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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26450 AT4G26450 |
| fragaria_vesca | FvH4_3g41520 FvH4_3g41520 |
| malus_domestica | MD03G1043600.v1.1 MD11G1047100.v1.1 |
| prunus_persica | Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 |
| pyrus_communis | pycom03g03370 pycom11g03820 |
| rosa_chinensis | RchiOBHm_Chr5g0074471 |
| rosa_laevigata | RLG00000036482 |
| rosa_multiflora | Rmu_co8239039.1_g000001 Rmu_sc0001467.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00007030 |
| rosa_rugosa | Rorug05G0432100 Rorug05G0432200 Rorug05G0432200 Rorug05G0432300 |
| rosa_samantha | Rh5AG489400 Rh5BG510400 Rh5CG534200 Rh5DG523000 |
| rosa_wichuraiana | Rw5G045380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 662 |
| AatII | GACGTC | 1 cut(s) | 1875 |
| Acc36I | ACCTGC | 2 cut(s) | 251, 662 |
| AccB1I | GGYRCC | 1 cut(s) | 997 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 327 |
| AccBSI | CCGCTC | 1 cut(s) | 519 |
| AccIII | TCCGGA | 1 cut(s) | 1453 |
| AciI | CCGC | 6 cut(s) | 200, 240, 519, 599, 631, 1437 |
| AclI | AACGTT | 1 cut(s) | 901 |
| AclWI | GGATC | 9 cut(s) | 453, 466, 480, 529, 823, 895, 1375, 1445, 1820 |
| AcsI | RAATTY | 3 cut(s) | 75, 647, 986 |
| AcuI | CTGAAG | 3 cut(s) | 627, 1422, 1614 |
| AcyI | GRCGYC | 1 cut(s) | 1872 |
| AfaI | GTAC | 8 cut(s) | 35, 281, 701, 762, 1156, 1744, 1750, 2016 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 98, 327, 715, 1346, 1859, 2105 |
| AflIII | ACRYGT | 1 cut(s) | 1422 |
| AgeI | ACCGGT | 1 cut(s) | 217 |
| AgsI | TTSAA | 7 cut(s) | 475, 1091, 1181, 1199, 1420, 1483, 1982 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 574 |
| AjiI | CACGTC | 1 cut(s) | 158 |
| AjnI | CCWGG | 7 cut(s) | 374, 461, 708, 1339, 1582, 1828, 1935 |
| Alw26I | GTCTC | 5 cut(s) | 384, 545, 551, 1115, 1734 |
| AlwI | GGATC | 9 cut(s) | 453, 466, 480, 529, 823, 895, 1375, 1445, 1820 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 641, 1400 |
| Ama87I | CYCGRG | 4 cut(s) | 739, 1125, 1733, 2103 |
| Aor13HI | TCCGGA | 1 cut(s) | 1453 |
| AoxI | GGCC | 4 cut(s) | 1033, 1129, 1146, 1337 |
| ApeKI | GCWGC | 6 cut(s) | 193, 223, 416, 595, 1505, 1847 |
| ApoI | RAATTY | 3 cut(s) | 75, 647, 986 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 491, 523 |
| AseI | ATTAAT | 1 cut(s) | 1785 |
| AsiGI | ACCGGT | 1 cut(s) | 217 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2120 |
| AspS9I | GGNCC | 3 cut(s) | 1034, 1580, 2089 |
| AsuC2I | CCSGG | 1 cut(s) | 748 |
| AsuHPI | GGTGA | 8 cut(s) | 254, 575, 656, 686, 943, 1172, 1340, 1355 |
| AsuNHI | GCTAGC | 1 cut(s) | 617 |
| AvaI | CYCGRG | 4 cut(s) | 739, 1125, 1733, 2103 |
| AvaII | GGWCC | 2 cut(s) | 1580, 2089 |
| BamHI | GGATCC | 1 cut(s) | 458 |
| BanI | GGYRCC | 1 cut(s) | 997 |
| BbvI | GCAGC | 6 cut(s) | 180, 235, 403, 607, 1492, 1834 |
| BccI | CCATC | 6 cut(s) | 49, 434, 878, 903, 1661, 1894 |
| BciT130I | CCWGG | 7 cut(s) | 376, 463, 710, 1341, 1584, 1830, 1937 |
| BciVI | GTATCC | 2 cut(s) | 796, 1060 |
| BclI | TGATCA | 2 cut(s) | 922, 1798 |
| BcnI | CCSGG | 1 cut(s) | 748 |
| BcoDI | GTCTC | 5 cut(s) | 384, 545, 551, 1115, 1734 |
| BfaI | CTAG | 7 cut(s) | 9, 72, 269, 618, 801, 1643, 1722 |
| BfmI | CTRYAG | 2 cut(s) | 417, 445 |
| BfuAI | ACCTGC | 2 cut(s) | 251, 662 |
| BfuI | GTATCC | 2 cut(s) | 796, 1060 |
| BglII | AGATCT | 1 cut(s) | 38 |
| BisI | GCNGC | 7 cut(s) | 194, 224, 417, 596, 599, 1506, 1848 |
| BlpI | GCTNAGC | 1 cut(s) | 451 |
| BlsI | GCNGC | 7 cut(s) | 195, 225, 418, 597, 600, 1507, 1849 |
| BmcAI | AGTACT | 3 cut(s) | 281, 1156, 1750 |
| Bme1390I | CCNGG | 8 cut(s) | 376, 463, 710, 748, 1341, 1584, 1830, 1937 |
| Bme18I | GGWCC | 2 cut(s) | 1580, 2089 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 574 |
| BmeT110I | CYCGRG | 4 cut(s) | 739, 1125, 1733, 2103 |
| BmgBI | CACGTC | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 3 cut(s) | 1034, 1580, 2089 |
| BmiI | GGNNCC | 5 cut(s) | 460, 736, 999, 1942, 2090 |
| BmrFI | CCNGG | 8 cut(s) | 376, 463, 710, 748, 1341, 1584, 1830, 1937 |
| BmrI | ACTGGG | 1 cut(s) | 1236 |
| BmsI | GCATC | 4 cut(s) | 592, 901, 923, 1872 |
| BmtI | GCTAGC | 1 cut(s) | 621 |
| BmuI | ACTGGG | 1 cut(s) | 1236 |
| BpmI | CTGGAG | 4 cut(s) | 378, 396, 692, 2082 |
| Bpu10I | CCTNAGC | 1 cut(s) | 84 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 451 |
| BpuEI | CTTGAG | 3 cut(s) | 276, 366, 826 |
| BpuMI | CCSGG | 1 cut(s) | 748 |
| Bsa29I | ATCGAT | 2 cut(s) | 1114, 1866 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1701, 1797 |
| BsaHI | GRCGYC | 1 cut(s) | 1872 |
| BsaI | GGTCTC | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 4 cut(s) | 133, 145, 1583, 1936 |
| BsaWI | WCCGGW | 2 cut(s) | 217, 1453 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 98, 327, 715, 1346, 1859, 2105 |
| Bse118I | RCCGGY | 1 cut(s) | 217 |
| Bse1I | ACTGG | 6 cut(s) | 321, 565, 1162, 1242, 1573, 1944 |
| Bse3DI | GCAATG | 3 cut(s) | 25, 1768, 1828 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1701, 1797 |
| BseAI | TCCGGA | 1 cut(s) | 1453 |
| BseBI | CCWGG | 7 cut(s) | 376, 463, 710, 1341, 1584, 1830, 1937 |
| BseCI | ATCGAT | 2 cut(s) | 1114, 1866 |
| BseDI | CCNNGG | 4 cut(s) | 133, 145, 1583, 1936 |
| BseGI | GGATG | 7 cut(s) | 60, 406, 718, 865, 1663, 1761, 1798 |
| BseJI | GATNNNNATC | 2 cut(s) | 1701, 1797 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 98, 327, 715, 1346, 1859, 2105 |
| BseMI | GCAATG | 3 cut(s) | 25, 1768, 1828 |
| BseMII | CTCAG | 4 cut(s) | 75, 465, 546, 1267 |
| BseNI | ACTGG | 6 cut(s) | 321, 565, 1162, 1242, 1573, 1944 |
| BseRI | GAGGAG | 3 cut(s) | 201, 529, 1376 |
| BseXI | GCAGC | 6 cut(s) | 180, 235, 403, 607, 1492, 1834 |
| BsgI | GTGCAG | 2 cut(s) | 242, 1283 |
| BshFI | GGCC | 4 cut(s) | 1035, 1131, 1148, 1339 |
| BshNI | GGYRCC | 1 cut(s) | 997 |
| BshTI | ACCGGT | 1 cut(s) | 217 |
| BshVI | ATCGAT | 2 cut(s) | 1114, 1866 |
| BsiHKCI | CYCGRG | 4 cut(s) | 739, 1125, 1733, 2103 |
| BsiSI | CCGG | 3 cut(s) | 218, 747, 1454 |
| BslFI | GGGAC | 4 cut(s) | 180, 1859, 1937, 2102 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 98, 327, 715, 1346, 1859, 2105 |
| BsmAI | GTCTC | 5 cut(s) | 384, 545, 551, 1115, 1734 |
| BsmFI | GGGAC | 4 cut(s) | 180, 1859, 1937, 2102 |
| BsmI | GAATGC | 1 cut(s) | 1248 |
| BsnI | GGCC | 4 cut(s) | 1035, 1131, 1148, 1339 |
| Bso31I | GGTCTC | 1 cut(s) | 384 |
| BsoBI | CYCGRG | 4 cut(s) | 739, 1125, 1733, 2103 |
| Bsp13I | TCCGGA | 1 cut(s) | 1453 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 451 |
| BspACI | CCGC | 6 cut(s) | 200, 240, 519, 599, 631, 1437 |
| BspANI | GGCC | 4 cut(s) | 1035, 1131, 1148, 1339 |
| BspCNI | CTCAG | 4 cut(s) | 76, 464, 547, 1266 |
| BspDI | ATCGAT | 2 cut(s) | 1114, 1866 |
| BspEI | TCCGGA | 1 cut(s) | 1453 |
| BspHI | TCATGA | 1 cut(s) | 1896 |
| BspLI | GGNNCC | 5 cut(s) | 460, 736, 999, 1942, 2090 |
| BspMAI | CTGCAG | 1 cut(s) | 421 |
| BspMI | ACCTGC | 2 cut(s) | 251, 662 |
| BspOI | GCTAGC | 1 cut(s) | 621 |
| BspPI | GGATC | 9 cut(s) | 453, 466, 480, 529, 823, 895, 1375, 1445, 1820 |
| BspQI | GCTCTTC | 3 cut(s) | 585, 802, 1021 |
| BspT107I | GGYRCC | 1 cut(s) | 997 |
| BspTNI | GGTCTC | 1 cut(s) | 384 |
| BsrBI | CCGCTC | 1 cut(s) | 519 |
| BsrDI | GCAATG | 3 cut(s) | 25, 1768, 1828 |
| BsrFI | RCCGGY | 1 cut(s) | 217 |
| BsrI | ACTGG | 6 cut(s) | 321, 565, 1162, 1242, 1573, 1944 |
| BssAI | RCCGGY | 1 cut(s) | 217 |
| BssECI | CCNNGG | 4 cut(s) | 133, 145, 1583, 1936 |
| BssNI | GRCGYC | 1 cut(s) | 1872 |
| Bst2UI | CCWGG | 7 cut(s) | 376, 463, 710, 1341, 1584, 1830, 1937 |
| Bst6I | CTCTTC | 3 cut(s) | 585, 802, 1021 |
| BstACI | GRCGYC | 1 cut(s) | 1872 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 354, 603, 619, 2082 |
| BstDEI | CTNAG | 5 cut(s) | 84, 451, 555, 726, 1253 |
| BstDSI | CCRYGG | 2 cut(s) | 133, 145 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 96, 1344 |
| BstF5I | GGATG | 7 cut(s) | 60, 406, 718, 865, 1663, 1761, 1798 |
| BstMAI | GTCTC | 5 cut(s) | 384, 545, 551, 1115, 1734 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 10, 199, 416, 801, 1297 |
| BstNI | CCWGG | 7 cut(s) | 376, 463, 710, 1341, 1584, 1830, 1937 |
| BstNSI | RCATGY | 2 cut(s) | 8, 1426 |
| BstSCI | CCNGG | 8 cut(s) | 374, 461, 708, 746, 1339, 1582, 1828, 1935 |
| BstSFI | CTRYAG | 2 cut(s) | 417, 445 |
| BstV1I | GCAGC | 6 cut(s) | 180, 235, 403, 607, 1492, 1834 |
| BstX2I | RGATCY | 5 cut(s) | 38, 458, 485, 521, 887 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 134, 1139 |
| BstYI | RGATCY | 5 cut(s) | 38, 458, 485, 521, 887 |
| Bsu15I | ATCGAT | 2 cut(s) | 1114, 1866 |
| BsuI | GTATCC | 2 cut(s) | 796, 1060 |
| BsuRI | GGCC | 4 cut(s) | 1035, 1131, 1148, 1339 |
| BsuTUI | ATCGAT | 2 cut(s) | 1114, 1866 |
| BtgI | CCRYGG | 2 cut(s) | 133, 145 |
| BtrI | CACGTC | 1 cut(s) | 158 |
| BtsCI | GGATG | 7 cut(s) | 60, 406, 718, 865, 1663, 1761, 1798 |
| BtsI | GCAGTG | 2 cut(s) | 241, 1357 |
| BtsIMutI | CAGTG | 5 cut(s) | 241, 935, 1270, 1357, 1566 |
| BveI | ACCTGC | 2 cut(s) | 251, 662 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 354, 603, 619, 2082 |
| CaiI | CAGNNNCTG | 2 cut(s) | 641, 1400 |
| CciI | TCATGA | 1 cut(s) | 1896 |
| Cfr10I | RCCGGY | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 3 cut(s) | 1034, 1580, 2089 |
| ClaI | ATCGAT | 2 cut(s) | 1114, 1866 |
| CseI | GACGC | 3 cut(s) | 77, 177, 1641 |
| Csp6I | GTAC | 8 cut(s) | 34, 280, 700, 761, 1155, 1743, 1749, 2015 |
| CspAI | ACCGGT | 1 cut(s) | 217 |
| CviAII | CATG | 7 cut(s) | 5, 104, 253, 1423, 1526, 1897, 2047 |
| CviQI | GTAC | 8 cut(s) | 34, 280, 700, 761, 1155, 1743, 1749, 2015 |
| DdeI | CTNAG | 5 cut(s) | 84, 451, 555, 726, 1253 |
| DraI | TTTAAA | 1 cut(s) | 1429 |
| DriI | GACNNNNNGTC | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 3 cut(s) | 585, 802, 1021 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 574 |
| EarI | CTCTTC | 3 cut(s) | 585, 802, 1021 |
| EciI | GGCGGA | 1 cut(s) | 189 |
| Eco147I | AGGCCT | 1 cut(s) | 1339 |
| Eco31I | GGTCTC | 1 cut(s) | 384 |
| Eco47I | GGWCC | 2 cut(s) | 1580, 2089 |
| Eco57I | CTGAAG | 3 cut(s) | 627, 1422, 1614 |
| Eco88I | CYCGRG | 4 cut(s) | 739, 1125, 1733, 2103 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 96, 1344 |
| EcoRII | CCWGG | 7 cut(s) | 374, 461, 708, 1339, 1582, 1828, 1935 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 916 |
| FaeI | CATG | 7 cut(s) | 8, 107, 256, 1426, 1529, 1900, 2050 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 529, 561 |
| FaqI | GGGAC | 4 cut(s) | 180, 1859, 1937, 2102 |
| FatI | CATG | 7 cut(s) | 4, 103, 252, 1422, 1525, 1896, 2046 |
| FbaI | TGATCA | 2 cut(s) | 922, 1798 |
| Fnu4HI | GCNGC | 7 cut(s) | 194, 224, 417, 596, 599, 1506, 1848 |
| FokI | GGATG | 7 cut(s) | 67, 413, 725, 872, 1670, 1768, 1805 |
| Fsp4HI | GCNGC | 7 cut(s) | 194, 224, 417, 596, 599, 1506, 1848 |
| FspBI | CTAG | 7 cut(s) | 9, 72, 269, 618, 801, 1643, 1722 |
| GluI | GCNGC | 7 cut(s) | 194, 224, 417, 596, 599, 1506, 1848 |
| GsuI | CTGGAG | 4 cut(s) | 378, 396, 692, 2082 |
| HaeIII | GGCC | 4 cut(s) | 1035, 1131, 1148, 1339 |
| HapII | CCGG | 3 cut(s) | 218, 747, 1454 |
| HgaI | GACGC | 3 cut(s) | 77, 177, 1641 |
| Hin1I | GRCGYC | 1 cut(s) | 1872 |
| Hin1II | CATG | 7 cut(s) | 8, 107, 256, 1426, 1529, 1900, 2050 |
| HindIII | AAGCTT | 3 cut(s) | 543, 1040, 2082 |
| HpaII | CCGG | 3 cut(s) | 218, 747, 1454 |
| HphI | GGTGA | 8 cut(s) | 254, 575, 656, 686, 943, 1172, 1340, 1355 |
| Hpy99I | CGWCG | 1 cut(s) | 1657 |
| HpyAV | CCTTC | 8 cut(s) | 156, 474, 659, 785, 988, 1340, 1457, 1988 |
| HpyCH4IV | ACGT | 4 cut(s) | 157, 246, 901, 1872 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 223, 419, 914, 1028, 1300, 2080 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 10, 199, 416, 801, 1297 |
| HpyF3I | CTNAG | 5 cut(s) | 84, 451, 555, 726, 1253 |
| HpySE526I | ACGT | 4 cut(s) | 157, 246, 901, 1872 |
| Hsp92I | GRCGYC | 1 cut(s) | 1872 |
| Hsp92II | CATG | 7 cut(s) | 8, 107, 256, 1426, 1529, 1900, 2050 |
| Kpn2I | TCCGGA | 1 cut(s) | 1453 |
| Ksp22I | TGATCA | 2 cut(s) | 922, 1798 |
| LguI | GCTCTTC | 3 cut(s) | 585, 802, 1021 |
| LmnI | GCTCC | 6 cut(s) | 415, 516, 668, 1649, 1855, 1994 |
| Lsp1109I | GCAGC | 6 cut(s) | 180, 235, 403, 607, 1492, 1834 |
| LweI | GCATC | 4 cut(s) | 592, 901, 923, 1872 |
| MaeI | CTAG | 7 cut(s) | 9, 72, 269, 618, 801, 1643, 1722 |
| MaeII | ACGT | 4 cut(s) | 157, 246, 901, 1872 |
| MaeIII | GTNAC | 5 cut(s) | 242, 563, 1352, 1631, 2049 |
| MbiI | CCGCTC | 1 cut(s) | 519 |
| MflI | RGATCY | 5 cut(s) | 38, 458, 485, 521, 887 |
| MluCI | AATT | 8 cut(s) | 75, 340, 647, 986, 1078, 1231, 1286, 1786 |
| MlyI | GAGTC | 6 cut(s) | 494, 563, 692, 1060, 1117, 1887 |
| MmeI | TCCRAC | 2 cut(s) | 672, 1635 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 916 |
| MroI | TCCGGA | 1 cut(s) | 1453 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2120 |
| MseI | TTAA | 5 cut(s) | 141, 1428, 1539, 1623, 1785 |
| MslI | CAYNNNNRTG | 1 cut(s) | 495 |
| MspA1I | CMGCKG | 5 cut(s) | 193, 416, 455, 631, 1606 |
| MspI | CCGG | 3 cut(s) | 218, 747, 1454 |
| MspR9I | CCNGG | 8 cut(s) | 376, 463, 710, 748, 1341, 1584, 1830, 1937 |
| Mva1269I | GAATGC | 1 cut(s) | 1248 |
| MvaI | CCWGG | 7 cut(s) | 376, 463, 710, 1341, 1584, 1830, 1937 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 10, 199, 416, 801, 1297 |
| NciI | CCSGG | 1 cut(s) | 748 |
| NheI | GCTAGC | 1 cut(s) | 617 |
| NlaIII | CATG | 7 cut(s) | 8, 107, 256, 1426, 1529, 1900, 2050 |
| NlaIV | GGNNCC | 5 cut(s) | 460, 736, 999, 1942, 2090 |
| NmuCI | GTSAC | 5 cut(s) | 242, 563, 1352, 1631, 2049 |
| NsiI | ATGCAT | 2 cut(s) | 6, 916 |
| NspI | RCATGY | 2 cut(s) | 8, 1426 |
| PaeI | GCATGC | 1 cut(s) | 8 |
| PaeR7I | CTCGAG | 4 cut(s) | 739, 1125, 1733, 2103 |
| PagI | TCATGA | 1 cut(s) | 1896 |
| PaqCI | CACCTGC | 1 cut(s) | 662 |
| PceI | AGGCCT | 1 cut(s) | 1339 |
| PciI | ACATGT | 1 cut(s) | 1422 |
| PciSI | GCTCTTC | 3 cut(s) | 585, 802, 1021 |
| PctI | GAATGC | 1 cut(s) | 1248 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2120 |
| PfeI | GAWTC | 6 cut(s) | 677, 944, 1274, 1679, 1916, 2036 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 327 |
| PfoI | TCCNGGA | 3 cut(s) | 461, 708, 1828 |
| PinAI | ACCGGT | 1 cut(s) | 217 |
| PkrI | GCNGC | 7 cut(s) | 195, 225, 418, 597, 600, 1507, 1849 |
| PleI | GAGTC | 6 cut(s) | 494, 563, 691, 1059, 1117, 1887 |
| PpsI | GAGTC | 6 cut(s) | 494, 563, 691, 1059, 1117, 1887 |
| PscI | ACATGT | 1 cut(s) | 1422 |
| PshBI | ATTAAT | 1 cut(s) | 1785 |
| Psp1406I | AACGTT | 1 cut(s) | 901 |
| Psp6I | CCWGG | 7 cut(s) | 374, 461, 708, 1339, 1582, 1828, 1935 |
| PspGI | CCWGG | 7 cut(s) | 374, 461, 708, 1339, 1582, 1828, 1935 |
| PspN4I | GGNNCC | 5 cut(s) | 460, 736, 999, 1942, 2090 |
| PspPI | GGNCC | 3 cut(s) | 1034, 1580, 2089 |
| PspXI | VCTCGAGB | 3 cut(s) | 739, 1125, 2103 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 52, 84 |
| PstI | CTGCAG | 1 cut(s) | 421 |
| PstNI | CAGNNNCTG | 2 cut(s) | 641, 1400 |
| PsuI | RGATCY | 5 cut(s) | 38, 458, 485, 521, 887 |
| PvuII | CAGCTG | 4 cut(s) | 193, 416, 455, 1606 |
| RsaI | GTAC | 8 cut(s) | 35, 281, 701, 762, 1156, 1744, 1750, 2016 |
| RsaNI | GTAC | 8 cut(s) | 34, 280, 700, 761, 1155, 1743, 1749, 2015 |
| RseI | CAYNNNNRTG | 1 cut(s) | 495 |
| SapI | GCTCTTC | 3 cut(s) | 585, 802, 1021 |
| SaqAI | TTAA | 5 cut(s) | 141, 1428, 1539, 1623, 1785 |
| SatI | GCNGC | 7 cut(s) | 194, 224, 417, 596, 599, 1506, 1848 |
| Sau96I | GGNCC | 3 cut(s) | 1034, 1580, 2089 |
| ScaI | AGTACT | 3 cut(s) | 281, 1156, 1750 |
| SchI | GAGTC | 6 cut(s) | 494, 563, 692, 1060, 1117, 1887 |
| ScrFI | CCNGG | 8 cut(s) | 376, 463, 710, 748, 1341, 1584, 1830, 1937 |
| SfaNI | GCATC | 4 cut(s) | 592, 901, 923, 1872 |
| SfcI | CTRYAG | 2 cut(s) | 417, 445 |
| Sfr274I | CTCGAG | 4 cut(s) | 739, 1125, 1733, 2103 |
| SgrAI | CRCCGGYG | 1 cut(s) | 217 |
| SinI | GGWCC | 2 cut(s) | 1580, 2089 |
| SlaI | CTCGAG | 4 cut(s) | 739, 1125, 1733, 2103 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 495 |
| SmlI | CTYRAG | 7 cut(s) | 291, 381, 739, 805, 1125, 1733, 2103 |
| SmoI | CTYRAG | 7 cut(s) | 291, 381, 739, 805, 1125, 1733, 2103 |
| SphI | GCATGC | 1 cut(s) | 8 |
| Sse9I | AATT | 8 cut(s) | 75, 340, 647, 986, 1078, 1231, 1286, 1786 |
| SseBI | AGGCCT | 1 cut(s) | 1339 |
| SsiI | CCGC | 6 cut(s) | 200, 240, 519, 599, 631, 1437 |
| SspMI | CTAG | 7 cut(s) | 9, 72, 269, 618, 801, 1643, 1722 |
| StuI | AGGCCT | 1 cut(s) | 1339 |
| StyD4I | CCNGG | 8 cut(s) | 374, 461, 708, 746, 1339, 1582, 1828, 1935 |
| TaiI | ACGT | 4 cut(s) | 160, 249, 904, 1875 |
| TaqI | TCGA | 8 cut(s) | 740, 879, 1114, 1126, 1734, 1866, 2039, 2104 |
| TaqII | GACCGA | 1 cut(s) | 2001 |
| TasI | AATT | 8 cut(s) | 75, 340, 647, 986, 1078, 1231, 1286, 1786 |
| TatI | WGTACW | 5 cut(s) | 279, 699, 760, 1154, 1748 |
| TauI | GCSGC | 1 cut(s) | 601 |
| TfiI | GAWTC | 6 cut(s) | 677, 944, 1274, 1679, 1916, 2036 |
| Tru1I | TTAA | 5 cut(s) | 141, 1428, 1539, 1623, 1785 |
| Tru9I | TTAA | 5 cut(s) | 141, 1428, 1539, 1623, 1785 |
| TscAI | CASTG | 5 cut(s) | 241, 935, 1270, 1357, 1573 |
| TseFI | GTSAC | 5 cut(s) | 242, 563, 1352, 1631, 2049 |
| TseI | GCWGC | 6 cut(s) | 193, 223, 416, 595, 1505, 1847 |
| Tsp45I | GTSAC | 5 cut(s) | 242, 563, 1352, 1631, 2049 |
| TspDTI | ATGAA | 8 cut(s) | 241, 842, 957, 1179, 1425, 1542, 1902, 2035 |
| TspRI | CASTG | 5 cut(s) | 241, 935, 1270, 1357, 1573 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 327 |
| VpaK11BI | GGWCC | 2 cut(s) | 1580, 2089 |
| VspI | ATTAAT | 1 cut(s) | 1785 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 96, 1344 |
| XapI | RAATTY | 3 cut(s) | 75, 647, 986 |
| XbaI | TCTAGA | 1 cut(s) | 71 |
| XceI | RCATGY | 2 cut(s) | 8, 1426 |
| XhoI | CTCGAG | 4 cut(s) | 739, 1125, 1733, 2103 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2120 |
| XspI | CTAG | 7 cut(s) | 9, 72, 269, 618, 801, 1643, 1722 |
| ZraI | GACGTC | 1 cut(s) | 1873 |
| ZrmI | AGTACT | 3 cut(s) | 281, 1156, 1750 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 916 |