Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

38731773 .. 38734995

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG286000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCGCCGCGTCGCCGTTGGATCCTCCGAAACCCGACGCCGAAGCCGCCGACACCGACCCAAACCCTAACCCTACTAATCCTTCAAACGCGTTATTCCCTGTTTCCCCAAACGGCTCTGCTGTCTGCCTTCTCCGGTTCGCTGGGGACTCCGCCGGCGGCGCATTCATGGGCTCCATCTTTGGCTATGGTGCGGGTTTGGTCAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAAGCAGGATCTTATGCTAAGACATTTGCAGTTTTGTCTGGAGTGCACAGTTTGGTTGTCTGCATTTTGAAGAGGCTTCGAGGAAAGGATGATGTCATTAATGCAGGAGTAGCTGGATGTTGTACCGGTCTCGCCCTTAGTTTTCCAGGTGCACCCCAGCAACTTCTACAAAGTTGTCTCACTTTTGGGGCCTTTTCATTTATTCTTGAAGGCTTTAATAAGCAGCAGCCAGCTCTGGCACAATCATTTCCTCTGAGAATCAAAAGTGAAGAACGTCCCTCATTGGTGCTCCCTCTTCAACTATCACTTACTGGGGAACTGAAAGAGGGTTTCACCGCTTTCTGTAACTCCTTGAAAAATCACAAGGGCACTCGCACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

205

Amino Acids

21.28

Weight (kDa)

8.94

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	49 - 144	9.6e-15	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	11, 92
AciI	CCGC	7 cut(s)	6, 9, 48, 153, 159, 194, 570
AclWI	GGATC	5 cut(s)	17, 30, 219, 232, 250
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	90
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	87, 304, 443, 533, 589
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	2 cut(s)	347, 467
AluI	AGCT	2 cut(s)	347, 467
Alw21I	GWGCWC	3 cut(s)	282, 388, 525
Alw26I	GTCTC	2 cut(s)	368, 416
Alw44I	GTGCAC	2 cut(s)	278, 384
AlwI	GGATC	5 cut(s)	17, 30, 219, 232, 250
AoxI	GGCC	2 cut(s)	3, 423
ApaLI	GTGCAC	2 cut(s)	278, 384
ApeKI	GCWGC	2 cut(s)	457, 460
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	559
BaeGI	GKGCMC	3 cut(s)	282, 388, 605
BamHI	GGATCC	2 cut(s)	22, 224
BanII	GRGCYC	1 cut(s)	176
Bbv12I	GWGCWC	3 cut(s)	282, 388, 525
BbvI	GCAGC	2 cut(s)	469, 472
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	368, 416
BisI	GCNGC	6 cut(s)	6, 9, 48, 160, 458, 461
BlsI	GCNGC	6 cut(s)	7, 10, 49, 161, 459, 462
Bme1390I	CCNGG	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	4 cut(s)	24, 175, 226, 424
BmrFI	CCNGG	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	368
BsaWI	WCCGGW	2 cut(s)	135, 359
Bse118I	RCCGGY	2 cut(s)	155, 359
Bse1I	ACTGG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	328, 356
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	550
BseSI	GKGCMC	3 cut(s)	282, 388, 605
BseXI	GCAGC	2 cut(s)	469, 472
BseYI	CCCAGC	2 cut(s)	143, 390
Bsh1236I	CGCG	2 cut(s)	11, 92
BshFI	GGCC	2 cut(s)	5, 425
BshTI	ACCGGT	1 cut(s)	359
BsiHKAI	GWGCWC	3 cut(s)	282, 388, 525
BsiSI	CCGG	3 cut(s)	136, 156, 360
BslFI	GGGAC	2 cut(s)	161, 495
BsmAI	GTCTC	2 cut(s)	368, 416
BsmFI	GGGAC	2 cut(s)	161, 495
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	5, 425
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	5 cut(s)	176, 282, 388, 525, 605
Bsp143I	GATC	3 cut(s)	22, 224, 242
BspACI	CCGC	7 cut(s)	6, 9, 48, 153, 159, 194, 570
BspANI	GGCC	2 cut(s)	5, 425
BspCNI	CTCAG	1 cut(s)	480
BspFNI	CGCG	2 cut(s)	11, 92
BspLI	GGNNCC	4 cut(s)	24, 175, 226, 424
BspPI	GGATC	5 cut(s)	17, 30, 219, 232, 250
BspTNI	GGTCTC	1 cut(s)	368
BsrFI	RCCGGY	2 cut(s)	155, 359
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	2 cut(s)	155, 359
BssMI	GATC	3 cut(s)	22, 224, 242
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	299, 534
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	157, 465
BstDEI	CTNAG	3 cut(s)	252, 371, 488
BstF5I	GGATG	2 cut(s)	328, 356
BstFNI	CGCG	2 cut(s)	11, 92
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	25, 227, 245
BstMAI	GTCTC	2 cut(s)	368, 416
BstMBI	GATC	3 cut(s)	22, 224, 242
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 161, 344
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstSLI	GKGCMC	3 cut(s)	282, 388, 605
BstUI	CGCG	2 cut(s)	11, 92
BstV1I	GCAGC	2 cut(s)	469, 472
BstX2I	RGATCY	3 cut(s)	22, 224, 242
BstYI	RGATCY	3 cut(s)	22, 224, 242
BsuRI	GGCC	2 cut(s)	5, 425
BtsCI	GGATG	2 cut(s)	328, 356
Cac8I	GCNNGC	2 cut(s)	157, 465
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	155, 359
Cfr13I	GGNCC	1 cut(s)	423
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	357
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	3 cut(s)	252, 371, 488
DpnI	GATC	3 cut(s)	24, 226, 244
DpnII	GATC	3 cut(s)	22, 224, 242
DraI	TTTAAA	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	299, 534
EarI	CTCTTC	2 cut(s)	299, 534
EciI	GGCGGA	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	176
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	170, 189, 249
FaqI	GGGAC	2 cut(s)	161, 495
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	6 cut(s)	6, 9, 48, 160, 458, 461
FokI	GGATG	2 cut(s)	335, 363
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	6 cut(s)	6, 9, 48, 160, 458, 461
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	6 cut(s)	6, 9, 48, 160, 458, 461
GsaI	CCCAGC	2 cut(s)	147, 394
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	5, 425
HapII	CCGG	3 cut(s)	136, 156, 360
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	149, 492
HpaII	CCGG	3 cut(s)	136, 156, 360
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	280, 386
Hpy188I	TCNGA	2 cut(s)	30, 489
Hpy188III	TCNNGA	3 cut(s)	205, 273, 440
Hpy8I	GTNNAC	2 cut(s)	280, 386
Hpy99I	CGWCG	2 cut(s)	16, 41
HpyAV	CCTTC	3 cut(s)	93, 140, 437
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	6 cut(s)	233, 263, 280, 297, 338, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 161, 344
HpyF3I	CTNAG	3 cut(s)	252, 371, 488
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	22, 224, 242
LmnI	GCTCC	2 cut(s)	179, 528
Lsp1109I	GCAGC	2 cut(s)	469, 472
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	3 cut(s)	24, 226, 244
MboI	GATC	3 cut(s)	22, 224, 242
MboII	GAAGA	3 cut(s)	316, 515, 521
MflI	RGATCY	3 cut(s)	22, 224, 242
MhlI	GDGCHC	5 cut(s)	176, 282, 388, 525, 605
MluI	ACGCGT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	7 cut(s)	36, 300, 308, 495, 523, 537, 553
MreI	CGCCGGCG	1 cut(s)	155
MroNI	GCCGGC	1 cut(s)	155
MseI	TTAA	3 cut(s)	219, 333, 450
MspI	CCGG	3 cut(s)	136, 156, 360
MspR9I	CCNGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	2 cut(s)	11, 92
MwoI	GCNNNNNNNGC	3 cut(s)	47, 161, 344
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	22, 224, 242
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	4 cut(s)	24, 175, 226, 424
PctI	GAATGC	1 cut(s)	164
PdiI	GCCGGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	492
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	6 cut(s)	7, 10, 49, 161, 459, 462
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	2 cut(s)	143, 390
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	4 cut(s)	24, 175, 226, 424
PspPI	GGNCC	1 cut(s)	423
PsuI	RGATCY	3 cut(s)	22, 224, 242
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	219, 333, 450
SatI	GCNGC	6 cut(s)	6, 9, 48, 160, 458, 461
Sau3AI	GATC	3 cut(s)	22, 224, 242
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	5 cut(s)	176, 282, 388, 525, 605
SetI	ASST	4 cut(s)	349, 385, 469, 511
SgrAI	CRCCGGYG	1 cut(s)	155
SsiI	CCGC	7 cut(s)	6, 9, 48, 153, 159, 194, 570
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	313
TauI	GCSGC	4 cut(s)	8, 11, 50, 162
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	3 cut(s)	219, 333, 450
Tru9I	TTAA	3 cut(s)	219, 333, 450
TseI	GCWGC	2 cut(s)	457, 460
TspDTI	ATGAA	2 cut(s)	157, 420
VneI	GTGCAC	2 cut(s)	278, 384
VspI	ATTAAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.