Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Forward (+)

13452117 .. 13454139

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGGCGAACGATTCTTCAAATGCTATTGACATCGACGGGAATCTCGACTCCGATTCGAATCTTAACACTGACGGTGACGAAGCGACCGATAATGATTCCTCGAAGGCATTGGTTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTCGCCGGAGATGCTGCTGGTGGCGCCGTTATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGAAGAAAGGCTTCAAAGGATCATTTGCAGATGCAGGGCAGTCTGCTAAGACTTTTGCTGTTTTATCTGGAGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGCCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTCCACAGGCTCTTCTACAGAGTTGTCTCACGTTTGGGGCATTCTCTTTTATTCTTGAGGGACTCAACAAAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGTTCCAAGATCATCATCGTGCTTTACCACTCTCTCTTGCTCTCCCGATCCCTGAAGAAATCAAAGGAGCCTTTTCTTCTTTCTGCAAGTCCTTAGCTAAACCAAGGAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

210

Amino Acids

21.81

Weight (kDa)

7.63

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	48 - 148	3.9e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	244, 559
AcuI	CTGAAG	2 cut(s)	335, 591
AcyI	GRCGYC	2 cut(s)	174, 339
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	21, 217, 232
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	2 cut(s)	479, 614
AluI	AGCT	2 cut(s)	479, 614
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	3 cut(s)	428, 496, 499
AlwI	GGATC	2 cut(s)	244, 559
ApeKI	GCWGC	1 cut(s)	164
AseI	ATTAAT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	151
BceAI	ACGGC	2 cut(s)	119, 161
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	3 cut(s)	428, 496, 499
BfmI	CTRYAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	2 cut(s)	6, 165
BlsI	GCNGC	2 cut(s)	7, 166
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	175, 586
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	151, 238
BpmI	CTGGAG	2 cut(s)	114, 306
Bpu10I	CCTNAGC	1 cut(s)	610
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	473
BsaBI	GATNNNNATC	2 cut(s)	60, 531
BsaHI	GRCGYC	2 cut(s)	174, 339
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	3 cut(s)	325, 391, 620
BsaWI	WCCGGW	2 cut(s)	147, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	376
Bse8I	GATNNNNATC	2 cut(s)	60, 531
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	325, 391, 620
BseJI	GATNNNNATC	2 cut(s)	60, 531
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	3 cut(s)	148, 156, 513
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	3 cut(s)	428, 496, 499
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	188, 400
Bsp143I	GATC	3 cut(s)	236, 526, 564
BspACI	CCGC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	175, 586
BspPI	GGATC	2 cut(s)	244, 559
BspQI	GCTCTTC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	325, 391, 620
BssMI	GATC	3 cut(s)	236, 526, 564
BssNI	GRCGYC	2 cut(s)	174, 339
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	3 cut(s)	77, 296, 519
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	2 cut(s)	174, 339
BstBI	TTCGAA	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	264, 383, 610
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	239, 529, 567
BstMAI	GTCTC	3 cut(s)	428, 496, 499
BstMBI	GATC	3 cut(s)	236, 526, 564
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 173, 404
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	69, 369
CfoI	GCGC	1 cut(s)	176
CseI	GACGC	1 cut(s)	347
CviJI	RGCY	7 cut(s)	134, 186, 228, 407, 479, 587, 614
CviKI_1	RGCY	7 cut(s)	134, 186, 228, 407, 479, 587, 614
DdeI	CTNAG	3 cut(s)	264, 383, 610
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	3 cut(s)	238, 528, 566
DpnII	GATC	3 cut(s)	236, 526, 564
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	335, 591
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	188
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	620
FaiI	YATR	2 cut(s)	182, 201
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	6, 165
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	6, 165
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	6, 165
GsuI	CTGGAG	2 cut(s)	114, 306
HaeII	RGCGCY	1 cut(s)	177
HapII	CCGG	3 cut(s)	148, 156, 513
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	174, 339
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	8 cut(s)	14, 43, 50, 56, 61, 98, 288, 459
HpaII	CCGG	3 cut(s)	148, 156, 513
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	4 cut(s)	55, 197, 315, 326
Hpy188III	TCNNGA	6 cut(s)	47, 207, 217, 285, 452, 562
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	100, 320
HpyCH4III	ACNGT	3 cut(s)	77, 296, 519
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	4 cut(s)	245, 251, 369, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 173, 404
HpyF3I	CTNAG	3 cut(s)	264, 383, 610
HpySE526I	ACGT	1 cut(s)	428
Hsp92I	GRCGYC	2 cut(s)	174, 339
HspAI	GCGC	1 cut(s)	174
KasI	GGCGCC	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	236, 526, 564
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	3 cut(s)	133, 403, 584
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	151, 238
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	77, 115
MalI	GATC	3 cut(s)	238, 528, 566
MboI	GATC	3 cut(s)	236, 526, 564
MboII	GAAGA	6 cut(s)	9, 184, 232, 401, 584, 585
MhlI	GDGCHC	2 cut(s)	188, 400
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	3 cut(s)	44, 297, 453
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	3 cut(s)	112, 320, 448
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	66, 345
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	3 cut(s)	148, 156, 513
MspR9I	CCNGG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	161, 173, 404
NarI	GGCGCC	1 cut(s)	174
NdeII	GATC	3 cut(s)	236, 526, 564
NlaIV	GGNNCC	2 cut(s)	175, 586
NmuCI	GTSAC	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 87
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	5 cut(s)	14, 43, 56, 61, 98
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	7, 166
PleI	GAGTC	3 cut(s)	44, 296, 453
PluTI	GGCGCC	1 cut(s)	177
PpsI	GAGTC	3 cut(s)	44, 296, 453
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	175, 586
RseI	CAYNNNNRTG	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	66, 345
SatI	GCNGC	2 cut(s)	6, 165
Sau3AI	GATC	3 cut(s)	236, 526, 564
SchI	GAGTC	3 cut(s)	44, 297, 453
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	188, 400
SetI	ASST	3 cut(s)	431, 481, 616
SfaNI	GCATC	2 cut(s)	151, 238
SfcI	CTRYAG	1 cut(s)	413
SfoI	GGCGCC	1 cut(s)	175
SfuI	TTCGAA	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SsiI	CCGC	1 cut(s)	5
SspDI	GGCGCC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	77, 296, 519
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	4 cut(s)	36, 48, 59, 104
TaqII	GACCGA	2 cut(s)	104, 481
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	14, 43, 56, 61, 98
Tru1I	TTAA	2 cut(s)	66, 345
Tru9I	TTAA	2 cut(s)	66, 345
TscAI	CASTG	2 cut(s)	76, 376
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	77
TspRI	CASTG	2 cut(s)	76, 376
Van91I	CCANNNNNTGG	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.