Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8490549.1

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

574 .. 2512

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8490549.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 428 bp

gtgcgggtttggtcaagaaaaaaggcttcaaaggatcctttgcagaagcaggatcttatgctaagacatttgcagttttgtctggagtgcacagtttggttgtctgcattttgaagaggcttcgaggaaaggatgatgtcattaatgcaggagtagctggatgttgtaccggtctcgcccttagttttccaggtgcaccccagcaacttctacaaagttgtctcacttttggggccttttcatttattcttgaaggctttaataagcagcagccagctctggcacaatcatttcctctgagaatcaaaagtgaagaacgtccttcattggtgctccctcttcaactatcacttactggggaactgaaagagggtttcaccgctttctgtaactccttgaaaaatcacaagggcactcgcacagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

141

Amino Acids

14.96

Weight (kDa)

9.64

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 380
AclWI	GGATC	3 cut(s)	29, 42, 60
AfaI	GTAC	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	5 cut(s)	30, 114, 253, 343, 399
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	157, 277
AluI	AGCT	2 cut(s)	157, 277
Alw21I	GWGCWC	3 cut(s)	92, 198, 335
Alw26I	GTCTC	2 cut(s)	178, 226
Alw44I	GTGCAC	2 cut(s)	88, 194
AlwI	GGATC	3 cut(s)	29, 42, 60
AoxI	GGCC	1 cut(s)	233
ApaLI	GTGCAC	2 cut(s)	88, 194
ApeKI	GCWGC	2 cut(s)	267, 270
AseI	ATTAAT	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	369
BaeGI	GKGCMC	3 cut(s)	92, 198, 415
BamHI	GGATCC	1 cut(s)	34
Bbv12I	GWGCWC	3 cut(s)	92, 198, 335
BbvI	GCAGC	2 cut(s)	279, 282
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	178, 226
BisI	GCNGC	2 cut(s)	268, 271
BlsI	GCNGC	2 cut(s)	269, 272
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	36, 234
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	178
BsaWI	WCCGGW	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	138, 166
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	360
BseSI	GKGCMC	3 cut(s)	92, 198, 415
BseXI	GCAGC	2 cut(s)	279, 282
BseYI	CCCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	235
BshTI	ACCGGT	1 cut(s)	169
BsiHKAI	GWGCWC	3 cut(s)	92, 198, 335
BsiSI	CCGG	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	178, 226
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	4 cut(s)	92, 198, 335, 415
Bsp143I	GATC	2 cut(s)	34, 52
BspACI	CCGC	2 cut(s)	4, 380
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	36, 234
BspPI	GGATC	3 cut(s)	29, 42, 60
BspTNI	GGTCTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	2 cut(s)	34, 52
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	2 cut(s)	109, 344
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	3 cut(s)	62, 181, 298
BstF5I	GGATG	2 cut(s)	138, 166
BstKTI	GATC	2 cut(s)	37, 55
BstMAI	GTCTC	2 cut(s)	178, 226
BstMBI	GATC	2 cut(s)	34, 52
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSLI	GKGCMC	3 cut(s)	92, 198, 415
BstV1I	GCAGC	2 cut(s)	279, 282
BstX2I	RGATCY	2 cut(s)	34, 52
BstYI	RGATCY	2 cut(s)	34, 52
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	138, 166
Cac8I	GCNNGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	167
CspAI	ACCGGT	1 cut(s)	169
CviJI	RGCY	8 cut(s)	26, 120, 157, 235, 257, 273, 277, 424
CviKI_1	RGCY	8 cut(s)	26, 120, 157, 235, 257, 273, 277, 424
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	3 cut(s)	62, 181, 298
DpnI	GATC	2 cut(s)	36, 54
DpnII	GATC	2 cut(s)	34, 52
Eam1104I	CTCTTC	2 cut(s)	109, 344
EarI	CTCTTC	2 cut(s)	109, 344
Eco31I	GGTCTC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	189
FaiI	YATR	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	268, 271
FokI	GGATG	2 cut(s)	145, 173
Fsp4HI	GCNGC	2 cut(s)	268, 271
GluI	GCNGC	2 cut(s)	268, 271
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	170
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	2 cut(s)	90, 196
Hpy188I	TCNGA	1 cut(s)	299
Hpy188III	TCNNGA	3 cut(s)	15, 83, 250
Hpy8I	GTNNAC	2 cut(s)	90, 196
HpyAV	CCTTC	2 cut(s)	247, 332
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	43, 73, 90, 107, 148, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	3 cut(s)	62, 181, 298
HpySE526I	ACGT	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	34, 52
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	2 cut(s)	279, 282
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	36, 54
MboI	GATC	2 cut(s)	34, 52
MboII	GAAGA	3 cut(s)	126, 325, 331
MflI	RGATCY	2 cut(s)	34, 52
MhlI	GDGCHC	4 cut(s)	92, 198, 335, 415
MnlI	CCTC	5 cut(s)	110, 118, 305, 347, 363
MseI	TTAA	2 cut(s)	143, 260
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	34, 52
NlaIV	GGNNCC	2 cut(s)	36, 234
PfeI	GAWTC	1 cut(s)	302
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	269, 272
PshBI	ATTAAT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	36, 234
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	34, 52
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	143, 260
SatI	GCNGC	2 cut(s)	268, 271
Sau3AI	GATC	2 cut(s)	34, 52
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	4 cut(s)	92, 198, 335, 415
SetI	ASST	4 cut(s)	159, 195, 279, 321
SsiI	CCGC	2 cut(s)	4, 380
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	143, 260
Tru9I	TTAA	2 cut(s)	143, 260
TseI	GCWGC	2 cut(s)	267, 270
TspDTI	ATGAA	2 cut(s)	230, 314
VneI	GTGCAC	2 cut(s)	88, 194
VspI	ATTAAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.