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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26450 AT4G26450 |
| fragaria_vesca | FvH4_3g41520 FvH4_3g41520 |
| malus_domestica | MD03G1043600.v1.1 MD11G1047100.v1.1 |
| prunus_persica | Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 Prupe.6G035900_v2.0.a1 |
| pyrus_communis | pycom03g03370 pycom11g03820 |
| rosa_chinensis | RchiOBHm_Chr5g0074471 |
| rosa_laevigata | RLG00000036482 |
| rosa_multiflora | Rmu_co8239039.1_g000001 Rmu_sc0001467.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00007030 |
| rosa_rugosa | Rorug05G0432100 Rorug05G0432200 Rorug05G0432200 Rorug05G0432300 |
| rosa_samantha | Rh5AG489400 Rh5BG510400 Rh5CG534200 Rh5DG523000 |
| rosa_wichuraiana | Rw5G045380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1127 |
| Acc36I | ACCTGC | 2 cut(s) | 862, 1717 |
| Acc65I | GGTACC | 1 cut(s) | 1187 |
| AccB1I | GGYRCC | 3 cut(s) | 246, 1033, 1187 |
| AccBSI | CCGCTC | 1 cut(s) | 1050 |
| AccI | GTMKAC | 1 cut(s) | 1864 |
| AccII | CGCG | 1 cut(s) | 150 |
| AclWI | GGATC | 6 cut(s) | 92, 523, 891, 1079, 1754, 2109 |
| AcoI | YGGCCR | 1 cut(s) | 157 |
| AcsI | RAATTY | 7 cut(s) | 412, 461, 1022, 1270, 1552, 1693, 1967 |
| AcuI | CTGAAG | 1 cut(s) | 2073 |
| AcyI | GRCGYC | 2 cut(s) | 247, 1128 |
| AfaI | GTAC | 3 cut(s) | 35, 1189, 2094 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1871 |
| AhlI | ACTAGT | 2 cut(s) | 320, 2009 |
| AjnI | CCWGG | 3 cut(s) | 22, 1339, 2213 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1421, 1453, 2071, 2103 |
| Alw21I | GWGCWC | 1 cut(s) | 1613 |
| Alw26I | GTCTC | 4 cut(s) | 89, 546, 1229, 2141 |
| AlwI | GGATC | 6 cut(s) | 92, 523, 891, 1079, 1754, 2109 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 280, 965, 1289 |
| AoxI | GGCC | 7 cut(s) | 109, 157, 382, 713, 760, 2128, 2210 |
| ApeKI | GCWGC | 6 cut(s) | 280, 283, 468, 946, 956, 2221 |
| ApoI | RAATTY | 7 cut(s) | 412, 461, 1022, 1270, 1552, 1693, 1967 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 682, 714 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 485, 1697 |
| Asp718I | GGTACC | 1 cut(s) | 1187 |
| AspLEI | GCGC | 1 cut(s) | 249 |
| AsuC2I | CCSGG | 1 cut(s) | 10 |
| AsuHPI | GGTGA | 9 cut(s) | 626, 857, 983, 989, 1436, 1589, 1627, 1661, 1865 |
| AvaII | GGWCC | 8 cut(s) | 39, 806, 821, 1070, 1110, 1286, 1326, 1379 |
| AxyI | CCTNAGG | 1 cut(s) | 985 |
| BaeGI | GKGCMC | 1 cut(s) | 1038 |
| BanI | GGYRCC | 3 cut(s) | 246, 1033, 1187 |
| BanII | GRGCYC | 1 cut(s) | 1613 |
| Bbv12I | GWGCWC | 1 cut(s) | 1613 |
| BbvCI | CCTCAGC | 1 cut(s) | 966 |
| BbvI | GCAGC | 6 cut(s) | 267, 270, 480, 943, 958, 2233 |
| BccI | CCATC | 5 cut(s) | 55, 419, 812, 1637, 2027 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 720, 754, 1648, 1682, 2147, 2181 |
| BciT130I | CCWGG | 3 cut(s) | 24, 1341, 2215 |
| BclI | TGATCA | 2 cut(s) | 1450, 1600 |
| BcnI | CCSGG | 1 cut(s) | 10 |
| BcoDI | GTCTC | 4 cut(s) | 89, 546, 1229, 2141 |
| BcuI | ACTAGT | 2 cut(s) | 320, 2009 |
| BfaI | CTAG | 3 cut(s) | 321, 1041, 2010 |
| BfmI | CTRYAG | 2 cut(s) | 957, 1383 |
| BfoI | RGCGCY | 1 cut(s) | 250 |
| BfuAI | ACCTGC | 2 cut(s) | 862, 1717 |
| BglII | AGATCT | 1 cut(s) | 1704 |
| BisI | GCNGC | 9 cut(s) | 160, 194, 255, 281, 284, 469, 947, 957, 2222 |
| BlsI | GCNGC | 9 cut(s) | 161, 195, 256, 282, 285, 470, 948, 958, 2223 |
| Bme1390I | CCNGG | 4 cut(s) | 10, 24, 1341, 2215 |
| Bme18I | GGWCC | 8 cut(s) | 39, 806, 821, 1070, 1110, 1286, 1326, 1379 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1871 |
| BmrFI | CCNGG | 4 cut(s) | 10, 24, 1341, 2215 |
| BmrI | ACTGGG | 1 cut(s) | 1324 |
| BmsI | GCATC | 9 cut(s) | 22, 383, 655, 718, 933, 1668, 1726, 1933, 2155 |
| BmuI | ACTGGG | 1 cut(s) | 1324 |
| BpmI | CTGGAG | 5 cut(s) | 168, 189, 679, 1478, 2000 |
| Bpu10I | CCTNAGC | 2 cut(s) | 966, 1391 |
| BpuEI | CTTGAG | 1 cut(s) | 1555 |
| BpuMI | CCSGG | 1 cut(s) | 10 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1758 |
| BsaHI | GRCGYC | 2 cut(s) | 247, 1128 |
| BsaJI | CCNNGG | 6 cut(s) | 48, 809, 858, 1029, 2213, 2214 |
| Bse1I | ACTGG | 4 cut(s) | 696, 1254, 1330, 1563 |
| Bse21I | CCTNAGG | 1 cut(s) | 985 |
| Bse3DI | GCAATG | 1 cut(s) | 680 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1758 |
| BseBI | CCWGG | 3 cut(s) | 24, 1341, 2215 |
| BseDI | CCNNGG | 6 cut(s) | 48, 809, 858, 1029, 2213, 2214 |
| BseGI | GGATG | 3 cut(s) | 66, 430, 733 |
| BseJI | GATNNNNATC | 1 cut(s) | 1758 |
| BseMI | GCAATG | 1 cut(s) | 680 |
| BseMII | CTCAG | 9 cut(s) | 95, 249, 287, 670, 903, 957, 999, 1262, 1388 |
| BseNI | ACTGG | 4 cut(s) | 696, 1254, 1330, 1563 |
| BseRI | GAGGAG | 4 cut(s) | 514, 659, 1965, 2159 |
| BseSI | GKGCMC | 1 cut(s) | 1038 |
| BseXI | GCAGC | 6 cut(s) | 267, 270, 480, 943, 958, 2233 |
| BseYI | CCCAGC | 1 cut(s) | 2062 |
| Bsh1236I | CGCG | 1 cut(s) | 150 |
| BshFI | GGCC | 7 cut(s) | 111, 159, 384, 715, 762, 2130, 2212 |
| BshNI | GGYRCC | 3 cut(s) | 246, 1033, 1187 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1613 |
| BsiSI | CCGG | 2 cut(s) | 10, 385 |
| BslFI | GGGAC | 5 cut(s) | 561, 1012, 1123, 1312, 1392 |
| BsmAI | GTCTC | 4 cut(s) | 89, 546, 1229, 2141 |
| BsmFI | GGGAC | 5 cut(s) | 561, 1012, 1123, 1312, 1392 |
| BsmI | GAATGC | 1 cut(s) | 298 |
| BsnI | GGCC | 7 cut(s) | 111, 159, 384, 715, 762, 2130, 2212 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1038, 1613 |
| Bsp19I | CCATGG | 1 cut(s) | 48 |
| BspANI | GGCC | 7 cut(s) | 111, 159, 384, 715, 762, 2130, 2212 |
| BspCNI | CTCAG | 9 cut(s) | 96, 250, 286, 669, 904, 958, 998, 1261, 1387 |
| BspFNI | CGCG | 1 cut(s) | 150 |
| BspMAI | CTGCAG | 1 cut(s) | 961 |
| BspMI | ACCTGC | 2 cut(s) | 862, 1717 |
| BspPI | GGATC | 6 cut(s) | 92, 523, 891, 1079, 1754, 2109 |
| BspT107I | GGYRCC | 3 cut(s) | 246, 1033, 1187 |
| BsrBI | CCGCTC | 1 cut(s) | 1050 |
| BsrDI | GCAATG | 1 cut(s) | 680 |
| BsrI | ACTGG | 4 cut(s) | 696, 1254, 1330, 1563 |
| BssECI | CCNNGG | 6 cut(s) | 48, 809, 858, 1029, 2213, 2214 |
| BssNI | GRCGYC | 2 cut(s) | 247, 1128 |
| BssT1I | CCWWGG | 4 cut(s) | 48, 809, 858, 1029 |
| Bst2UI | CCWGG | 3 cut(s) | 24, 1341, 2215 |
| Bst4CI | ACNGT | 3 cut(s) | 1571, 1862, 1873 |
| BstACI | GRCGYC | 2 cut(s) | 247, 1128 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 1126, 1657 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 604, 2206 |
| BstF5I | GGATG | 3 cut(s) | 66, 430, 733 |
| BstFNI | CGCG | 1 cut(s) | 150 |
| BstH2I | RGCGCY | 1 cut(s) | 250 |
| BstHHI | GCGC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 4 cut(s) | 89, 546, 1229, 2141 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 10, 123, 156, 199, 302, 962, 2218, 2230 |
| BstNI | CCWGG | 3 cut(s) | 24, 1341, 2215 |
| BstNSI | RCATGY | 1 cut(s) | 8 |
| BstSCI | CCNGG | 4 cut(s) | 8, 22, 1339, 2213 |
| BstSFI | CTRYAG | 2 cut(s) | 957, 1383 |
| BstSLI | GKGCMC | 1 cut(s) | 1038 |
| BstUI | CGCG | 1 cut(s) | 150 |
| BstV1I | GCAGC | 6 cut(s) | 267, 270, 480, 943, 958, 2233 |
| BstX2I | RGATCY | 3 cut(s) | 84, 1704, 2101 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 49, 55, 1482, 1643 |
| BstYI | RGATCY | 3 cut(s) | 84, 1704, 2101 |
| Bsu36I | CCTNAGG | 1 cut(s) | 985 |
| BsuRI | GGCC | 7 cut(s) | 111, 159, 384, 715, 762, 2130, 2212 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 3 cut(s) | 66, 430, 733 |
| BtsI | GCAGTG | 1 cut(s) | 738 |
| BtsIMutI | CAGTG | 3 cut(s) | 738, 1556, 1869 |
| BveI | ACCTGC | 2 cut(s) | 862, 1717 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 1126, 1657 |
| CaiI | CAGNNNCTG | 3 cut(s) | 280, 965, 1289 |
| CfoI | GCGC | 1 cut(s) | 249 |
| CseI | GACGC | 3 cut(s) | 1069, 1117, 1130 |
| Csp6I | GTAC | 3 cut(s) | 34, 1188, 2093 |
| CviAII | CATG | 9 cut(s) | 5, 49, 67, 641, 1448, 1495, 1723, 1742, 1997 |
| CviQI | GTAC | 3 cut(s) | 34, 1188, 2093 |
| DinI | GGCGCC | 1 cut(s) | 248 |
| DraI | TTTAAA | 1 cut(s) | 327 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1127 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1871 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1127 |
| EaeI | YGGCCR | 1 cut(s) | 157 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1871 |
| EciI | GGCGGA | 4 cut(s) | 180, 189, 201, 292 |
| Ecl136II | GAGCTC | 1 cut(s) | 1611 |
| Eco130I | CCWWGG | 4 cut(s) | 48, 809, 858, 1029 |
| Eco24I | GRGCYC | 1 cut(s) | 1613 |
| Eco32I | GATATC | 1 cut(s) | 2017 |
| Eco47I | GGWCC | 8 cut(s) | 39, 806, 821, 1070, 1110, 1286, 1326, 1379 |
| Eco53kI | GAGCTC | 1 cut(s) | 1611 |
| Eco57I | CTGAAG | 1 cut(s) | 2073 |
| Eco81I | CCTNAGG | 1 cut(s) | 985 |
| EcoICRI | GAGCTC | 1 cut(s) | 1611 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 604, 2206 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1286, 1326, 1379, 2211 |
| EcoRI | GAATTC | 2 cut(s) | 412, 1693 |
| EcoRII | CCWGG | 3 cut(s) | 22, 1339, 2213 |
| EcoRV | GATATC | 1 cut(s) | 2017 |
| EcoT14I | CCWWGG | 4 cut(s) | 48, 809, 858, 1029 |
| EcoT22I | ATGCAT | 3 cut(s) | 6, 682, 2118 |
| EcoT38I | GRGCYC | 1 cut(s) | 1613 |
| EgeI | GGCGCC | 1 cut(s) | 248 |
| EheI | GGCGCC | 1 cut(s) | 248 |
| ErhI | CCWWGG | 4 cut(s) | 48, 809, 858, 1029 |
| FaeI | CATG | 9 cut(s) | 8, 52, 70, 644, 1451, 1498, 1726, 1745, 2000 |
| FaqI | GGGAC | 5 cut(s) | 561, 1012, 1123, 1312, 1392 |
| FatI | CATG | 9 cut(s) | 4, 48, 66, 640, 1447, 1494, 1722, 1741, 1996 |
| FauI | CCCGC | 3 cut(s) | 224, 235, 2238 |
| FbaI | TGATCA | 2 cut(s) | 1450, 1600 |
| FblI | GTMKAC | 1 cut(s) | 1864 |
| Fnu4HI | GCNGC | 9 cut(s) | 160, 194, 255, 281, 284, 469, 947, 957, 2222 |
| FokI | GGATG | 3 cut(s) | 73, 437, 740 |
| FriOI | GRGCYC | 1 cut(s) | 1613 |
| Fsp4HI | GCNGC | 9 cut(s) | 160, 194, 255, 281, 284, 469, 947, 957, 2222 |
| FspBI | CTAG | 3 cut(s) | 321, 1041, 2010 |
| GlaI | GCGC | 1 cut(s) | 248 |
| GluI | GCNGC | 9 cut(s) | 160, 194, 255, 281, 284, 469, 947, 957, 2222 |
| GsaI | CCCAGC | 1 cut(s) | 2066 |
| GsuI | CTGGAG | 5 cut(s) | 168, 189, 679, 1478, 2000 |
| HaeII | RGCGCY | 1 cut(s) | 250 |
| HaeIII | GGCC | 7 cut(s) | 111, 159, 384, 715, 762, 2130, 2212 |
| HapII | CCGG | 2 cut(s) | 10, 385 |
| HgaI | GACGC | 3 cut(s) | 1069, 1117, 1130 |
| HhaI | GCGC | 1 cut(s) | 249 |
| Hin1I | GRCGYC | 2 cut(s) | 247, 1128 |
| Hin1II | CATG | 9 cut(s) | 8, 52, 70, 644, 1451, 1498, 1726, 1745, 2000 |
| Hin6I | GCGC | 1 cut(s) | 247 |
| HinP1I | GCGC | 1 cut(s) | 247 |
| HincII | GTYRAC | 1 cut(s) | 1822 |
| HindII | GTYRAC | 1 cut(s) | 1822 |
| HindIII | AAGCTT | 1 cut(s) | 1149 |
| HpaII | CCGG | 2 cut(s) | 10, 385 |
| HphI | GGTGA | 9 cut(s) | 626, 857, 983, 989, 1436, 1589, 1627, 1661, 1865 |
| Hpy166II | GTNNAC | 2 cut(s) | 1822, 1865 |
| Hpy8I | GTNNAC | 2 cut(s) | 1822, 1865 |
| Hpy99I | CGWCG | 2 cut(s) | 1133, 2162 |
| HpyAV | CCTTC | 7 cut(s) | 374, 432, 438, 614, 874, 1945, 2141 |
| HpyCH4III | ACNGT | 3 cut(s) | 1571, 1862, 1873 |
| HpyCH4IV | ACGT | 1 cut(s) | 1144 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 10, 123, 156, 199, 302, 962, 2218, 2230 |
| HpySE526I | ACGT | 1 cut(s) | 1144 |
| Hsp92I | GRCGYC | 2 cut(s) | 247, 1128 |
| Hsp92II | CATG | 9 cut(s) | 8, 52, 70, 644, 1451, 1498, 1726, 1745, 2000 |
| HspAI | GCGC | 1 cut(s) | 247 |
| KasI | GGCGCC | 1 cut(s) | 246 |
| KpnI | GGTACC | 1 cut(s) | 1191 |
| Ksp22I | TGATCA | 2 cut(s) | 1450, 1600 |
| LmnI | GCTCC | 7 cut(s) | 76, 131, 193, 214, 646, 1813, 2218 |
| Lsp1109I | GCAGC | 6 cut(s) | 267, 270, 480, 943, 958, 2233 |
| LweI | GCATC | 9 cut(s) | 22, 383, 655, 718, 933, 1668, 1726, 1933, 2155 |
| MaeI | CTAG | 3 cut(s) | 321, 1041, 2010 |
| MaeII | ACGT | 1 cut(s) | 1144 |
| MaeIII | GTNAC | 1 cut(s) | 1498 |
| MbiI | CCGCTC | 1 cut(s) | 1050 |
| MboII | GAAGA | 5 cut(s) | 792, 1454, 1574, 1807, 2079 |
| MflI | RGATCY | 3 cut(s) | 84, 1704, 2101 |
| MhlI | GDGCHC | 2 cut(s) | 1038, 1613 |
| Mly113I | GGCGCC | 1 cut(s) | 247 |
| MlyI | GAGTC | 2 cut(s) | 1907, 2143 |
| Mph1103I | ATGCAT | 3 cut(s) | 6, 682, 2118 |
| MroXI | GAANNNNTTC | 2 cut(s) | 485, 1697 |
| MseI | TTAA | 7 cut(s) | 326, 1158, 1413, 1716, 1881, 2106, 2198 |
| MslI | CAYNNNNRTG | 2 cut(s) | 53, 233 |
| MspA1I | CMGCKG | 2 cut(s) | 257, 1456 |
| MspI | CCGG | 2 cut(s) | 10, 385 |
| MspR9I | CCNGG | 4 cut(s) | 10, 24, 1341, 2215 |
| Mva1269I | GAATGC | 1 cut(s) | 298 |
| MvaI | CCWGG | 3 cut(s) | 24, 1341, 2215 |
| MvnI | CGCG | 1 cut(s) | 150 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 10, 123, 156, 199, 302, 962, 2218, 2230 |
| NarI | GGCGCC | 1 cut(s) | 247 |
| NciI | CCSGG | 1 cut(s) | 10 |
| NcoI | CCATGG | 1 cut(s) | 48 |
| NlaIII | CATG | 9 cut(s) | 8, 52, 70, 644, 1451, 1498, 1726, 1745, 2000 |
| NsiI | ATGCAT | 3 cut(s) | 6, 682, 2118 |
| NspI | RCATGY | 1 cut(s) | 8 |
| PaeI | GCATGC | 1 cut(s) | 8 |
| PasI | CCCWGGG | 1 cut(s) | 2214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1128 |
| PctI | GAATGC | 1 cut(s) | 298 |
| PdmI | GAANNNNTTC | 2 cut(s) | 485, 1697 |
| PfeI | GAWTC | 9 cut(s) | 481, 737, 743, 980, 1044, 1280, 1367, 1625, 1747 |
| PfoI | TCCNGGA | 1 cut(s) | 22 |
| PkrI | GCNGC | 9 cut(s) | 161, 195, 256, 282, 285, 470, 948, 958, 2223 |
| PleI | GAGTC | 2 cut(s) | 1907, 2143 |
| PluTI | GGCGCC | 1 cut(s) | 250 |
| PpsI | GAGTC | 2 cut(s) | 1907, 2143 |
| PpuMI | RGGWCCY | 3 cut(s) | 1286, 1326, 1379 |
| Psp124BI | GAGCTC | 1 cut(s) | 1613 |
| Psp5II | RGGWCCY | 3 cut(s) | 1286, 1326, 1379 |
| Psp6I | CCWGG | 3 cut(s) | 22, 1339, 2213 |
| PspFI | CCCAGC | 1 cut(s) | 2062 |
| PspGI | CCWGG | 3 cut(s) | 22, 1339, 2213 |
| PspPPI | RGGWCCY | 3 cut(s) | 1286, 1326, 1379 |
| PstI | CTGCAG | 1 cut(s) | 961 |
| PstNI | CAGNNNCTG | 3 cut(s) | 280, 965, 1289 |
| PsuI | RGATCY | 3 cut(s) | 84, 1704, 2101 |
| PvuII | CAGCTG | 1 cut(s) | 1456 |
| RsaI | GTAC | 3 cut(s) | 35, 1189, 2094 |
| RsaNI | GTAC | 3 cut(s) | 34, 1188, 2093 |
| RseI | CAYNNNNRTG | 2 cut(s) | 53, 233 |
| SacI | GAGCTC | 1 cut(s) | 1613 |
| SaqAI | TTAA | 7 cut(s) | 326, 1158, 1413, 1716, 1881, 2106, 2198 |
| SatI | GCNGC | 9 cut(s) | 160, 194, 255, 281, 284, 469, 947, 957, 2222 |
| SchI | GAGTC | 2 cut(s) | 1907, 2143 |
| ScrFI | CCNGG | 4 cut(s) | 10, 24, 1341, 2215 |
| SduI | GDGCHC | 2 cut(s) | 1038, 1613 |
| SfaNI | GCATC | 9 cut(s) | 22, 383, 655, 718, 933, 1668, 1726, 1933, 2155 |
| SfcI | CTRYAG | 2 cut(s) | 957, 1383 |
| SfoI | GGCGCC | 1 cut(s) | 248 |
| SinI | GGWCC | 8 cut(s) | 39, 806, 821, 1070, 1110, 1286, 1326, 1379 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 53, 233 |
| SmlI | CTYRAG | 1 cut(s) | 1534 |
| SmoI | CTYRAG | 1 cut(s) | 1534 |
| SpeI | ACTAGT | 2 cut(s) | 320, 2009 |
| SphI | GCATGC | 1 cut(s) | 8 |
| SspDI | GGCGCC | 1 cut(s) | 246 |
| SspMI | CTAG | 3 cut(s) | 321, 1041, 2010 |
| SstI | GAGCTC | 1 cut(s) | 1613 |
| StyD4I | CCNGG | 4 cut(s) | 8, 22, 1339, 2213 |
| StyI | CCWWGG | 4 cut(s) | 48, 809, 858, 1029 |
| TaaI | ACNGT | 3 cut(s) | 1571, 1862, 1873 |
| TaiI | ACGT | 1 cut(s) | 1147 |
| TaqI | TCGA | 3 cut(s) | 1131, 1662, 1875 |
| TauI | GCSGC | 3 cut(s) | 162, 196, 257 |
| TfiI | GAWTC | 9 cut(s) | 481, 737, 743, 980, 1044, 1280, 1367, 1625, 1747 |
| Tru1I | TTAA | 7 cut(s) | 326, 1158, 1413, 1716, 1881, 2106, 2198 |
| Tru9I | TTAA | 7 cut(s) | 326, 1158, 1413, 1716, 1881, 2106, 2198 |
| TscAI | CASTG | 3 cut(s) | 738, 1563, 1876 |
| TseI | GCWGC | 6 cut(s) | 280, 283, 468, 946, 956, 2221 |
| TspRI | CASTG | 3 cut(s) | 738, 1563, 1876 |
| VpaK11BI | GGWCC | 8 cut(s) | 39, 806, 821, 1070, 1110, 1286, 1326, 1379 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 604, 2206 |
| XapI | RAATTY | 7 cut(s) | 412, 461, 1022, 1270, 1552, 1693, 1967 |
| XceI | RCATGY | 1 cut(s) | 8 |
| XmiI | GTMKAC | 1 cut(s) | 1864 |
| XmnI | GAANNNNTTC | 2 cut(s) | 485, 1697 |
| XspI | CTAG | 3 cut(s) | 321, 1041, 2010 |
| Zsp2I | ATGCAT | 3 cut(s) | 6, 682, 2118 |