FvH4_1g06950

1-aminocyclopropane-1-carboxylate synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
3670113 .. 3680017
9905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06950.t5

Sequence Viewer

Length: 1341 bp
ATGGCTATAGAGATTGAGCAAAGTCCTCCTTCTGTTGGACTATCAAAAATAGCTGTTTCTGCTACTCACGGAGAAGACTCACCATACTTTGCCGGCTGGAAAGCATACGATGAAAACCCTTACGATGAATGGAGTAATCCCTCGGGTGTTATACAGATGGGACTGGCAGAGAATCAAGTTTCATTTGATTTGGTGGAAGAGTACCTGGAACAACATCCAGAAGCTTCCAACCTGGGATCAAAAGGATTTAGAGAAAATGCCTTGTTTCAAGACTACCATGGCCTTTTGTCTTTCAGAAAGGCAATGGCAAGTTTCATGGAGCAAATCAGAGGGGGAAGAGCCAAATTTGATCCTGAGAGGATAGTCCTAACTGCAGGAGCAACTGCAGCAAATGAACTTTTAACTTTCATTCTGGCTGATCCTGGTGATGCTTTGCTAGTCCCAACCCCATACTATCCAGGATTTGATAGAGACCTGAGGTGGAGGACCGGTGTGAATATTGTACCCATCCACTGCGACAGCTCAAACAATTTCCAAATTACTCCTCAAGCTTTAGGAGCGGCTTATAGTGAAGCAGAAAATAAGAAAATGAAAGTGAGGGGGGTCCTAATTACGAATCCATCCAATCCATTAGGCGCAACAATTCAGAGGGTAGTCCTTCAACAGATTCTTGATTTTGTCACCAAAAAGAACATCCATCTTGTTTCTGATGAAATCTACTCTGGATCCGCGTTCTCATCTTCAGAATTCGTAAGCGTCGCAGAGATTCTTGAAGCCCAGCAGTACAAGAATGCTGAAAGAGTTCACATTGTTTACAGCCTTTCAAAGGACCTTGGACTTCCCGGTTTTCGAGTTGGCACAGTATACTCATACAACGACAAAGTTGTAACAACGGCGAGAAGGATGTCTAGCTTCACTTTAATATCTTCACAAACACAGCATCTCTTGGCTTCCATGCTATCTGACAAGGAATTCACTGAAAATTACATTGAGACCAACAGAGAGAGGCTGAGGAAGAGATATGATATGATCATTGAAGGTTTGACGAGCAGTGGAATTGAGTGTTTGAAGGGTAATGCTGGGTTGTTTTGCTGGATGAATTTGGGTCCATTCTTGGACACACCAACAAGAGAAGGTGAATTGGCTCTTTGGAATTCTATTGTGCATGAAGTGAAGCTGAATATATCTCCCGGCTCTTCTTGCCATTGCTCTGAACCAGGATGGTTCCGGGTGTGTTTTGCTAACATGAGCGAGCAAACACTTGAAGTAGCAATGAAAAGGATACGTGATTTCATGGGGAAAAAAAAAGAGAGAAGTAGACATTCGTTTTCCTCTCTTTAA

Protein Analysis

447

Amino Acids

49.88

Weight (kDa)

5.77

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 1 - 376 1.7e-97 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 560
AccI GTMKAC 2 cut(s) 864, 1318
AccII CGCG 1 cut(s) 731
AciI CCGC 2 cut(s) 560, 729
AclWI GGATC 5 cut(s) 244, 344, 413, 720, 733
AcsI RAATTY 5 cut(s) 344, 746, 971, 1099, 1153
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 3 cut(s) 203, 504, 785
AfiI CCNNNNNNNGG 2 cut(s) 35, 826
AgeI ACCGGT 1 cut(s) 488
AgsI TTSAA 7 cut(s) 269, 662, 773, 825, 1037, 1069, 1265
AjnI CCWGG 5 cut(s) 204, 231, 421, 457, 1216
AluBI AGCT 6 cut(s) 53, 224, 522, 551, 912, 1177
AluI AGCT 6 cut(s) 53, 224, 522, 551, 912, 1177
Alw26I GTCTC 2 cut(s) 465, 986
AlwI GGATC 5 cut(s) 244, 344, 413, 720, 733
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 5 cut(s) 344, 746, 971, 1099, 1153
AsiGI ACCGGT 1 cut(s) 488
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 4 cut(s) 486, 604, 829, 1106
AsuC2I CCSGG 3 cut(s) 843, 1191, 1229
AsuHPI GGTGA 4 cut(s) 72, 437, 673, 1148
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 4 cut(s) 486, 604, 829, 1106
AxyI CCTNAGG 1 cut(s) 476
BamHI GGATCC 1 cut(s) 725
BbsI GAAGAC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 1010
BbvI GCAGC 1 cut(s) 398
BccI CCATC 5 cut(s) 151, 515, 628, 705, 1215
BceAI ACGGC 1 cut(s) 909
BciT130I CCWGG 5 cut(s) 206, 233, 423, 459, 1218
BciVI GTATCC 1 cut(s) 1275
BclI TGATCA 1 cut(s) 1029
BcnI CCSGG 3 cut(s) 843, 1191, 1229
BcoDI GTCTC 2 cut(s) 465, 986
BfaI CTAG 2 cut(s) 437, 909
BfmI CTRYAG 3 cut(s) 6, 372, 384
BfuI GTATCC 1 cut(s) 1275
BisI GCNGC 2 cut(s) 387, 561
BlsI GCNGC 2 cut(s) 388, 562
Bme1390I CCNGG 8 cut(s) 206, 233, 423, 459, 843, 1191, 1218, 1229
Bme18I GGWCC 4 cut(s) 486, 604, 829, 1106
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 4 cut(s) 486, 604, 829, 1106
BmiI GGNNCC 4 cut(s) 605, 727, 1107, 1226
BmrFI CCNGG 8 cut(s) 206, 233, 423, 459, 843, 1191, 1218, 1229
BmsI GCATC 2 cut(s) 418, 949
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 1010
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 3 cut(s) 843, 1191, 1229
BsaAI YACGTR 1 cut(s) 1286
BsaI GGTCTC 2 cut(s) 465, 986
BsaJI CCNNGG 4 cut(s) 141, 232, 277, 832
BsaWI WCCGGW 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 826
Bse118I RCCGGY 2 cut(s) 92, 488
Bse1I ACTGG 1 cut(s) 168
Bse21I CCTNAGG 1 cut(s) 476
Bse3DI GCAATG 3 cut(s) 309, 1204, 1278
BseBI CCWGG 5 cut(s) 206, 233, 423, 459, 1218
BseDI CCNNGG 4 cut(s) 141, 232, 277, 832
BseGI GGATG 7 cut(s) 214, 507, 620, 693, 909, 1101, 1226
BseLI CCNNNNNNNGG 2 cut(s) 35, 826
BseMI GCAATG 3 cut(s) 309, 1204, 1278
BseMII CTCAG 3 cut(s) 345, 467, 1001
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 398
BseYI CCCAGC 2 cut(s) 777, 1079
Bsh1236I CGCG 1 cut(s) 731
BshFI GGCC 1 cut(s) 282
BshTI ACCGGT 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 5 cut(s) 93, 489, 843, 1191, 1228
BslFI GGGAC 2 cut(s) 174, 425
BslI CCNNNNNNNGG 2 cut(s) 35, 826
BsmAI GTCTC 2 cut(s) 465, 986
BsmFI GGGAC 2 cut(s) 174, 425
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 2 cut(s) 465, 986
BsoBI CYCGRG 1 cut(s) 142
Bsp143I GATC 5 cut(s) 236, 349, 418, 725, 1029
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 2 cut(s) 560, 729
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 3 cut(s) 346, 468, 1002
BspFNI CGCG 1 cut(s) 731
BspLI GGNNCC 4 cut(s) 605, 727, 1107, 1226
BspMAI CTGCAG 2 cut(s) 376, 388
BspPI GGATC 5 cut(s) 244, 344, 413, 720, 733
BspQI GCTCTTC 2 cut(s) 331, 1201
BspTNI GGTCTC 2 cut(s) 465, 986
BsrBI CCGCTC 1 cut(s) 560
BsrDI GCAATG 3 cut(s) 309, 1204, 1278
BsrFI RCCGGY 2 cut(s) 92, 488
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 2 cut(s) 92, 488
BssECI CCNNGG 4 cut(s) 141, 232, 277, 832
BssMI GATC 5 cut(s) 236, 349, 418, 725, 1029
BssNAI GTATAC 1 cut(s) 865
BssT1I CCWWGG 2 cut(s) 277, 832
Bst1107I GTATAC 1 cut(s) 865
Bst2UI CCWGG 5 cut(s) 206, 233, 423, 459, 1218
Bst4CI ACNGT 1 cut(s) 862
Bst6I CTCTTC 4 cut(s) 192, 331, 1010, 1201
BstBAI YACGTR 1 cut(s) 1286
BstC8I GCNNGC 2 cut(s) 94, 1253
BstDEI CTNAG 3 cut(s) 354, 476, 1010
BstDSI CCRYGG 1 cut(s) 277
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 7 cut(s) 214, 507, 620, 693, 909, 1101, 1226
BstFNI CGCG 1 cut(s) 731
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 5 cut(s) 239, 352, 421, 728, 1032
BstMAI GTCTC 2 cut(s) 465, 986
BstMBI GATC 5 cut(s) 236, 349, 418, 725, 1029
BstMWI GCNNNNNNNGC 4 cut(s) 59, 386, 557, 1200
BstNI CCWGG 5 cut(s) 206, 233, 423, 459, 1218
BstSCI CCNGG 8 cut(s) 204, 231, 421, 457, 841, 1189, 1216, 1227
BstSFI CTRYAG 3 cut(s) 6, 372, 384
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
BstZ17I GTATAC 1 cut(s) 865
Bsu36I CCTNAGG 1 cut(s) 476
BsuI GTATCC 1 cut(s) 1275
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 7 cut(s) 214, 507, 620, 693, 909, 1101, 1226
BtsI GCAGTG 2 cut(s) 511, 1057
BtsIMutI CAGTG 3 cut(s) 511, 975, 1057
Cac8I GCNNGC 2 cut(s) 94, 1253
CfoI GCGC 1 cut(s) 638
Cfr10I RCCGGY 2 cut(s) 92, 488
Cfr13I GGNCC 4 cut(s) 486, 604, 829, 1106
CseI GACGC 1 cut(s) 745
Csp6I GTAC 3 cut(s) 202, 503, 784
CspAI ACCGGT 1 cut(s) 488
CviAII CATG 6 cut(s) 278, 316, 955, 1166, 1246, 1294
CviQI GTAC 3 cut(s) 202, 503, 784
DdeI CTNAG 3 cut(s) 354, 476, 1010
DpnI GATC 5 cut(s) 238, 351, 420, 727, 1031
DpnII GATC 5 cut(s) 236, 349, 418, 725, 1029
Eam1104I CTCTTC 4 cut(s) 192, 331, 1010, 1201
EarI CTCTTC 4 cut(s) 192, 331, 1010, 1201
Eco130I CCWWGG 2 cut(s) 277, 832
Eco31I GGTCTC 2 cut(s) 465, 986
Eco47I GGWCC 4 cut(s) 486, 604, 829, 1106
Eco57I CTGAAG 1 cut(s) 726
Eco81I CCTNAGG 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoO109I RGGNCCY 2 cut(s) 604, 829
EcoRI GAATTC 3 cut(s) 746, 971, 1153
EcoRII CCWGG 5 cut(s) 204, 231, 421, 457, 1216
EcoT14I CCWWGG 2 cut(s) 277, 832
ErhI CCWWGG 2 cut(s) 277, 832
FaeI CATG 6 cut(s) 281, 319, 958, 1169, 1249, 1297
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 2 cut(s) 174, 425
FatI CATG 6 cut(s) 277, 315, 954, 1165, 1245, 1293
FbaI TGATCA 1 cut(s) 1029
FblI GTMKAC 2 cut(s) 864, 1318
Fnu4HI GCNGC 2 cut(s) 387, 561
FokI GGATG 7 cut(s) 201, 494, 607, 680, 916, 1108, 1233
Fsp4HI GCNGC 2 cut(s) 387, 561
FspBI CTAG 2 cut(s) 437, 909
GlaI GCGC 1 cut(s) 637
GluI GCNGC 2 cut(s) 387, 561
GsaI CCCAGC 2 cut(s) 781, 1083
HaeIII GGCC 1 cut(s) 282
HapII CCGG 5 cut(s) 93, 489, 843, 1191, 1228
HgaI GACGC 1 cut(s) 745
HhaI GCGC 1 cut(s) 638
Hin1II CATG 6 cut(s) 281, 319, 958, 1169, 1249, 1297
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HindIII AAGCTT 2 cut(s) 222, 549
HinfI GANTC 5 cut(s) 77, 172, 616, 667, 766
HpaII CCGG 5 cut(s) 93, 489, 843, 1191, 1228
HphI GGTGA 4 cut(s) 72, 437, 673, 1148
Hpy166II GTNNAC 4 cut(s) 805, 814, 865, 1319
Hpy188I TCNGA 7 cut(s) 296, 329, 648, 709, 745, 964, 1213
Hpy188III TCNNGA 6 cut(s) 218, 269, 353, 671, 723, 770
Hpy8I GTNNAC 4 cut(s) 805, 814, 865, 1319
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 6 cut(s) 39, 668, 894, 1031, 1063, 1127
HpyCH4III ACNGT 1 cut(s) 862
HpyCH4IV ACGT 1 cut(s) 1285
HpyCH4V TGCA 3 cut(s) 374, 386, 1165
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 386, 557, 1200
HpyF3I CTNAG 3 cut(s) 354, 476, 1010
HpySE526I ACGT 1 cut(s) 1285
Hsp92II CATG 6 cut(s) 281, 319, 958, 1169, 1249, 1297
HspAI GCGC 1 cut(s) 636
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 1029
Kzo9I GATC 5 cut(s) 236, 349, 418, 725, 1029
LguI GCTCTTC 2 cut(s) 331, 1201
LmnI GCTCC 3 cut(s) 319, 377, 557
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 2 cut(s) 418, 949
MaeI CTAG 2 cut(s) 437, 909
MaeII ACGT 1 cut(s) 1285
MaeIII GTNAC 2 cut(s) 679, 886
MalI GATC 5 cut(s) 238, 351, 420, 727, 1031
MbiI CCGCTC 1 cut(s) 560
MboI GATC 5 cut(s) 236, 349, 418, 725, 1029
MboII GAAGA 7 cut(s) 86, 209, 348, 732, 918, 1027, 1188
MflI RGATCY 1 cut(s) 725
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 16, 252
MroNI GCCGGC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 3 cut(s) 401, 920, 1339
MspI CCGG 5 cut(s) 93, 489, 843, 1191, 1228
MspR9I CCNGG 8 cut(s) 206, 233, 423, 459, 843, 1191, 1218, 1229
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 5 cut(s) 206, 233, 423, 459, 1218
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 4 cut(s) 59, 386, 557, 1200
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 3 cut(s) 843, 1191, 1229
NcoI CCATGG 1 cut(s) 277
NdeII GATC 5 cut(s) 236, 349, 418, 725, 1029
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 6 cut(s) 281, 319, 958, 1169, 1249, 1297
NlaIV GGNNCC 4 cut(s) 605, 727, 1107, 1226
NmuCI GTSAC 1 cut(s) 679
PciSI GCTCTTC 2 cut(s) 331, 1201
PctI GAATGC 1 cut(s) 796
PdiI GCCGGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 4 cut(s) 172, 616, 667, 766
PfoI TCCNGGA 1 cut(s) 457
PinAI ACCGGT 1 cut(s) 488
PkrI GCNGC 2 cut(s) 388, 562
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 1286
PpuMI RGGWCCY 2 cut(s) 604, 829
Psp5II RGGWCCY 2 cut(s) 604, 829
Psp6I CCWGG 5 cut(s) 204, 231, 421, 457, 1216
PspFI CCCAGC 2 cut(s) 777, 1079
PspGI CCWGG 5 cut(s) 204, 231, 421, 457, 1216
PspN4I GGNNCC 4 cut(s) 605, 727, 1107, 1226
PspPI GGNCC 4 cut(s) 486, 604, 829, 1106
PspPPI RGGWCCY 2 cut(s) 604, 829
PstI CTGCAG 2 cut(s) 376, 388
PsuI RGATCY 1 cut(s) 725
RsaI GTAC 3 cut(s) 203, 504, 785
RsaNI GTAC 3 cut(s) 202, 503, 784
SapI GCTCTTC 2 cut(s) 331, 1201
SaqAI TTAA 3 cut(s) 401, 920, 1339
SatI GCNGC 2 cut(s) 387, 561
Sau3AI GATC 5 cut(s) 236, 349, 418, 725, 1029
Sau96I GGNCC 4 cut(s) 486, 604, 829, 1106
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 8 cut(s) 206, 233, 423, 459, 843, 1191, 1218, 1229
SfaNI GCATC 2 cut(s) 418, 949
SfcI CTRYAG 3 cut(s) 6, 372, 384
SinI GGWCC 4 cut(s) 486, 604, 829, 1106
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
SsiI CCGC 2 cut(s) 560, 729
SspI AATATT 1 cut(s) 499
SspMI CTAG 2 cut(s) 437, 909
StyD4I CCNGG 8 cut(s) 204, 231, 421, 457, 841, 1189, 1216, 1227
StyI CCWWGG 2 cut(s) 277, 832
TaaI ACNGT 1 cut(s) 862
TaiI ACGT 1 cut(s) 1288
TaqI TCGA 1 cut(s) 850
TatI WGTACW 1 cut(s) 783
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 4 cut(s) 172, 616, 667, 766
Tru1I TTAA 3 cut(s) 401, 920, 1339
Tru9I TTAA 3 cut(s) 401, 920, 1339
TscAI CASTG 3 cut(s) 518, 982, 1057
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 679
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 518, 982, 1057
VpaK11BI GGWCC 4 cut(s) 486, 604, 829, 1106
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 5 cut(s) 344, 746, 971, 1099, 1153
XmiI GTMKAC 2 cut(s) 864, 1318
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 2 cut(s) 437, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.