Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

5933931 .. 5935947

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1073800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGTATAGAGATTGAGCAGCAGCAGCAGCCTTCTGTTGGGCTATCAAAAATAGCTGTTTCTAATACTCATGGAGAAGACTCTCCATACTTTGCAGGCTGGAAAGCATATGACGAAAACCCTTACGATGAATCAAGCAACCCATCAGGAGTCATACAGATGGGACTGGCTGAGAATCAAGTTTCATTCGATGTGTTGGAAAAATACTTGGAAGAGCATTCAGAAGCCTCCAACTGGGGAGCAAAGGCATCAAAAGGAGTGTCTGGCTTTAGAGAAAATGCCTTGTTTCAAGATTACCATGGTCTTTTGTCTTTCAGAAAGGCAATGGCAAGTTTCATGGAACAAATAAGAGGAGGAAGGGCCAAATTTGACCCTGATAGAATAGTCCTAACTGCAGGGGCAACTGCAGCCAATGAGCTATTAACTTTCATTATAGCTGATCCTGGTGATGCTTTGCTTGTTCCAACCCCATACTATCCAGGATTTGATAGAGATTTGAGGTGGAGGACTGGTGTGAATATTGTGCCAATCCACTGTGGCAGCTCAAACAATTTCCAAATCACTCCTCAAGCTTTGGATGCTGCATACAAAGAGGCAGAAGCCAAGAACATGAGAGTGAGAGGTGTACTCATCACAAATCCTTCCAACCCTTTAGGTGCAACAGTCCAAAGGGCAGTCCTTGAAGAGATTCTTGATTTTGTCACCCGGGAAAACATCCATCTTGTCTCTGATGAAATTTACTCGGGCTCTGCCTTCTCATCCACCGAGTTCATAAGCATTGCAGAGATTCTTGAAGACAGGCAGTACAAGGATGCAGAAAGAGTCCACATAGTTTATAGCCTCTCTAAAGACCTAGGCCTTCCGGGTTTTCGTATTGGCACCGTGTACTCTTACAACGACAGGGTTGTGACAACAGCAAGAAGGATGTCTAGCTTCACCCTGATATCTTCTCAGACACAACATCTCTTGGCTTCCATGTTGTCTGAGAAGGAATTCACTGAAAATTACATAAAGACAAATAGAGAGAGACTGAGGAAGAGATACGACATGATAATCGAGGGTTTGAAGAAATCGGGGATTGAGTGTTTGACAGGCAATGCCGGGTTGTTTTGCTGGATGAATTTAAGTCCACTTTTGGAGAAACCAACAAGAGAAGGTGAATTGGCTCTTTGGGACTCTATGCTGTATGAAGTGAAGTTAAATATATCTCCTGGTTCTTCATGCCACTGCTCTGAACCAGGCTGGTTTAGGGTTTGTTTTGCAAACATGAGTGAGCAGACACTTGAAGTTGCTCTTAAGAGAATACATAATTTTATGGAACAAAGAGAGAGAAGCAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

448

Amino Acids

50.27

Weight (kDa)

5.46

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	52 - 435	3.1e-98	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	878
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	4 cut(s)	365, 735, 992, 1120
AfaI	GTAC	3 cut(s)	627, 806, 887
AfiI	CCNNNNNNNGG	2 cut(s)	38, 234
AflII	CTTAAG	1 cut(s)	1295
AgsI	TTSAA	5 cut(s)	290, 683, 794, 1066, 1286
AjnI	CCWGG	4 cut(s)	442, 478, 1210, 1237
AluBI	AGCT	6 cut(s)	56, 418, 437, 543, 572, 933
AluI	AGCT	6 cut(s)	56, 418, 437, 543, 572, 933
Alw26I	GTCTC	2 cut(s)	730, 1021
AlwI	GGATC	1 cut(s)	434
Ama87I	CYCGRG	2 cut(s)	705, 742
AoxI	GGCC	2 cut(s)	360, 856
ApeKI	GCWGC	7 cut(s)	19, 22, 25, 28, 407, 540, 581
ApoI	RAATTY	4 cut(s)	365, 735, 992, 1120
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	2 cut(s)	687, 992
AspA2I	CCTAGG	1 cut(s)	853
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	4 cut(s)	706, 707, 864, 1102
AsuHPI	GGTGA	4 cut(s)	458, 694, 928, 1169
AvaI	CYCGRG	2 cut(s)	705, 742
AvrII	CCTAGG	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	878
BanII	GRGCYC	1 cut(s)	749
BbsI	GAAGAC	2 cut(s)	84, 801
BbvI	GCAGC	7 cut(s)	31, 34, 37, 40, 419, 552, 568
BccI	CCATC	3 cut(s)	151, 154, 726
BciT130I	CCWGG	4 cut(s)	444, 480, 1212, 1239
BcnI	CCSGG	4 cut(s)	706, 707, 864, 1102
BcoDI	GTCTC	2 cut(s)	730, 1021
BfaI	CTAG	2 cut(s)	854, 930
BfmI	CTRYAG	2 cut(s)	393, 405
BfrI	CTTAAG	1 cut(s)	1295
BisI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 541, 582
BlnI	CCTAGG	1 cut(s)	853
BlsI	GCNGC	7 cut(s)	21, 24, 27, 30, 409, 542, 583
Bme1390I	CCNGG	8 cut(s)	444, 480, 706, 707, 864, 1102, 1212, 1239
BmeT110I	CYCGRG	2 cut(s)	705, 742
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	880
BmrFI	CCNGG	8 cut(s)	444, 480, 706, 707, 864, 1102, 1212, 1239
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	4 cut(s)	257, 439, 568, 802
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	2 cut(s)	84, 801
BplI	GAGNNNNNCTC	2 cut(s)	612, 644
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	4 cut(s)	706, 707, 864, 1102
BsaJI	CCNNGG	3 cut(s)	298, 705, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 234
Bse1I	ACTGG	3 cut(s)	171, 239, 514
Bse3DI	GCAATG	3 cut(s)	330, 777, 1102
BseBI	CCWGG	4 cut(s)	444, 480, 1212, 1239
BseDI	CCNNGG	3 cut(s)	298, 705, 853
BseGI	GGATG	6 cut(s)	583, 714, 758, 817, 930, 1122
BseLI	CCNNNNNNNGG	2 cut(s)	38, 234
BseMI	GCAATG	3 cut(s)	330, 777, 1102
BseMII	CTCAG	4 cut(s)	162, 965, 975, 1022
BseNI	ACTGG	3 cut(s)	171, 239, 514
BseRI	GAGGAG	2 cut(s)	366, 555
BseXI	GCAGC	7 cut(s)	31, 34, 37, 40, 419, 552, 568
BshFI	GGCC	2 cut(s)	362, 858
BshNI	GGYRCC	1 cut(s)	878
BsiHKCI	CYCGRG	2 cut(s)	705, 742
BsiSI	CCGG	3 cut(s)	706, 863, 1101
BslFI	GGGAC	2 cut(s)	177, 1187
BslI	CCNNNNNNNGG	2 cut(s)	38, 234
BsmAI	GTCTC	2 cut(s)	730, 1021
BsmFI	GGGAC	2 cut(s)	177, 1187
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	362, 858
BsoBI	CYCGRG	2 cut(s)	705, 742
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp143I	GATC	1 cut(s)	439
Bsp19I	CCATGG	1 cut(s)	298
BspANI	GGCC	2 cut(s)	362, 858
BspCNI	CTCAG	4 cut(s)	163, 964, 976, 1023
BspLI	GGNNCC	1 cut(s)	880
BspMAI	CTGCAG	2 cut(s)	397, 409
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	878
BspTI	CTTAAG	1 cut(s)	1295
BsrDI	GCAATG	3 cut(s)	330, 777, 1102
BsrI	ACTGG	3 cut(s)	171, 239, 514
BssECI	CCNNGG	3 cut(s)	298, 705, 853
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	2 cut(s)	298, 853
Bst2UI	CCWGG	4 cut(s)	444, 480, 1212, 1239
Bst4CI	ACNGT	3 cut(s)	536, 664, 883
Bst6I	CTCTTC	3 cut(s)	207, 678, 1031
BstAFI	CTTAAG	1 cut(s)	1295
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	4 cut(s)	171, 951, 984, 1031
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	6 cut(s)	583, 714, 758, 817, 930, 1122
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	2 cut(s)	730, 1021
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 28, 407, 578
BstNI	CCWGG	4 cut(s)	444, 480, 1212, 1239
BstSCI	CCNGG	8 cut(s)	442, 478, 704, 705, 862, 1100, 1210, 1237
BstSFI	CTRYAG	2 cut(s)	393, 405
BstV1I	GCAGC	7 cut(s)	31, 34, 37, 40, 419, 552, 568
BstV2I	GAAGAC	2 cut(s)	84, 801
BsuRI	GGCC	2 cut(s)	362, 858
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	6 cut(s)	583, 714, 758, 817, 930, 1122
BtsI	GCAGTG	1 cut(s)	1225
BtsIMutI	CAGTG	3 cut(s)	532, 996, 1225
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	360
Cfr9I	CCCGGG	1 cut(s)	705
Csp6I	GTAC	3 cut(s)	626, 805, 886
CviAII	CATG	8 cut(s)	71, 299, 337, 610, 976, 1048, 1221, 1267
CviQI	GTAC	3 cut(s)	626, 805, 886
DdeI	CTNAG	4 cut(s)	171, 951, 984, 1031
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Eam1104I	CTCTTC	3 cut(s)	207, 678, 1031
EarI	CTCTTC	3 cut(s)	207, 678, 1031
Eco130I	CCWWGG	2 cut(s)	298, 853
Eco147I	AGGCCT	1 cut(s)	858
Eco24I	GRGCYC	1 cut(s)	749
Eco32I	GATATC	1 cut(s)	945
Eco88I	CYCGRG	2 cut(s)	705, 742
EcoRI	GAATTC	1 cut(s)	992
EcoRII	CCWGG	4 cut(s)	442, 478, 1210, 1237
EcoRV	GATATC	1 cut(s)	945
EcoT14I	CCWWGG	2 cut(s)	298, 853
EcoT38I	GRGCYC	1 cut(s)	749
ErhI	CCWWGG	2 cut(s)	298, 853
FaeI	CATG	8 cut(s)	74, 302, 340, 613, 979, 1051, 1224, 1270
FalI	AAGNNNNNCTT	4 cut(s)	675, 707, 1278, 1310
FaqI	GGGAC	2 cut(s)	177, 1187
FatI	CATG	8 cut(s)	70, 298, 336, 609, 975, 1047, 1220, 1266
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 541, 582
FokI	GGATG	6 cut(s)	590, 701, 745, 824, 937, 1129
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 541, 582
FspBI	CTAG	2 cut(s)	854, 930
GluI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 541, 582
HaeIII	GGCC	2 cut(s)	362, 858
HapII	CCGG	3 cut(s)	706, 863, 1101
Hin1II	CATG	8 cut(s)	74, 302, 340, 613, 979, 1051, 1224, 1270
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	8 cut(s)	80, 131, 150, 175, 688, 787, 822, 1175
HpaII	CCGG	3 cut(s)	706, 863, 1101
HphI	GGTGA	4 cut(s)	458, 694, 928, 1169
Hpy166II	GTNNAC	4 cut(s)	626, 826, 886, 1130
Hpy188I	TCNGA	6 cut(s)	223, 317, 730, 954, 985, 1234
Hpy188III	TCNNGA	4 cut(s)	147, 290, 692, 791
Hpy8I	GTNNAC	4 cut(s)	626, 826, 886, 1130
HpyAV	CCTTC	8 cut(s)	42, 351, 651, 763, 869, 915, 982, 1148
HpyCH4III	ACNGT	3 cut(s)	536, 664, 883
HpyCH4V	TGCA	8 cut(s)	95, 395, 407, 584, 659, 782, 815, 1262
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 28, 407, 578
HpyF3I	CTNAG	4 cut(s)	171, 951, 984, 1031
Hsp92II	CATG	8 cut(s)	74, 302, 340, 613, 979, 1051, 1224, 1270
Kzo9I	GATC	1 cut(s)	439
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	7 cut(s)	31, 34, 37, 40, 419, 552, 568
LweI	GCATC	4 cut(s)	257, 439, 568, 802
MaeI	CTAG	2 cut(s)	854, 930
MaeIII	GTNAC	2 cut(s)	700, 907
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	8 cut(s)	89, 224, 695, 806, 939, 1048, 1078, 1209
MhlI	GDGCHC	1 cut(s)	749
MluCI	AATT	9 cut(s)	365, 550, 735, 992, 1003, 1120, 1160, 1309, 1339
MlyI	GAGTC	4 cut(s)	74, 159, 831, 1169
MmeI	TCCRAC	4 cut(s)	177, 255, 488, 669
MroXI	GAANNNNTTC	2 cut(s)	687, 992
MseI	TTAA	5 cut(s)	422, 1124, 1199, 1296, 1342
MslI	CAYNNNNRTG	2 cut(s)	158, 614
MspCI	CTTAAG	1 cut(s)	1295
MspI	CCGG	3 cut(s)	706, 863, 1101
MspR9I	CCNGG	8 cut(s)	444, 480, 706, 707, 864, 1102, 1212, 1239
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	4 cut(s)	444, 480, 1212, 1239
MwoI	GCNNNNNNNGC	4 cut(s)	25, 28, 407, 578
NciI	CCSGG	4 cut(s)	706, 707, 864, 1102
NcoI	CCATGG	1 cut(s)	298
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	8 cut(s)	74, 302, 340, 613, 979, 1051, 1224, 1270
NlaIV	GGNNCC	1 cut(s)	880
NmuCI	GTSAC	2 cut(s)	700, 907
PceI	AGGCCT	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	2 cut(s)	687, 992
PfeI	GAWTC	4 cut(s)	131, 175, 688, 787
PfoI	TCCNGGA	1 cut(s)	478
PkrI	GCNGC	7 cut(s)	21, 24, 27, 30, 409, 542, 583
PleI	GAGTC	4 cut(s)	74, 158, 830, 1169
PpsI	GAGTC	4 cut(s)	74, 158, 830, 1169
Psp6I	CCWGG	4 cut(s)	442, 478, 1210, 1237
PspGI	CCWGG	4 cut(s)	442, 478, 1210, 1237
PspN4I	GGNNCC	1 cut(s)	880
PspPI	GGNCC	1 cut(s)	360
PstI	CTGCAG	2 cut(s)	397, 409
RsaI	GTAC	3 cut(s)	627, 806, 887
RsaNI	GTAC	3 cut(s)	626, 805, 886
RseI	CAYNNNNRTG	2 cut(s)	158, 614
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	5 cut(s)	422, 1124, 1199, 1296, 1342
SatI	GCNGC	7 cut(s)	20, 23, 26, 29, 408, 541, 582
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	4 cut(s)	74, 159, 831, 1169
ScrFI	CCNGG	8 cut(s)	444, 480, 706, 707, 864, 1102, 1212, 1239
SduI	GDGCHC	1 cut(s)	749
SfaNI	GCATC	4 cut(s)	257, 439, 568, 802
SfcI	CTRYAG	2 cut(s)	393, 405
SmaI	CCCGGG	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	158, 614
SmlI	CTYRAG	2 cut(s)	567, 1295
SmoI	CTYRAG	2 cut(s)	567, 1295
Sse9I	AATT	9 cut(s)	365, 550, 735, 992, 1003, 1120, 1160, 1309, 1339
SseBI	AGGCCT	1 cut(s)	858
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	854, 930
StuI	AGGCCT	1 cut(s)	858
StyD4I	CCNGG	8 cut(s)	442, 478, 704, 705, 862, 1100, 1210, 1237
StyI	CCWWGG	2 cut(s)	298, 853
TaaI	ACNGT	3 cut(s)	536, 664, 883
TaqI	TCGA	2 cut(s)	189, 1056
TasI	AATT	9 cut(s)	365, 550, 735, 992, 1003, 1120, 1160, 1309, 1339
TatI	WGTACW	3 cut(s)	625, 804, 885
TfiI	GAWTC	4 cut(s)	131, 175, 688, 787
Tru1I	TTAA	5 cut(s)	422, 1124, 1199, 1296, 1342
Tru9I	TTAA	5 cut(s)	422, 1124, 1199, 1296, 1342
TscAI	CASTG	3 cut(s)	539, 1003, 1232
TseFI	GTSAC	2 cut(s)	700, 907
TseI	GCWGC	7 cut(s)	19, 22, 25, 28, 407, 540, 581
Tsp45I	GTSAC	2 cut(s)	700, 907
TspDTI	ATGAA	9 cut(s)	144, 174, 325, 418, 747, 760, 1133, 1203, 1209
TspMI	CCCGGG	1 cut(s)	705
TspRI	CASTG	3 cut(s)	539, 1003, 1232
Vha464I	CTTAAG	1 cut(s)	1295
XapI	RAATTY	4 cut(s)	365, 735, 992, 1120
XmaI	CCCGGG	1 cut(s)	705
XmaJI	CCTAGG	1 cut(s)	853
XmnI	GAANNNNTTC	2 cut(s)	687, 992
XspI	CTAG	2 cut(s)	854, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.