Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

1623288 .. 1625120

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1006500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTGAAGAGGCTACGAGGAAAGGATGATGTCATTAATGCTGGAGTAGTTGGATGTTGTACTCGTCTTGCTCTTAGTTTTCCAGGTGCAACCCAAGCTCTTCTACAAGGCTGTCTCACTTTTGGGGCATTCTCATTTGTTATTAAAGGCCTAAACAAGCAGCAGTCGGCTTTAGCTCAACCATTTTCTGTGAGGAAGAAAAGTGAGCAAGTTCGAAGTTCGTACCTTGGTGCTCACCCTTCAACTTTCACTCTTAGGAGAACTAAAAGCGGGTTTCACCTTCTTTTGCAATTCCTTGAAGAATCGCAAGAAGGGCACTTCTCACCCAGCCTAAAAAAGGTTGTTCCAGAAAGGTGGCACAGCTTGGACCTCTTTATGAGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

129

Amino Acids

14.3

Weight (kDa)

10.18

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	381
AfaI	GTAC	2 cut(s)	61, 224
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	7, 243, 299
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	98, 176, 363
AluI	AGCT	3 cut(s)	98, 176, 363
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	381
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	3 cut(s)	227, 269, 315
AsuII	TTCGAA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	31, 59
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	235, 318
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	84
Bst6I	CTCTTC	2 cut(s)	2, 105
BstBI	TTCGAA	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	74, 254
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	31, 59
BstMAI	GTCTC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 313
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	31, 59
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	60, 223
CviJI	RGCY	8 cut(s)	13, 98, 111, 150, 170, 176, 330, 363
CviKI_1	RGCY	8 cut(s)	13, 98, 111, 150, 170, 176, 330, 363
CviQI	GTAC	2 cut(s)	60, 223
DdeI	CTNAG	2 cut(s)	74, 254
Eam1104I	CTCTTC	2 cut(s)	2, 105
EarI	CTCTTC	2 cut(s)	2, 105
Eco130I	CCWWGG	1 cut(s)	226
Eco147I	AGGCCT	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaiI	YATR	1 cut(s)	377
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	38, 66
Fsp4HI	GCNGC	1 cut(s)	161
GluI	GCNGC	1 cut(s)	161
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	3 cut(s)	227, 269, 315
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	249, 290, 305
HpyCH4V	TGCA	2 cut(s)	89, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 313
HpyF3I	CTNAG	2 cut(s)	74, 254
LguI	GCTCTTC	1 cut(s)	105
LpnPI	CCDG	5 cut(s)	27, 69, 96, 340, 360
Lsp1109I	GCAGC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	19, 92, 208, 311
MhlI	GDGCHC	2 cut(s)	235, 318
MluCI	AATT	2 cut(s)	290, 381
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	3, 11, 186, 380
MseI	TTAA	2 cut(s)	36, 144
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	95, 313
NspV	TTCGAA	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	367
RsaI	GTAC	2 cut(s)	61, 224
RsaNI	GTAC	2 cut(s)	60, 223
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	36, 144
SatI	GCNGC	1 cut(s)	161
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	235, 318
SetI	ASST	9 cut(s)	88, 100, 178, 228, 282, 342, 356, 365, 372
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	367
Sse9I	AATT	2 cut(s)	290, 381
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	226
TaqI	TCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	290, 381
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	36, 144
Tru9I	TTAA	2 cut(s)	36, 144
TseI	GCWGC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.