Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

5781592 .. 5783372

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCTGGAGAGATTGCGCAAAGTCCTTCTTCTGTTGGGCTATCAAAAATAGCTGTTTCAGCTACTCATGGAGAAGACTCACCATACTTTGCAGGCTGGAAAGCATACGATGAAAACCCTTATGATGAATCGAGTAACCCTTCGGGAGTTATACAGATGGGACTGGCAGAGAATCAAGTTTCATTTGATTTGGTGGAAGAGTACTTGGAAAAGCATTCAGAAGCTTCCAACTGGGGATCATCAACACGCTTTAGGGAAAATGCCTTGTTTCAAGACTACCATGGCCTTTTGTCCTTTAGAAAGGCAATGGCAAGTTTCATGGAGCAAATCAGAGGAGGAAGAGCCAAATTTGACCCTGAGAGGATGGTCCTAACCGCAGGAGCTACTGCAGCCAATGAGCTTTTAACTTTCATTCTAGCTGATCCTGGAGACGCTTTGCTTGTCCCAACCCCATATTATCCAGGATTTGACAGAGACTTGAAGTGGAGGACCGGTGTGAATATTATACCAATCCATTGCGACAGCTCAAACAATTTCCAGATTACTCCTCAAGCTTTAGAAGCAGCATATAGTGAAGCAGAAGCCAAGAACATGAAAGTGAGAGGGGTTTTAATTACAAATCCATCCAACCCATTAGGTGCAACAATCCAAAGGGTAGTCCTTCAGCAGATTCTTGATTTTGTCACCAAAAAGAACATCCATCTTGTGTCTGATGAAATCTACTCGGGATCAGCCTTCTCATCTTCGAAATTCATAAGCATTGCTGAAATTCTTCAAGGCAGAAGGTACAAAGATTCAGAAAGAGTTCACATTGTTTATAGTCTTTCCAAAGATCTTGGCCTCCCTGGTTTTAGAGTTGGCACCATATACTCATACAATGACAAGGTTGTAACAACAGCAAGAAGGATGTCTAGCTTCACTTTAATATCTTCTCAAACACAGCATCTCTTGGCTTCCATGCTATCCAACAAGGAATTCACTGAAAAATATATAAAGACAAATAGAGAGAGGCTGAGGAAGAGATATGATATGATCATTGAAGGCCTGAAGAGCACCGGAATTGAGTGTCTGAAGGGTAATGCCGGGTTGTTTTGCTGGATGAATTTGAGTCCATTCATGGACACACCAACAAGAGAAGGTGAATTGGCTCTTTGGAATTCTATGGTGCATGAAGTGAAGCTGAATATATCTCCCGGTTCTTCTTGCCATTGCTCTGAACCAGGATGGTTCCGGGTATGTTTTGCTAACATGAGCGAGCAAACTCTTGAAGTAGCAATGAAAAGAATACATGATTTCATGGAACAAAGAGAGAGAAGTAGGAATCCAGTTTCCTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

447

Amino Acids

50.01

Weight (kDa)

6.4

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	51 - 429	2.2e-98	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	860
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	3 cut(s)	244, 416, 736
AcsI	RAATTY	6 cut(s)	347, 749, 768, 974, 1102, 1156
AcuI	CTGAAG	3 cut(s)	647, 1067, 1091
AfaI	GTAC	2 cut(s)	203, 788
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	5 cut(s)	272, 481, 776, 1040, 1268
AjnI	CCWGG	4 cut(s)	424, 460, 844, 1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
Alw21I	GWGCWC	1 cut(s)	1055
Alw26I	GTCTC	2 cut(s)	423, 468
AlwI	GGATC	3 cut(s)	244, 416, 736
Ama87I	CYCGRG	1 cut(s)	724
AoxI	GGCC	3 cut(s)	283, 838, 1042
ApeKI	GCWGC	2 cut(s)	389, 563
ApoI	RAATTY	6 cut(s)	347, 749, 768, 974, 1102, 1156
AsiGI	ACCGGT	1 cut(s)	491
Asp700I	GAANNNNTTC	2 cut(s)	771, 804
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	367, 489
AsuC2I	CCSGG	3 cut(s)	1084, 1194, 1232
AsuHPI	GGTGA	3 cut(s)	72, 676, 1151
AsuII	TTCGAA	1 cut(s)	746
AvaI	CYCGRG	1 cut(s)	724
AvaII	GGWCC	2 cut(s)	367, 489
BanI	GGYRCC	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	1055
BbvCI	CCTCAGC	1 cut(s)	1013
BbvI	GCAGC	2 cut(s)	401, 575
BccI	CCATC	5 cut(s)	151, 358, 631, 708, 1218
BciT130I	CCWGG	4 cut(s)	426, 462, 846, 1221
BclI	TGATCA	1 cut(s)	1032
BcnI	CCSGG	3 cut(s)	1084, 1194, 1232
BcoDI	GTCTC	2 cut(s)	423, 468
BfaI	CTAG	2 cut(s)	416, 912
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	2 cut(s)	390, 564
BlsI	GCNGC	2 cut(s)	391, 565
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	7 cut(s)	426, 462, 846, 1084, 1194, 1221, 1232
Bme18I	GGWCC	2 cut(s)	367, 489
BmeT110I	CYCGRG	1 cut(s)	724
BmgT120I	GGNCC	2 cut(s)	367, 489
BmiI	GGNNCC	2 cut(s)	862, 1229
BmrFI	CCNGG	7 cut(s)	426, 462, 846, 1084, 1194, 1221, 1232
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	952
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	27, 447
Bpu10I	CCTNAGC	1 cut(s)	1013
Bpu14I	TTCGAA	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	534
BpuMI	CCSGG	3 cut(s)	1084, 1194, 1232
BsaJI	CCNNGG	2 cut(s)	280, 844
BsaWI	WCCGGW	2 cut(s)	491, 1055
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	168, 236, 1325
Bse3DI	GCAATG	5 cut(s)	312, 514, 759, 1207, 1281
BseBI	CCWGG	4 cut(s)	426, 462, 846, 1221
BseDI	CCNNGG	2 cut(s)	280, 844
BseGI	GGATG	6 cut(s)	369, 623, 696, 912, 1104, 1229
BseMI	GCAATG	5 cut(s)	312, 514, 759, 1207, 1281
BseMII	CTCAG	2 cut(s)	348, 1004
BseNI	ACTGG	3 cut(s)	168, 236, 1325
BseRI	GAGGAG	2 cut(s)	348, 537
BseXI	GCAGC	2 cut(s)	401, 575
BshFI	GGCC	3 cut(s)	285, 840, 1044
BshNI	GGYRCC	1 cut(s)	860
BshTI	ACCGGT	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	1055
BsiHKCI	CYCGRG	1 cut(s)	724
BsiSI	CCGG	5 cut(s)	492, 1056, 1083, 1194, 1231
BslFI	GGGAC	2 cut(s)	174, 428
BsmAI	GTCTC	2 cut(s)	423, 468
BsmBI	CGTCTC	1 cut(s)	423
BsmFI	GGGAC	2 cut(s)	174, 428
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	285, 840, 1044
BsoBI	CYCGRG	1 cut(s)	724
Bsp119I	TTCGAA	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	5 cut(s)	236, 421, 728, 832, 1032
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	3 cut(s)	285, 840, 1044
BspCNI	CTCAG	2 cut(s)	349, 1005
BspLI	GGNNCC	2 cut(s)	862, 1229
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	244, 416, 736
BspQI	GCTCTTC	2 cut(s)	334, 1043
BspT104I	TTCGAA	1 cut(s)	746
BspT107I	GGYRCC	1 cut(s)	860
BsrDI	GCAATG	5 cut(s)	312, 514, 759, 1207, 1281
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	3 cut(s)	168, 236, 1325
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	280, 844
BssMI	GATC	5 cut(s)	236, 421, 728, 832, 1032
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	4 cut(s)	426, 462, 846, 1221
Bst6I	CTCTTC	4 cut(s)	192, 334, 1013, 1043
BstBI	TTCGAA	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	94, 1256
BstDEI	CTNAG	2 cut(s)	357, 1013
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	6 cut(s)	369, 623, 696, 912, 1104, 1229
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	5 cut(s)	239, 424, 731, 835, 1035
BstMAI	GTCTC	2 cut(s)	423, 468
BstMBI	GATC	5 cut(s)	236, 421, 728, 832, 1032
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 389, 560, 1050
BstNI	CCWGG	4 cut(s)	426, 462, 846, 1221
BstSCI	CCNGG	7 cut(s)	424, 460, 844, 1082, 1192, 1219, 1230
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	401, 575
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	285, 840, 1044
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	6 cut(s)	369, 623, 696, 912, 1104, 1229
BtsIMutI	CAGTG	1 cut(s)	978
Cac8I	GCNNGC	2 cut(s)	94, 1256
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	367, 489
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	202, 787
CspAI	ACCGGT	1 cut(s)	491
CviQI	GTAC	2 cut(s)	202, 787
DdeI	CTNAG	2 cut(s)	357, 1013
DpnI	GATC	5 cut(s)	238, 423, 730, 834, 1034
DpnII	GATC	5 cut(s)	236, 421, 728, 832, 1032
Eam1104I	CTCTTC	4 cut(s)	192, 334, 1013, 1043
EarI	CTCTTC	4 cut(s)	192, 334, 1013, 1043
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	1044
Eco47I	GGWCC	2 cut(s)	367, 489
Eco57I	CTGAAG	3 cut(s)	647, 1067, 1091
Eco88I	CYCGRG	1 cut(s)	724
EcoRI	GAATTC	2 cut(s)	974, 1156
EcoRII	CCWGG	4 cut(s)	424, 460, 844, 1219
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	423
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	2 cut(s)	174, 428
FbaI	TGATCA	1 cut(s)	1032
Fnu4HI	GCNGC	2 cut(s)	390, 564
FokI	GGATG	6 cut(s)	376, 610, 683, 919, 1111, 1236
Fsp4HI	GCNGC	2 cut(s)	390, 564
FspBI	CTAG	2 cut(s)	416, 912
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	390, 564
GsuI	CTGGAG	2 cut(s)	27, 447
HaeIII	GGCC	3 cut(s)	285, 840, 1044
HapII	CCGG	5 cut(s)	492, 1056, 1083, 1194, 1231
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	2 cut(s)	222, 552
HinfI	GANTC	7 cut(s)	77, 128, 172, 670, 794, 1108, 1321
HpaII	CCGG	5 cut(s)	492, 1056, 1083, 1194, 1231
HphI	GGTGA	3 cut(s)	72, 676, 1151
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	6 cut(s)	220, 332, 712, 799, 1071, 1216
Hpy188III	TCNNGA	6 cut(s)	144, 272, 538, 674, 726, 1265
Hpy8I	GTNNAC	1 cut(s)	808
HpyAV	CCTTC	9 cut(s)	36, 150, 671, 745, 777, 897, 1034, 1066, 1130
HpyCH4V	TGCA	4 cut(s)	92, 389, 641, 1168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 389, 560, 1050
HpyF3I	CTNAG	2 cut(s)	357, 1013
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	1032
Kzo9I	GATC	5 cut(s)	236, 421, 728, 832, 1032
LguI	GCTCTTC	2 cut(s)	334, 1043
LmnI	GCTCC	2 cut(s)	322, 380
Lsp1109I	GCAGC	2 cut(s)	401, 575
LweI	GCATC	1 cut(s)	952
MaeI	CTAG	2 cut(s)	416, 912
MaeIII	GTNAC	3 cut(s)	134, 682, 889
MalI	GATC	5 cut(s)	238, 423, 730, 834, 1034
MboI	GATC	5 cut(s)	236, 421, 728, 832, 1032
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	1 cut(s)	1055
MlyI	GAGTC	2 cut(s)	71, 1117
MmeI	TCCRAC	3 cut(s)	252, 651, 990
MnlI	CCTC	9 cut(s)	326, 329, 354, 480, 558, 596, 851, 1002, 1008
MroXI	GAANNNNTTC	2 cut(s)	771, 804
MseI	TTAA	4 cut(s)	404, 611, 923, 1339
MslI	CAYNNNNRTG	1 cut(s)	596
MspI	CCGG	5 cut(s)	492, 1056, 1083, 1194, 1231
MspR9I	CCNGG	7 cut(s)	426, 462, 846, 1084, 1194, 1221, 1232
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	4 cut(s)	426, 462, 846, 1221
MwoI	GCNNNNNNNGC	4 cut(s)	59, 389, 560, 1050
NciI	CCSGG	3 cut(s)	1084, 1194, 1232
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	5 cut(s)	236, 421, 728, 832, 1032
NlaIV	GGNNCC	2 cut(s)	862, 1229
NmuCI	GTSAC	1 cut(s)	682
NsbI	TGCGCA	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	746
PceI	AGGCCT	1 cut(s)	1044
PciSI	GCTCTTC	2 cut(s)	334, 1043
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	771, 804
PfeI	GAWTC	5 cut(s)	128, 172, 670, 794, 1321
PfoI	TCCNGGA	2 cut(s)	424, 460
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	391, 565
PleI	GAGTC	2 cut(s)	71, 1116
PpsI	GAGTC	2 cut(s)	71, 1116
Psp6I	CCWGG	4 cut(s)	424, 460, 844, 1219
PspGI	CCWGG	4 cut(s)	424, 460, 844, 1219
PspN4I	GGNNCC	2 cut(s)	862, 1229
PspPI	GGNCC	2 cut(s)	367, 489
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	2 cut(s)	203, 788
RsaNI	GTAC	2 cut(s)	202, 787
RseI	CAYNNNNRTG	1 cut(s)	596
SapI	GCTCTTC	2 cut(s)	334, 1043
SaqAI	TTAA	4 cut(s)	404, 611, 923, 1339
SatI	GCNGC	2 cut(s)	390, 564
Sau3AI	GATC	5 cut(s)	236, 421, 728, 832, 1032
Sau96I	GGNCC	2 cut(s)	367, 489
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	2 cut(s)	71, 1117
ScrFI	CCNGG	7 cut(s)	426, 462, 846, 1084, 1194, 1221, 1232
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	1 cut(s)	952
SfcI	CTRYAG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	746
SinI	GGWCC	2 cut(s)	367, 489
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SseBI	AGGCCT	1 cut(s)	1044
SsiI	CCGC	1 cut(s)	375
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	2 cut(s)	416, 912
StuI	AGGCCT	1 cut(s)	1044
StyD4I	CCNGG	7 cut(s)	424, 460, 844, 1082, 1192, 1219, 1230
StyI	CCWWGG	1 cut(s)	280
TaqI	TCGA	2 cut(s)	131, 746
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	5 cut(s)	128, 172, 670, 794, 1321
Tru1I	TTAA	4 cut(s)	404, 611, 923, 1339
Tru9I	TTAA	4 cut(s)	404, 611, 923, 1339
TscAI	CASTG	1 cut(s)	985
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	2 cut(s)	389, 563
Tsp45I	GTSAC	1 cut(s)	682
TspRI	CASTG	1 cut(s)	985
VpaK11BI	GGWCC	2 cut(s)	367, 489
XapI	RAATTY	6 cut(s)	347, 749, 768, 974, 1102, 1156
XmnI	GAANNNNTTC	2 cut(s)	771, 804
XspI	CTAG	2 cut(s)	416, 912
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.