Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

16180415 .. 16183020

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1203500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCTATAGATATTGAGCAGCGGCAGCAGCCTTCTCCTGGGCTATCAAAAATAGCTGTTTCTGATACTCATGGAGAAGACTCTCCATACTTTGCAGGATGGAAAGCTTATGATGAAAACCCTTATCATGAGTCAAGCAACCCATCTGGAGTCATACAAATGGGACTTGCGGAAAATCAAGTTTCGTTTGATCTGTTGGAAAAGCACTTGGAAGAAAATTCAGAAGCCTCCAACTGGGGTTCAAAGGGATCAAAAGGAGTGTCTGGCTTTAGAGAAAATGCCTTATTTCAAGACTACCATGGCCTTTTGTCTTTCAGAAAGGCAATGGCAAATTTTATGGAACAAATTAGAGGAGGAAGAGCCAAATTTGACCCTGTTAGGGTAGTCTTAACGGCAGGTGCAACTGCAGCAAATGAGCTACTGACTTTCATCATAGCTGATCCCGGTGATGCTTTGCTTGTTCCAACCCCATATTATCCAGGGTTTGATAGAGATTTGAGGTGGAGGACTGGTGTGAACATTGTGCCAATTCACTGTGAAAGCTCAAACAACTTCCAGATTACTCCTCAAGCTTTAGAAGCTGCATACAAAGAGGCAGAAGCCAAGAACATGAGAGTGAGAGGGGTACTAATCACAAATCCATCAAACCCACTTGGTGCAACAATCCAAAGGGCAGTCCTTGAAGAGATTCTTGATTTCGTCACCCAAAAAAACATCCATCTTGTCTCTGATGAAATCTACTCGGGATCTGCCTTCTCATCCTCCGAATTCATTAGTGTGGCAGAAATTCTTGAAGACAGGCAGTACAAGGATGCAGAAAGAGTTCACATTGTTTATAGTCTATCCAAAGATCTTGGCCTTCCAGGCTTTCGAGTTGGCACTGTGTACTCTTACAATGACAAGGTTGTGACAACAGCAAGAAGAATGTCTAGCTTCACCTTGATATCTTCTCAAACACAACATCTCTTGGCTTCCATGTTATCTGACAAGGAATTCACTGGAAACTACATAAAGACAAATAGAGAGAGACTGAGGACGAGATATGATATGATCATCGAGGGTTTGAAAAAATCGGGGATCGAGTGTTTGAAAGGAAATGCTGGGTTGTTTTGCTGGATGAATTTAAGTCCATTTTTGGACGAACCAACAAGAGAATGTGAACTGACTCTTTGGGATTCCATGCTGCATGAAGTGAAGCTAAATATATCTCCAGGTTCTTCTTGTCATTGCTCTGAGCCAGGCTGGTTTAGGGTGTGCTTTGCCAACATGAGTGAGCAGACACTTGGGATTGCATTAACAAGAATACATAATTTCATGGAAAAGAGAGAGCGGGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

447

Amino Acids

50.0

Weight (kDa)

5.65

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	52 - 435	9.2e-98	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	386
AccBSI	CCGCTC	1 cut(s)	1330
AciI	CCGC	3 cut(s)	22, 170, 1330
AclWI	GGATC	4 cut(s)	256, 434, 754, 1085
AcsI	RAATTY	7 cut(s)	217, 331, 365, 767, 786, 992, 1120
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	3 cut(s)	627, 806, 887
AfiI	CCNNNNNNNGG	3 cut(s)	38, 234, 379
AgsI	TTSAA	6 cut(s)	243, 290, 683, 794, 1066, 1090
AjnI	CCWGG	5 cut(s)	37, 478, 862, 1210, 1237
AluBI	AGCT	9 cut(s)	56, 107, 418, 437, 543, 572, 581, 933, 1198
AluI	AGCT	9 cut(s)	56, 107, 418, 437, 543, 572, 581, 933, 1198
Alw26I	GTCTC	2 cut(s)	730, 1021
AlwI	GGATC	4 cut(s)	256, 434, 754, 1085
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	2 cut(s)	301, 856
ApeKI	GCWGC	6 cut(s)	19, 25, 28, 407, 581, 1183
ApoI	RAATTY	7 cut(s)	217, 331, 365, 767, 786, 992, 1120
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	2 cut(s)	687, 822
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	3 cut(s)	458, 694, 928
AvaI	CYCGRG	1 cut(s)	742
BbsI	GAAGAC	2 cut(s)	84, 801
BbvI	GCAGC	6 cut(s)	31, 37, 40, 419, 568, 1170
BccI	CCATC	4 cut(s)	93, 151, 649, 726
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	5 cut(s)	39, 480, 864, 1212, 1239
BclI	TGATCA	1 cut(s)	1050
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	730, 1021
BfaI	CTAG	2 cut(s)	930, 1339
BfmI	CTRYAG	2 cut(s)	6, 405
BfuAI	ACCTGC	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	864
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 582, 1184
BlsI	GCNGC	7 cut(s)	21, 24, 27, 30, 409, 583, 1185
Bme1390I	CCNGG	6 cut(s)	39, 444, 480, 864, 1212, 1239
BmeT110I	CYCGRG	1 cut(s)	742
BmrFI	CCNGG	6 cut(s)	39, 444, 480, 864, 1212, 1239
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	439, 802
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	2 cut(s)	84, 801
BpmI	CTGGAG	2 cut(s)	168, 1194
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	38, 298, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 234, 379
Bse1I	ACTGG	3 cut(s)	239, 514, 1003
Bse3DI	GCAATG	2 cut(s)	330, 1225
BseBI	CCWGG	5 cut(s)	39, 480, 864, 1212, 1239
BseDI	CCNNGG	3 cut(s)	38, 298, 479
BseGI	GGATG	5 cut(s)	104, 714, 758, 817, 1122
BseLI	CCNNNNNNNGG	3 cut(s)	38, 234, 379
BseMI	GCAATG	2 cut(s)	330, 1225
BseMII	CTCAG	2 cut(s)	1022, 1224
BseNI	ACTGG	3 cut(s)	239, 514, 1003
BseRI	GAGGAG	2 cut(s)	366, 555
BseXI	GCAGC	6 cut(s)	31, 37, 40, 419, 568, 1170
BseYI	CCCAGC	1 cut(s)	1100
BshFI	GGCC	2 cut(s)	303, 858
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	38, 234, 379
BsmAI	GTCTC	2 cut(s)	730, 1021
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	303, 858
BsoBI	CYCGRG	1 cut(s)	742
Bsp143I	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	3 cut(s)	22, 170, 1330
BspANI	GGCC	2 cut(s)	303, 858
BspCNI	CTCAG	2 cut(s)	1023, 1225
BspHI	TCATGA	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	4 cut(s)	256, 434, 754, 1085
BspQI	GCTCTTC	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	1330
BsrDI	GCAATG	2 cut(s)	330, 1225
BsrI	ACTGG	3 cut(s)	239, 514, 1003
BssECI	CCNNGG	3 cut(s)	38, 298, 479
BssMI	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	5 cut(s)	39, 480, 864, 1212, 1239
Bst4CI	ACNGT	2 cut(s)	536, 883
Bst6I	CTCTTC	2 cut(s)	352, 678
BstC8I	GCNNGC	2 cut(s)	1332, 1336
BstDEI	CTNAG	2 cut(s)	1031, 1233
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	5 cut(s)	104, 714, 758, 817, 1122
BstKTI	GATC	7 cut(s)	193, 251, 442, 749, 853, 1053, 1080
BstMAI	GTCTC	2 cut(s)	730, 1021
BstMBI	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 28, 407, 578, 864
BstNI	CCWGG	5 cut(s)	39, 480, 864, 1212, 1239
BstSCI	CCNGG	6 cut(s)	37, 442, 478, 862, 1210, 1237
BstSFI	CTRYAG	2 cut(s)	6, 405
BstV1I	GCAGC	6 cut(s)	31, 37, 40, 419, 568, 1170
BstV2I	GAAGAC	2 cut(s)	84, 801
BstX2I	RGATCY	2 cut(s)	746, 850
BstYI	RGATCY	2 cut(s)	746, 850
BsuRI	GGCC	2 cut(s)	303, 858
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	5 cut(s)	104, 714, 758, 817, 1122
BtsIMutI	CAGTG	3 cut(s)	532, 879, 996
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	2 cut(s)	1332, 1336
CciI	TCATGA	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	626, 805, 886
CviAII	CATG	9 cut(s)	71, 128, 299, 610, 976, 1180, 1187, 1267, 1315
CviQI	GTAC	3 cut(s)	626, 805, 886
DdeI	CTNAG	2 cut(s)	1031, 1233
DpnI	GATC	7 cut(s)	192, 250, 441, 748, 852, 1052, 1079
DpnII	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
DraIII	CACNNNGTG	1 cut(s)	656
Eam1104I	CTCTTC	2 cut(s)	352, 678
EarI	CTCTTC	2 cut(s)	352, 678
Eco130I	CCWWGG	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	945
Eco88I	CYCGRG	1 cut(s)	742
EcoRI	GAATTC	2 cut(s)	767, 992
EcoRII	CCWGG	5 cut(s)	37, 478, 862, 1210, 1237
EcoRV	GATATC	1 cut(s)	945
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	9 cut(s)	74, 131, 302, 613, 979, 1183, 1190, 1270, 1318
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	9 cut(s)	70, 127, 298, 609, 975, 1179, 1186, 1266, 1314
FauI	CCCGC	1 cut(s)	1323
FbaI	TGATCA	1 cut(s)	1050
Fnu4HI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 582, 1184
FokI	GGATG	5 cut(s)	111, 701, 745, 824, 1129
Fsp4HI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 582, 1184
FspBI	CTAG	2 cut(s)	930, 1339
GluI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 582, 1184
GsaI	CCCAGC	1 cut(s)	1104
GsuI	CTGGAG	2 cut(s)	168, 1194
HaeIII	GGCC	2 cut(s)	303, 858
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	9 cut(s)	74, 131, 302, 613, 979, 1183, 1190, 1270, 1318
HindIII	AAGCTT	2 cut(s)	105, 570
HinfI	GANTC	6 cut(s)	80, 131, 150, 688, 1165, 1175
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	3 cut(s)	458, 694, 928
Hpy166II	GTNNAC	4 cut(s)	517, 826, 886, 1160
Hpy188I	TCNGA	7 cut(s)	64, 223, 317, 730, 766, 985, 1234
Hpy188III	TCNNGA	7 cut(s)	128, 147, 290, 556, 692, 744, 791
Hpy8I	GTNNAC	4 cut(s)	517, 826, 886, 1160
HpyAV	CCTTC	3 cut(s)	42, 763, 869
HpyCH4III	ACNGT	2 cut(s)	536, 883
HpyCH4V	TGCA	8 cut(s)	95, 401, 407, 584, 659, 815, 1186, 1292
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 28, 407, 578, 864
HpyF3I	CTNAG	2 cut(s)	1031, 1233
Hsp92II	CATG	9 cut(s)	74, 131, 302, 613, 979, 1183, 1190, 1270, 1318
Ksp22I	TGATCA	1 cut(s)	1050
Kzo9I	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
LguI	GCTCTTC	1 cut(s)	352
Lsp1109I	GCAGC	6 cut(s)	31, 37, 40, 419, 568, 1170
LweI	GCATC	2 cut(s)	439, 802
MaeI	CTAG	2 cut(s)	930, 1339
MaeIII	GTNAC	2 cut(s)	700, 907
MalI	GATC	7 cut(s)	192, 250, 441, 748, 852, 1052, 1079
MbiI	CCGCTC	1 cut(s)	1330
MboI	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
MboII	GAAGA	8 cut(s)	89, 224, 369, 695, 806, 933, 939, 1209
MflI	RGATCY	2 cut(s)	746, 850
MlyI	GAGTC	4 cut(s)	74, 140, 159, 1159
MmeI	TCCRAC	3 cut(s)	177, 255, 488
MroXI	GAANNNNTTC	2 cut(s)	687, 822
MseI	TTAA	3 cut(s)	389, 1124, 1295
MslI	CAYNNNNRTG	3 cut(s)	158, 614, 776
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	6 cut(s)	39, 444, 480, 864, 1212, 1239
MvaI	CCWGG	5 cut(s)	39, 480, 864, 1212, 1239
MwoI	GCNNNNNNNGC	5 cut(s)	25, 28, 407, 578, 864
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
NlaIII	CATG	9 cut(s)	74, 131, 302, 613, 979, 1183, 1190, 1270, 1318
NmuCI	GTSAC	2 cut(s)	700, 907
PagI	TCATGA	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	687, 822
PfeI	GAWTC	2 cut(s)	688, 1175
PkrI	GCNGC	7 cut(s)	21, 24, 27, 30, 409, 583, 1185
PleI	GAGTC	4 cut(s)	74, 139, 158, 1159
PpsI	GAGTC	4 cut(s)	74, 139, 158, 1159
Psp6I	CCWGG	5 cut(s)	37, 478, 862, 1210, 1237
PspFI	CCCAGC	1 cut(s)	1100
PspGI	CCWGG	5 cut(s)	37, 478, 862, 1210, 1237
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	746, 850
RsaI	GTAC	3 cut(s)	627, 806, 887
RsaNI	GTAC	3 cut(s)	626, 805, 886
RseI	CAYNNNNRTG	3 cut(s)	158, 614, 776
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	389, 1124, 1295
SatI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 582, 1184
Sau3AI	GATC	7 cut(s)	190, 248, 439, 746, 850, 1050, 1077
SchI	GAGTC	4 cut(s)	74, 140, 159, 1159
ScrFI	CCNGG	6 cut(s)	39, 444, 480, 864, 1212, 1239
SfaNI	GCATC	2 cut(s)	439, 802
SfcI	CTRYAG	2 cut(s)	6, 405
SmiMI	CAYNNNNRTG	3 cut(s)	158, 614, 776
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
SsiI	CCGC	3 cut(s)	22, 170, 1330
SspMI	CTAG	2 cut(s)	930, 1339
StyD4I	CCNGG	6 cut(s)	37, 442, 478, 862, 1210, 1237
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	536, 883
TaqI	TCGA	3 cut(s)	871, 1056, 1080
TatI	WGTACW	2 cut(s)	804, 885
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	688, 1175
Tru1I	TTAA	3 cut(s)	389, 1124, 1295
Tru9I	TTAA	3 cut(s)	389, 1124, 1295
TscAI	CASTG	3 cut(s)	539, 886, 1003
TseFI	GTSAC	2 cut(s)	700, 907
TseI	GCWGC	6 cut(s)	19, 25, 28, 407, 581, 1183
Tsp45I	GTSAC	2 cut(s)	700, 907
TspDTI	ATGAA	7 cut(s)	129, 418, 747, 760, 1133, 1203, 1303
TspRI	CASTG	3 cut(s)	539, 886, 1003
XapI	RAATTY	7 cut(s)	217, 331, 365, 767, 786, 992, 1120
XmnI	GAANNNNTTC	2 cut(s)	687, 822
XspI	CTAG	2 cut(s)	930, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.