Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8239039.1

Orthogroup ID

OG0004367

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 724

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8239039.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggacgcgggccggatggcggcggagtatctggtggcgcaggggctgctgccggcgagcgtgctgtcggcaaagtggcagaagaagcagcaggtagagtttgagggtgatcacatgagagaggaggggaggacgtcggcgctttcccgattaggaaatgtttcggagggaggagggtacagaagaggaaggtttgggggtgtggatgagttcagtagtaatgcgaggaataaggggaggaggaggaaccggggcggcgggtatgggtcggatacccggcccgattggtatgggaggagtgggacgttttcggataggcatagtagggcttcttctgagtgtgaggatgattctgcttctgggaggcatgaggagcacaaggtggggagagatgttgggaatgcaagggagagtgaggatgcagtggattcggagacgaaggaggatatgagctcgaagccgagttcttctggtgcaaatgggagtgacggagttgttgttggagtaaatgtggagcccaacaaggtgaatgatgtagagatgaaggataaggattgtggcaatggtgatgaaactgagaaacagagtgttgtggaggagttgccggctcaggttaaggccgatggagagggggatttgggtggtaggaatggcactgatttgttgaaactatgcaaattcgccaaggtgcctactagaattcgctcggcattgactactagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.03

Weight (kDa)

5.73

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26450 AT4G26450
fragaria_vesca	FvH4_3g41520 FvH4_3g41520
malus_domestica	MD03G1043600.v1.1 MD11G1047100.v1.1
prunus_persica	Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1
pyrus_communis	pycom03g03370 pycom11g03820
rosa_chinensis	RchiOBHm_Chr5g0074471
rosa_laevigata	RLG00000036482
rosa_multiflora	Rmu_co8239039.1_g000001 Rmu_sc0001467.1_g000022
rosa_roxburghii	Rroxscaffold_1G00007030
rosa_rugosa	Rorug05G0432100 Rorug05G0432200 Rorug05G0432200 Rorug05G0432300
rosa_samantha	Rh5AG489400 Rh5BG510400 Rh5CG534200 Rh5DG523000
rosa_wichuraiana	Rw5G045380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	688
AccII	CGCG	1 cut(s)	8
AciI	CCGC	5 cut(s)	8, 20, 23, 255, 258
AcsI	RAATTY	2 cut(s)	677, 699
AcyI	GRCGYC	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	382
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	667
AluBI	AGCT	1 cut(s)	453
AluI	AGCT	1 cut(s)	453
Alw21I	GWGCWC	2 cut(s)	378, 455
Alw26I	GTCTC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	3 cut(s)	10, 278, 618
ApeKI	GCWGC	3 cut(s)	46, 49, 88
ApoI	RAATTY	2 cut(s)	677, 699
Asp700I	GAANNNNTTC	1 cut(s)	160
AspLEI	GCGC	2 cut(s)	40, 142
AspS9I	GGNCC	2 cut(s)	10, 279
AsuC2I	CCSGG	2 cut(s)	251, 277
AsuHPI	GGTGA	3 cut(s)	119, 538, 578
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	2 cut(s)	455, 519
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
Bbv12I	GWGCWC	2 cut(s)	378, 455
BbvI	GCAGC	3 cut(s)	33, 36, 100
BccI	CCATC	2 cut(s)	10, 617
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciVI	GTATCC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	251, 277
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	696, 720
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	82
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	5 cut(s)	21, 47, 50, 89, 256
BlsI	GCNGC	5 cut(s)	22, 48, 51, 90, 257
Bme1390I	CCNGG	2 cut(s)	251, 277
BmgT120I	GGNCC	2 cut(s)	10, 279
BmiI	GGNNCC	3 cut(s)	248, 516, 690
BmrFI	CCNGG	2 cut(s)	251, 277
BmsI	GCATC	1 cut(s)	409
Bpu10I	CCTNAGC	1 cut(s)	609
BpuMI	CCSGG	2 cut(s)	251, 277
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	250, 684
BsaXI	ACNNNNNCTCC	4 cut(s)	483, 495, 513, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse118I	RCCGGY	2 cut(s)	52, 604
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	250, 684
BseGI	GGATG	4 cut(s)	21, 211, 352, 424
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	3 cut(s)	327, 567, 623
BseRI	GAGGAG	7 cut(s)	137, 186, 253, 256, 310, 386, 611
BseXI	GCAGC	3 cut(s)	33, 36, 100
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	12, 280, 620
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	2 cut(s)	378, 455
BsiSI	CCGG	5 cut(s)	13, 53, 250, 277, 605
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	428
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	12, 280, 620
Bsp1286I	GDGCHC	3 cut(s)	378, 455, 519
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	5 cut(s)	8, 20, 23, 255, 258
BspANI	GGCC	3 cut(s)	12, 280, 620
BspCNI	CTCAG	3 cut(s)	328, 568, 622
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	248, 516, 690
BspMI	ACCTGC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	568
BsrFI	RCCGGY	2 cut(s)	52, 604
BssAI	RCCGGY	2 cut(s)	52, 604
BssECI	CCNNGG	2 cut(s)	250, 684
BssMI	GATC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	684
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	5 cut(s)	10, 54, 58, 62, 606
BstDEI	CTNAG	3 cut(s)	336, 576, 609
BstF5I	GGATG	4 cut(s)	21, 211, 352, 424
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	40, 142
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 85, 373
BstSCI	CCNGG	2 cut(s)	249, 275
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	33, 36, 100
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	12, 280, 620
BtsCI	GGATG	4 cut(s)	21, 211, 352, 424
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	429, 654
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	5 cut(s)	10, 54, 58, 62, 606
CaiI	CAGNNNCTG	1 cut(s)	46
CfoI	GCGC	2 cut(s)	40, 142
Cfr10I	RCCGGY	2 cut(s)	52, 604
Cfr13I	GGNCC	2 cut(s)	10, 279
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	115, 368
CviJI	RGCY	9 cut(s)	12, 46, 280, 329, 453, 460, 517, 608, 620
CviKI_1	RGCY	9 cut(s)	12, 46, 280, 329, 453, 460, 517, 608, 620
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	336, 576, 609
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	684
Eco24I	GRGCYC	2 cut(s)	455, 519
Eco53kI	GAGCTC	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	684
EcoT38I	GRGCYC	2 cut(s)	455, 519
ErhI	CCWWGG	1 cut(s)	684
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	2 cut(s)	118, 371
FaiI	YATR	7 cut(s)	116, 264, 291, 321, 369, 449, 673
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	114, 367
FauI	CCCGC	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	5 cut(s)	21, 47, 50, 89, 256
FokI	GGATG	4 cut(s)	28, 218, 359, 431
FriOI	GRGCYC	2 cut(s)	455, 519
Fsp4HI	GCNGC	5 cut(s)	21, 47, 50, 89, 256
FspBI	CTAG	2 cut(s)	696, 720
GlaI	GCGC	2 cut(s)	39, 141
GluI	GCNGC	5 cut(s)	21, 47, 50, 89, 256
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	12, 280, 620
HapII	CCGG	5 cut(s)	13, 53, 250, 277, 605
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	40, 142
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	118, 371
Hin6I	GCGC	2 cut(s)	38, 140
HinP1I	GCGC	2 cut(s)	38, 140
HinfI	GANTC	2 cut(s)	350, 428
HpaII	CCGG	5 cut(s)	13, 53, 250, 277, 605
HphI	GGTGA	3 cut(s)	119, 538, 578
Hpy188I	TCNGA	5 cut(s)	166, 271, 313, 337, 433
Hpy188III	TCNNGA	1 cut(s)	147
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	183, 433, 538
HpyCH4IV	ACGT	2 cut(s)	134, 305
HpyCH4V	TGCA	4 cut(s)	404, 422, 476, 675
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 85, 373
HpyF3I	CTNAG	3 cut(s)	336, 576, 609
HpySE526I	ACGT	2 cut(s)	134, 305
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	118, 371
HspAI	GCGC	2 cut(s)	38, 140
KroI	GCCGGC	2 cut(s)	52, 604
KroNI	GCCGGC	2 cut(s)	54, 606
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	373, 514
Lsp1109I	GCAGC	3 cut(s)	33, 36, 100
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	696, 720
MaeII	ACGT	2 cut(s)	134, 305
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	4 cut(s)	94, 195, 324, 459
MhlI	GDGCHC	3 cut(s)	378, 455, 519
MluCI	AATT	2 cut(s)	677, 699
MmeI	TCCRAC	2 cut(s)	249, 481
MroNI	GCCGGC	2 cut(s)	52, 604
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	615
MspI	CCGG	5 cut(s)	13, 53, 250, 277, 605
MspR9I	CCNGG	2 cut(s)	251, 277
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	46, 85, 373
NaeI	GCCGGC	2 cut(s)	54, 606
NciI	CCSGG	2 cut(s)	251, 277
NdeII	GATC	1 cut(s)	109
NgoMIV	GCCGGC	2 cut(s)	52, 604
NlaIII	CATG	2 cut(s)	118, 371
NlaIV	GGNNCC	3 cut(s)	248, 516, 690
NmeAIII	GCCGAG	2 cut(s)	486, 686
NmuCI	GTSAC	1 cut(s)	485
PctI	GAATGC	1 cut(s)	406
PdiI	GCCGGC	2 cut(s)	54, 606
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	350, 428
PkrI	GCNGC	5 cut(s)	22, 48, 51, 90, 257
Psp124BI	GAGCTC	1 cut(s)	455
PspN4I	GGNNCC	3 cut(s)	248, 516, 690
PspPI	GGNCC	2 cut(s)	10, 279
PstNI	CAGNNNCTG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	5 cut(s)	21, 47, 50, 89, 256
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	2 cut(s)	10, 279
ScrFI	CCNGG	2 cut(s)	251, 277
SduI	GDGCHC	3 cut(s)	378, 455, 519
SetI	ASST	9 cut(s)	96, 137, 194, 308, 384, 455, 528, 615, 690
SfaNI	GCATC	1 cut(s)	409
Sse9I	AATT	2 cut(s)	677, 699
SsiI	CCGC	5 cut(s)	8, 20, 23, 255, 258
SspMI	CTAG	2 cut(s)	696, 720
SstI	GAGCTC	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	249, 275
StyI	CCWWGG	1 cut(s)	684
TaiI	ACGT	2 cut(s)	137, 308
TaqI	TCGA	1 cut(s)	455
TasI	AATT	2 cut(s)	677, 699
TauI	GCSGC	2 cut(s)	23, 258
TfiI	GAWTC	2 cut(s)	350, 428
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	2 cut(s)	429, 661
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	3 cut(s)	46, 49, 88
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	557, 585
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	429, 661
XapI	RAATTY	2 cut(s)	677, 699
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	2 cut(s)	696, 720
ZraI	GACGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.