Rorug05G0432200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004367
Physical Location & Seq
Forward (+)
60103295 .. 60108751
5457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0432200.1

Sequence Viewer

Length: 459 bp
ATGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGTAGTGCAGCTGCTTATTTAGAGACGGGCATATTTTCATCATGGCGTTATTCTATTCTTTTGATTTCTTCTGTTCTTATCATCACATGGCTCAACTTAAGGTTGTGCATATTGAAGGGAGAGAGGTTTGAAGTGGAAGCAAATAAAAGAGGTTTGCATGCTTACAACCCAAATGAGGAGTATGCAGATGTGGAATCCACATTGCGTTCGCATTTGGAATCTTTTCTAGAAACTACAAGATCATTCAATATGATTTACACCAAGGAAATACGTCCCTGGACACACATGATGGAGGTACCCCAGCTCCATGGGTTCGGGCTTGCAGCCAATCGCTTATTGGAGGCATATAAGATGCTTTTGAAGAAACCTGTCGAGGATAATGTTGAGAAGAAGAAGAAAAGGAAAGAGATAGGGGAGGAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.69

Weight (kDa)

7.79

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_NMP1 PF06694 63 - 132 3.2e-37 Plant nuclear matrix protein 1 (NMP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 328
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 208
AflII CTTAAG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 148, 164, 280, 394
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 2 cut(s) 44, 337
AluI AGCT 2 cut(s) 44, 337
Alw26I GTCTC 1 cut(s) 50
ApeKI GCWGC 4 cut(s) 23, 41, 44, 356
Asp700I GAANNNNTTC 1 cut(s) 255
Asp718I GGTACC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 328
BbvI GCAGC 4 cut(s) 31, 35, 53, 368
BccI CCATC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 130
BisI GCNGC 4 cut(s) 24, 42, 45, 357
BlsI GCNGC 4 cut(s) 25, 43, 46, 358
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 294, 308, 340
BsaXI ACNNNNNCTCC 3 cut(s) 321, 351, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 294, 308, 340
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 4 cut(s) 31, 35, 53, 368
BseYI CCCAGC 1 cut(s) 333
BsgI GTGCAG 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 328
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 50
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 294, 308, 340
BssMI GATC 1 cut(s) 272
BssT1I CCWWGG 2 cut(s) 294, 340
Bst2UI CCWGG 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 192, 354
BstDSI CCRYGG 1 cut(s) 340
BstKTI GATC 1 cut(s) 275
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 31, 35, 53, 368
BstXI CCANNNNNNTGG 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 192, 354
Csp6I GTAC 1 cut(s) 329
CviAII CATG 6 cut(s) 11, 75, 120, 191, 319, 341
CviJI RGCY 5 cut(s) 44, 124, 337, 352, 359
CviKI_1 RGCY 5 cut(s) 44, 124, 337, 352, 359
CviQI GTAC 1 cut(s) 329
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
Eco130I CCWWGG 2 cut(s) 294, 340
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 2 cut(s) 294, 340
ErhI CCWWGG 2 cut(s) 294, 340
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 6 cut(s) 14, 78, 123, 194, 322, 344
FaqI GGGAC 1 cut(s) 291
FatI CATG 6 cut(s) 10, 74, 119, 190, 318, 340
Fnu4HI GCNGC 4 cut(s) 24, 42, 45, 357
Fsp4HI GCNGC 4 cut(s) 24, 42, 45, 357
FspBI CTAG 1 cut(s) 260
GluI GCNGC 4 cut(s) 24, 42, 45, 357
GsaI CCCAGC 1 cut(s) 337
Hin1II CATG 6 cut(s) 14, 78, 123, 194, 322, 344
HinfI GANTC 2 cut(s) 227, 251
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 260
HpyAV CCTTC 2 cut(s) 26, 142
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 41, 141, 190, 218, 356
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 6 cut(s) 14, 78, 123, 194, 322, 344
KpnI GGTACC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 342
LpnPI CCDG 4 cut(s) 295, 322, 347, 414
Lsp1109I GCAGC 4 cut(s) 31, 35, 53, 368
LweI GCATC 1 cut(s) 375
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 304
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 5 cut(s) 93, 406, 433, 436, 439
MnlI CCTC 8 cut(s) 150, 176, 202, 319, 367, 400, 442, 447
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
NcoI CCATGG 1 cut(s) 340
NdeII GATC 1 cut(s) 272
NlaIII CATG 6 cut(s) 14, 78, 123, 194, 322, 344
NlaIV GGNNCC 1 cut(s) 330
NspI RCATGY 1 cut(s) 194
PaeI GCATGC 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 227, 251
PkrI GCNGC 4 cut(s) 25, 43, 46, 358
Psp6I CCWGG 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 333
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 4 cut(s) 24, 42, 45, 357
Sau3AI GATC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 310
SfaNI GCATC 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SphI GCATGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 294, 340
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 405
TfiI GAWTC 2 cut(s) 227, 251
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseI GCWGC 4 cut(s) 23, 41, 44, 356
TspDTI ATGAA 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.