DdeI	CTNAG	3 cut(s)	739, 1028, 1230
DpnI	GATC	8 cut(s)	111, 189, 247, 438, 745, 849, 1049, 1076
DpnII	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
DraIII	CACNNNGTG	1 cut(s)	653
Eam1104I	CTCTTC	2 cut(s)	349, 1028
EarI	CTCTTC	2 cut(s)	349, 1028
EciI	GGCGGA	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	295
EcoRI	GAATTC	2 cut(s)	764, 989
EcoRII	CCWGG	5 cut(s)	439, 475, 859, 1207, 1234
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	9 cut(s)	71, 128, 299, 610, 976, 1180, 1187, 1267, 1315
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	9 cut(s)	67, 124, 295, 606, 972, 1176, 1183, 1263, 1311
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	6 cut(s)	20, 23, 26, 405, 579, 1181
FokI	GGATG	7 cut(s)	108, 698, 742, 821, 934, 1126, 1148
Fsp4HI	GCNGC	6 cut(s)	20, 23, 26, 405, 579, 1181
FspBI	CTAG	3 cut(s)	164, 375, 1332
GluI	GCNGC	6 cut(s)	20, 23, 26, 405, 579, 1181
GsaI	CCCAGC	1 cut(s)	1101
GsuI	CTGGAG	3 cut(s)	165, 546, 1191
HaeIII	GGCC	1 cut(s)	855
Hin1II	CATG	9 cut(s)	71, 128, 299, 610, 976, 1180, 1187, 1267, 1315
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	2 cut(s)	102, 928
HinfI	GANTC	7 cut(s)	77, 128, 147, 685, 819, 1162, 1172
HphI	GGTGA	3 cut(s)	455, 925, 1166
Hpy166II	GTNNAC	5 cut(s)	420, 514, 823, 883, 1157
Hpy188I	TCNGA	6 cut(s)	61, 220, 727, 763, 982, 1231
Hpy188III	TCNNGA	8 cut(s)	125, 144, 287, 553, 563, 689, 741, 788
Hpy8I	GTNNAC	5 cut(s)	420, 514, 823, 883, 1157
Hpy99I	CGWCG	1 cut(s)	1055
HpyAV	CCTTC	5 cut(s)	39, 760, 866, 912, 1145
HpyCH4III	ACNGT	2 cut(s)	533, 880
HpyCH4V	TGCA	8 cut(s)	92, 398, 404, 581, 656, 812, 1183, 1289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 404, 575
HpyF3I	CTNAG	3 cut(s)	739, 1028, 1230
Hsp92II	CATG	9 cut(s)	71, 128, 299, 610, 976, 1180, 1187, 1267, 1315
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
LguI	GCTCTTC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	6 cut(s)	31, 34, 37, 416, 565, 1167
LweI	GCATC	2 cut(s)	436, 799
MaeI	CTAG	3 cut(s)	164, 375, 1332
MaeIII	GTNAC	2 cut(s)	697, 904
MalI	GATC	8 cut(s)	111, 189, 247, 438, 745, 849, 1049, 1076
MboI	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
MboII	GAAGA	9 cut(s)	86, 221, 366, 608, 803, 936, 1045, 1075, 1206
MflI	RGATCY	2 cut(s)	743, 847
MluCI	AATT	9 cut(s)	214, 342, 363, 764, 783, 989, 1000, 1117, 1306
MlyI	GAGTC	4 cut(s)	71, 156, 828, 1156
MmeI	TCCRAC	3 cut(s)	174, 252, 485
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	3 cut(s)	15, 386, 1121
MslI	CAYNNNNRTG	3 cut(s)	155, 611, 773
MspR9I	CCNGG	5 cut(s)	441, 477, 861, 1209, 1236
MvaI	CCWGG	5 cut(s)	441, 477, 861, 1209, 1236
MwoI	GCNNNNNNNGC	3 cut(s)	25, 404, 575
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
NheI	GCTAGC	1 cut(s)	1331
NlaIII	CATG	9 cut(s)	71, 128, 299, 610, 976, 1180, 1187, 1267, 1315
NlaIV	GGNNCC	2 cut(s)	745, 877
NmuCI	GTSAC	2 cut(s)	697, 904
PagI	TCATGA	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	128, 685, 1172
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	6 cut(s)	21, 24, 27, 406, 580, 1182
PleI	GAGTC	4 cut(s)	71, 155, 827, 1156
PpsI	GAGTC	4 cut(s)	71, 155, 827, 1156
Psp6I	CCWGG	5 cut(s)	439, 475, 859, 1207, 1234
PspFI	CCCAGC	1 cut(s)	1097
PspGI	CCWGG	5 cut(s)	439, 475, 859, 1207, 1234
PspN4I	GGNNCC	2 cut(s)	745, 877
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	743, 847
RsaI	GTAC	4 cut(s)	203, 624, 803, 884
RsaNI	GTAC	4 cut(s)	202, 623, 802, 883
RseI	CAYNNNNRTG	3 cut(s)	155, 611, 773
SapI	GCTCTTC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	15, 386, 1121
SatI	GCNGC	6 cut(s)	20, 23, 26, 405, 579, 1181
Sau3AI	GATC	8 cut(s)	109, 187, 245, 436, 743, 847, 1047, 1074
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	4 cut(s)	71, 156, 828, 1156
ScrFI	CCNGG	5 cut(s)	441, 477, 861, 1209, 1236
SfaNI	GCATC	2 cut(s)	436, 799
SfcI	CTRYAG	2 cut(s)	6, 402
SmiMI	CAYNNNNRTG	3 cut(s)	155, 611, 773
Sse9I	AATT	9 cut(s)	214, 342, 363, 764, 783, 989, 1000, 1117, 1306
SsiI	CCGC	1 cut(s)	747
SspMI	CTAG	3 cut(s)	164, 375, 1332
StyD4I	CCNGG	5 cut(s)	439, 475, 859, 1207, 1234
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	533, 880
TaqI	TCGA	3 cut(s)	868, 1053, 1077
TasI	AATT	9 cut(s)	214, 342, 363, 764, 783, 989, 1000, 1117, 1306
TatI	WGTACW	3 cut(s)	201, 801, 882
TfiI	GAWTC	3 cut(s)	128, 685, 1172
Tru1I	TTAA	3 cut(s)	15, 386, 1121
Tru9I	TTAA	3 cut(s)	15, 386, 1121
TscAI	CASTG	2 cut(s)	536, 1000
TseFI	GTSAC	2 cut(s)	697, 904
TseI	GCWGC	6 cut(s)	19, 22, 25, 404, 578, 1180
Tsp45I	GTSAC	2 cut(s)	697, 904
TspDTI	ATGAA	8 cut(s)	141, 415, 744, 757, 1130, 1152, 1200, 1300
TspRI	CASTG	2 cut(s)	536, 1000
XapI	RAATTY	5 cut(s)	214, 764, 783, 989, 1117
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	3 cut(s)	164, 375, 1332
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.