Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

5793475 .. 5795138

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCTATAGAGATTGAGCAACCCTGTTCTTCTGTTGAGCTATCAAAAATAGCTGTTTCTGACACTCATGGGGAAGACTCTCCCTATTTTGCAGGCTGGAAAGCATACGATGAAAACCCTTACGATGAATCAAGTAACCCTTCTGGAGTTATACAGATGGGACTTGCAGAGAATCAAGTTTCATTTGATTTGGTGGAAGAGTACCTGGAACAACATCCAGAAGCTTCCAACTTGGGATCAAAAGGGTTTAGAGAAAATGCCTTGTTTCAAGACTACCATGGCCTTTTGTCTTTCAGAAAGGCAATGGCAAGTTTCATGGAGCAAATCAGAGGAGGAAGAGCCAAGTTTGACCCTAGTAGGATAGTCCTCACTGCTGGCGCAACCGCAGCGAATGAGCTGTTGACTTTCGTTCTTGCTGATCCGGGTGATGCTTTGCTAGTTCCAACCCCATACTACCCAGGATTCGATAGAGATTTGAGGTGGAGGACTGGAGTGAACATTGTACCAATCCACTGTGACAGCTCCAACAGTTTCCAGATTACTCCTCAAGCTTTAGAAGCTGCATATAATGAAGCAGAAACGATGAACATGAAAGTGAGAGGGGTCCTAATTACGAATCCATCCAACCCATTAGGTGCAACAATCCAAACGGTAGTCCTTCAACAGATTCTTGATTTTGTCACCAAAAAGAACATCCATCTTGTTTCTGATGAAATCTACTCCGGATCCGCCTTCTCATCTTCCGAATTCATAAGTATCGCAGAGATTCTTGAAGCCCAGCAGTATAAGAATTCTGAAAGAGTTCACATTGTTTATAGTCTTTCCAAAGACCTTGGTCTTCCCGGTTTTCGAGTTGGCACAGTATACTCATACAATGACAAAGTTGTAACAACAGCAAGAAGAATGTCTAGCTTCACCTTAATATCTTCTCAAACACAACAACTCTTGGCTTCCATGTTATCCGACAAGGAATTCACAGAAAATTACATCAAAACCAATAGAGAGAGGCTGAGGAAGAGATATGATATGATCATTGAAGGCTTAAAGAACGCCGGAATTAAGTGCTTGGAGGGTAATGCTGGCTTGTTTTGCTGGATGAATTTGGGTCCATTCTTGGACACACCAACAAGGGAAGGTGAACTGGCTATTTGGAATTCTATGATGTATGAGGTGAGGCTAAATATATCTCCGGGTTCTTCTTGCCAGTGCTCTGAACCAGGTTGGTTCAGGGTATGCTTTGCCAACATGAGTGAGCAGACACTTGAAGTGGCACTAAAAAGAATACACAATTTTATGGAACAAAGAGAGAGAAGGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

440

Amino Acids

49.33

Weight (kDa)

5.23

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	51 - 428	3.1e-97	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	864
AccIII	TCCGGA	1 cut(s)	722
AciI	CCGC	2 cut(s)	384, 729
AclWI	GGATC	4 cut(s)	244, 413, 720, 733
AcsI	RAATTY	5 cut(s)	746, 790, 971, 1099, 1153
AfaI	GTAC	2 cut(s)	203, 504
AgsI	TTSAA	5 cut(s)	269, 662, 773, 1037, 1265
AjnI	CCWGG	3 cut(s)	204, 457, 1216
AluBI	AGCT	8 cut(s)	40, 53, 224, 397, 522, 551, 560, 912
AluI	AGCT	8 cut(s)	40, 53, 224, 397, 522, 551, 560, 912
Alw21I	GWGCWC	1 cut(s)	1211
AlwI	GGATC	4 cut(s)	244, 413, 720, 733
Aor13HI	TCCGGA	1 cut(s)	722
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	386, 560
ApoI	RAATTY	5 cut(s)	746, 790, 971, 1099, 1153
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	604, 1106
AsuC2I	CCSGG	3 cut(s)	423, 843, 1191
AsuHPI	GGTGA	5 cut(s)	437, 673, 907, 1148, 1183
AvaII	GGWCC	2 cut(s)	604, 1106
BamHI	GGATCC	1 cut(s)	725
BbsI	GAAGAC	2 cut(s)	81, 830
Bbv12I	GWGCWC	1 cut(s)	1211
BbvCI	CCTCAGC	1 cut(s)	1010
BbvI	GCAGC	2 cut(s)	398, 547
BccI	CCATC	3 cut(s)	151, 628, 705
BciT130I	CCWGG	3 cut(s)	206, 459, 1218
BclI	TGATCA	1 cut(s)	1029
BcnI	CCSGG	3 cut(s)	423, 843, 1191
BfaI	CTAG	4 cut(s)	354, 437, 909, 1318
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	387, 561
BlsI	GCNGC	2 cut(s)	388, 562
Bme1390I	CCNGG	6 cut(s)	206, 423, 459, 843, 1191, 1218
Bme18I	GGWCC	2 cut(s)	604, 1106
BmgT120I	GGNCC	2 cut(s)	604, 1106
BmiI	GGNNCC	3 cut(s)	605, 727, 1107
BmrFI	CCNGG	6 cut(s)	206, 423, 459, 843, 1191, 1218
BmsI	GCATC	1 cut(s)	418
BoxI	GACNNNNGTC	1 cut(s)	834
BpiI	GAAGAC	2 cut(s)	81, 830
BpmI	CTGGAG	2 cut(s)	165, 510
Bpu10I	CCTNAGC	1 cut(s)	1010
BpuEI	CTTGAG	1 cut(s)	531
BpuMI	CCSGG	3 cut(s)	423, 843, 1191
BsaJI	CCNNGG	3 cut(s)	277, 457, 832
BsaWI	WCCGGW	1 cut(s)	722
Bse1I	ACTGG	3 cut(s)	493, 1146, 1204
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	722
BseBI	CCWGG	3 cut(s)	206, 459, 1218
BseDI	CCNNGG	3 cut(s)	277, 457, 832
BseGI	GGATG	4 cut(s)	214, 620, 693, 1101
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	1001
BseNI	ACTGG	3 cut(s)	493, 1146, 1204
BseRI	GAGGAG	2 cut(s)	345, 534
BseXI	GCAGC	2 cut(s)	398, 547
BseYI	CCCAGC	1 cut(s)	777
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	1211
BsiSI	CCGG	5 cut(s)	422, 723, 843, 1053, 1190
BslFI	GGGAC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	1211
Bsp13I	TCCGGA	1 cut(s)	722
Bsp143I	GATC	4 cut(s)	236, 418, 725, 1029
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	384, 729
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	1002
BspEI	TCCGGA	1 cut(s)	722
BspLI	GGNNCC	3 cut(s)	605, 727, 1107
BspPI	GGATC	4 cut(s)	244, 413, 720, 733
BspQI	GCTCTTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	493, 1146, 1204
BssECI	CCNNGG	3 cut(s)	277, 457, 832
BssMI	GATC	4 cut(s)	236, 418, 725, 1029
BssNAI	GTATAC	1 cut(s)	865
BssT1I	CCWWGG	2 cut(s)	277, 832
Bst1107I	GTATAC	1 cut(s)	865
Bst2UI	CCWGG	3 cut(s)	206, 459, 1218
Bst4CI	ACNGT	4 cut(s)	515, 530, 652, 862
Bst6I	CTCTTC	3 cut(s)	192, 331, 1010
BstC8I	GCNNGC	3 cut(s)	94, 376, 1081
BstDEI	CTNAG	1 cut(s)	1010
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	4 cut(s)	214, 620, 693, 1101
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	4 cut(s)	239, 421, 728, 1032
BstMBI	GATC	4 cut(s)	236, 418, 725, 1029
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 557, 1089
BstNI	CCWGG	3 cut(s)	206, 459, 1218
BstPAI	GACNNNNGTC	1 cut(s)	834
BstSCI	CCNGG	6 cut(s)	204, 421, 457, 841, 1189, 1216
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	398, 547
BstV2I	GAAGAC	2 cut(s)	81, 830
BstX2I	RGATCY	1 cut(s)	725
BstYI	RGATCY	1 cut(s)	725
BstZ17I	GTATAC	1 cut(s)	865
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	4 cut(s)	214, 620, 693, 1101
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	369, 511, 1211
Cac8I	GCNNGC	3 cut(s)	94, 376, 1081
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	604, 1106
CsiI	ACCWGGT	1 cut(s)	1216
Csp6I	GTAC	2 cut(s)	202, 503
CviAII	CATG	6 cut(s)	68, 278, 316, 589, 955, 1246
CviQI	GTAC	2 cut(s)	202, 503
DdeI	CTNAG	1 cut(s)	1010
DpnI	GATC	4 cut(s)	238, 420, 727, 1031
DpnII	GATC	4 cut(s)	236, 418, 725, 1029
Eam1104I	CTCTTC	3 cut(s)	192, 331, 1010
EarI	CTCTTC	3 cut(s)	192, 331, 1010
EciI	GGCGGA	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	277, 832
Eco47I	GGWCC	2 cut(s)	604, 1106
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRI	GAATTC	4 cut(s)	746, 790, 971, 1153
EcoRII	CCWGG	3 cut(s)	204, 457, 1216
EcoT14I	CCWWGG	2 cut(s)	277, 832
ErhI	CCWWGG	2 cut(s)	277, 832
FaeI	CATG	6 cut(s)	71, 281, 319, 592, 958, 1249
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	6 cut(s)	67, 277, 315, 588, 954, 1245
FbaI	TGATCA	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	2 cut(s)	387, 561
FokI	GGATG	4 cut(s)	201, 607, 680, 1108
Fsp4HI	GCNGC	2 cut(s)	387, 561
FspBI	CTAG	4 cut(s)	354, 437, 909, 1318
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	2 cut(s)	387, 561
GsaI	CCCAGC	1 cut(s)	781
GsuI	CTGGAG	2 cut(s)	165, 510
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	5 cut(s)	422, 723, 843, 1053, 1190
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	6 cut(s)	71, 281, 319, 592, 958, 1249
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	2 cut(s)	222, 549
HinfI	GANTC	7 cut(s)	77, 128, 172, 462, 616, 667, 766
HpaII	CCGG	5 cut(s)	422, 723, 843, 1053, 1190
HphI	GGTGA	5 cut(s)	437, 673, 907, 1148, 1183
Hpy166II	GTNNAC	5 cut(s)	402, 496, 805, 865, 1139
Hpy188I	TCNGA	8 cut(s)	61, 296, 329, 709, 745, 796, 964, 1213
Hpy188III	TCNNGA	7 cut(s)	144, 218, 269, 535, 671, 723, 770
Hpy8I	GTNNAC	5 cut(s)	402, 496, 805, 865, 1139
HpyAV	CCTTC	6 cut(s)	150, 668, 742, 1031, 1127, 1305
HpyCH4III	ACNGT	4 cut(s)	515, 530, 652, 862
HpyCH4V	TGCA	4 cut(s)	92, 167, 563, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 557, 1089
HpyF3I	CTNAG	1 cut(s)	1010
Hsp92II	CATG	6 cut(s)	71, 281, 319, 592, 958, 1249
HspAI	GCGC	1 cut(s)	378
Kpn2I	TCCGGA	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	1029
Kzo9I	GATC	4 cut(s)	236, 418, 725, 1029
LguI	GCTCTTC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	319, 527
Lsp1109I	GCAGC	2 cut(s)	398, 547
LweI	GCATC	1 cut(s)	418
MabI	ACCWGGT	1 cut(s)	1216
MaeI	CTAG	4 cut(s)	354, 437, 909, 1318
MaeIII	GTNAC	4 cut(s)	134, 515, 679, 886
MalI	GATC	4 cut(s)	238, 420, 727, 1031
MboI	GATC	4 cut(s)	236, 418, 725, 1029
MflI	RGATCY	1 cut(s)	725
MhlI	GDGCHC	1 cut(s)	1211
MluCI	AATT	9 cut(s)	609, 746, 790, 971, 982, 1056, 1099, 1153, 1288
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	5 cut(s)	252, 467, 549, 648, 987
MroI	TCCGGA	1 cut(s)	722
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	3 cut(s)	920, 1043, 1059
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	5 cut(s)	422, 723, 843, 1053, 1190
MspR9I	CCNGG	6 cut(s)	206, 423, 459, 843, 1191, 1218
MvaI	CCWGG	3 cut(s)	206, 459, 1218
MwoI	GCNNNNNNNGC	3 cut(s)	386, 557, 1089
NciI	CCSGG	3 cut(s)	423, 843, 1191
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	4 cut(s)	236, 418, 725, 1029
NlaIII	CATG	6 cut(s)	71, 281, 319, 592, 958, 1249
NlaIV	GGNNCC	3 cut(s)	605, 727, 1107
NmuCI	GTSAC	2 cut(s)	515, 679
PciSI	GCTCTTC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	6 cut(s)	128, 172, 462, 616, 667, 766
PkrI	GCNGC	2 cut(s)	388, 562
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PpuMI	RGGWCCY	1 cut(s)	604
PshAI	GACNNNNGTC	1 cut(s)	834
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	3 cut(s)	204, 457, 1216
PspFI	CCCAGC	1 cut(s)	777
PspGI	CCWGG	3 cut(s)	204, 457, 1216
PspN4I	GGNNCC	3 cut(s)	605, 727, 1107
PspPI	GGNCC	2 cut(s)	604, 1106
PspPPI	RGGWCCY	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	725
RsaI	GTAC	2 cut(s)	203, 504
RsaNI	GTAC	2 cut(s)	202, 503
RseI	CAYNNNNRTG	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	920, 1043, 1059
SatI	GCNGC	2 cut(s)	387, 561
Sau3AI	GATC	4 cut(s)	236, 418, 725, 1029
Sau96I	GGNCC	2 cut(s)	604, 1106
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	6 cut(s)	206, 423, 459, 843, 1191, 1218
SduI	GDGCHC	1 cut(s)	1211
SexAI	ACCWGGT	1 cut(s)	1216
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	604, 1106
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	9 cut(s)	609, 746, 790, 971, 982, 1056, 1099, 1153, 1288
SsiI	CCGC	2 cut(s)	384, 729
SspMI	CTAG	4 cut(s)	354, 437, 909, 1318
StyD4I	CCNGG	6 cut(s)	204, 421, 457, 841, 1189, 1216
StyI	CCWWGG	2 cut(s)	277, 832
TaaI	ACNGT	4 cut(s)	515, 530, 652, 862
TaqI	TCGA	2 cut(s)	465, 850
TasI	AATT	9 cut(s)	609, 746, 790, 971, 982, 1056, 1099, 1153, 1288
TfiI	GAWTC	6 cut(s)	128, 172, 462, 616, 667, 766
Tru1I	TTAA	3 cut(s)	920, 1043, 1059
Tru9I	TTAA	3 cut(s)	920, 1043, 1059
TscAI	CASTG	3 cut(s)	376, 518, 1211
TseFI	GTSAC	2 cut(s)	515, 679
TseI	GCWGC	2 cut(s)	386, 560
Tsp45I	GTSAC	2 cut(s)	515, 679
TspRI	CASTG	3 cut(s)	376, 518, 1211
VpaK11BI	GGWCC	2 cut(s)	604, 1106
XapI	RAATTY	5 cut(s)	746, 790, 971, 1099, 1153
XmiI	GTMKAC	1 cut(s)	864
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	4 cut(s)	354, 437, 909, 1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.