Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

19771393 .. 19773177

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGTTTCAATGTCAAAACCTCGAGCAGGAATGAGAGATAGGATAAGTGCATTACCAGATGCACTTCTTTCTCACATACTCTCTTTCCTGCCAACACTATGTGCTGTGAGGACCAGCATTTTGTCTGTAAGATGGAGGAACGTGTGGACTTCTCTTCCCAATCTAGACTTTGATGACGTAAGAGATTCATTTGATGTCCCGATTGGTCCCAATGACAAGATTACTTTTACGACGTTTGTTGATCGTGTATTTCTATACCGTGATTCATCTGAAATTAAAAAGCTTGGTCTTAAAATATTGTATTCTAAAGATTTTTCTCGTATCAATGATTGGATTTGCACAGCCGTTTGGCGTAATGTTGTTGAAATTGATCTTTGTCTCTCTTGTCAAGAAGAGGATTTTCAGTTCCCCCAGAGCCTTTTCATGTGCAAAACTCTGAAGGTTTTTAAATTGTATTCAAATCTTAGGACCATTAAGTATCCTCCTCCTCTTCCAGGGTGTTTTCCAAACCTTAAGTTCCTCCATGTTGAATTTGATTATCCGGATCGGGACTCACTGAAAATTTTGTCTACTCGCTGCCCTATGCTTGAAGAGTTGGCTATATTTGGATCAATTGAGTTTGGCGATGTTTGTGATATCAACGTATTTGCGCCTGAATTGAAGAAGTTGAGAATAGGTGTGCATGATCTTGATGGGAACTGCAATTTTTCTATTAATGCCCCAAAGCTTGAATACATTGATATCGAGGCAGCCTGTCTATCAAGTTATTATTTGGAAAACGCAAACGGCCTAGTCACTGCCAGTGTTTTGTATTATGGAGTTGAAGAAGAATACCAACTGTTCTTTCTCAACGGTTTAGCTGCGCTTCTGTCACAAATAACAAATGTCAATCATCTCTCTCTTGACATTTGTGATCCTTGTCTTGAGGTTTGGTATCATCCTTTTTATTTCAGTAATTTGAACCAAATGAAGCTGGTACTTCGTGATTCCCATTACTGGGAAGTTCTAGCACTGCTGCTCAAAAAATCACCTAAACTCGTAAATCTTACCTTAGTAGATAATACTATATTTCGAAATTATGATGAGCATTCATTGCCACAATGGGAGCAACCAGAGTCTGTTCCTGTTTGTTTGTTGAGAAACCTCAGCAGCATCACCATAAAGGGGTTTAGGGGTCATCAGGGTGAGATGGATGTAGCACAGTACATGTTAAAGAACGGTCATGTTTTGAATAAGATGACAATCTACACTGACTACACAGGAAATCTGTATAAAAAAGAGAAGGAGCTATACAGGGAATTTTTGATGTTTGAAAGGCGTTCAATGACTTGTAAAGTTGAATTTATCAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

451

Amino Acids

52.34

Weight (kDa)

5.92

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 54	9.9e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	91 - 421	6.4e-14	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	109 - 246	1.3e-08	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	370 - 415	1.4e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	569
AccIII	TCCGGA	1 cut(s)	541
AclWI	GGATC	3 cut(s)	552, 616, 908
AcsI	RAATTY	4 cut(s)	530, 561, 1298, 1340
AcuI	CTGAAG	1 cut(s)	458
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	978, 1205
AfiI	CCNNNNNNNGG	5 cut(s)	26, 494, 996, 997, 1164
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	2 cut(s)	141, 1206
AjnI	CCWGG	1 cut(s)	493
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	5 cut(s)	283, 727, 860, 973, 1288
AluI	AGCT	5 cut(s)	283, 727, 860, 973, 1288
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	3 cut(s)	552, 616, 908
AlwNI	CAGNNNCTG	1 cut(s)	1118
Ama87I	CYCGRG	1 cut(s)	21
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	1 cut(s)	787
ApeKI	GCWGC	5 cut(s)	576, 749, 860, 1015, 1149
ApoI	RAATTY	4 cut(s)	530, 561, 1298, 1340
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AseI	ATTAAT	1 cut(s)	714
AspLEI	GCGC	2 cut(s)	652, 865
AspS9I	GGNCC	3 cut(s)	111, 206, 468
AsuHPI	GGTGA	3 cut(s)	1020, 1147, 1196
AsuII	TTCGAA	1 cut(s)	1072
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	3 cut(s)	111, 206, 468
BarI	GAAGNNNNNNTAC	2 cut(s)	1274, 1306
BbvCI	CCTCAGC	1 cut(s)	1145
BbvI	GCAGC	5 cut(s)	563, 761, 847, 1002, 1161
BccI	CCATC	3 cut(s)	126, 686, 1183
BceAI	ACGGC	2 cut(s)	329, 802
BciT130I	CCWGG	1 cut(s)	495
BciVI	GTATCC	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	3 cut(s)	164, 791, 1007
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	5 cut(s)	577, 750, 861, 1016, 1150
BlsI	GCNGC	5 cut(s)	578, 751, 862, 1017, 1151
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	3 cut(s)	111, 206, 468
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	111, 206, 468
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	2 cut(s)	49, 1161
BmuI	ACTGGG	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	1145
Bpu14I	TTCGAA	1 cut(s)	1072
BpuEI	CTTGAG	1 cut(s)	944
BsaBI	GATNNNNATC	1 cut(s)	1241
BsaJI	CCNNGG	1 cut(s)	494
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 494, 996, 997, 1164
Bse1I	ACTGG	2 cut(s)	801, 1001
Bse3DI	GCAATG	1 cut(s)	1091
Bse8I	GATNNNNATC	1 cut(s)	1241
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	937, 1198
BseJI	GATNNNNATC	1 cut(s)	1241
BseLI	CCNNNNNNNGG	5 cut(s)	26, 494, 996, 997, 1164
BseMI	GCAATG	1 cut(s)	1091
BseMII	CTCAG	1 cut(s)	1159
BseNI	ACTGG	2 cut(s)	801, 1001
BseRI	GAGGAG	2 cut(s)	474, 477
BseXI	GCAGC	5 cut(s)	563, 761, 847, 1002, 1161
BshFI	GGCC	1 cut(s)	789
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	3 cut(s)	182, 192, 563
BslI	CCNNNNNNNGG	5 cut(s)	26, 494, 996, 997, 1164
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	3 cut(s)	182, 192, 563
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	1072
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	1 cut(s)	1158
BspEI	TCCGGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	3 cut(s)	552, 616, 908
BspT104I	TTCGAA	1 cut(s)	1072
BspTI	CTTAAG	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	1091
BsrI	ACTGG	2 cut(s)	801, 1001
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	5 cut(s)	260, 840, 854, 1203, 1220
Bst6I	CTCTTC	4 cut(s)	159, 387, 495, 585
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	1093
BstBI	TTCGAA	1 cut(s)	1072
BstDEI	CTNAG	3 cut(s)	464, 1051, 1145
BstENI	CCTNNNNNAGG	2 cut(s)	24, 492
BstF5I	GGATG	2 cut(s)	937, 1198
BstHHI	GCGC	2 cut(s)	652, 865
BstKTI	GATC	6 cut(s)	244, 373, 547, 611, 688, 916
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
BstMWI	GCNNNNNNNGC	1 cut(s)	1093
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	1 cut(s)	1210
BstSCI	CCNGG	1 cut(s)	493
BstV1I	GCAGC	5 cut(s)	563, 761, 847, 1002, 1161
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	789
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	937, 1198
BtsI	GCAGTG	2 cut(s)	795, 1010
BtsIMutI	CAGTG	5 cut(s)	554, 795, 808, 1010, 1248
CaiI	CAGNNNCTG	1 cut(s)	1118
CfoI	GCGC	2 cut(s)	652, 865
Cfr13I	GGNCC	3 cut(s)	111, 206, 468
Csp6I	GTAC	2 cut(s)	977, 1204
CviAII	CATG	5 cut(s)	424, 524, 683, 1207, 1223
CviQI	GTAC	2 cut(s)	977, 1204
DdeI	CTNAG	3 cut(s)	464, 1051, 1145
DpnI	GATC	6 cut(s)	243, 372, 546, 610, 687, 915
DpnII	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
DraI	TTTAAA	1 cut(s)	448
DraIII	CACNNNGTG	1 cut(s)	101
Eam1104I	CTCTTC	4 cut(s)	159, 387, 495, 585
EarI	CTCTTC	4 cut(s)	159, 387, 495, 585
Eco32I	GATATC	2 cut(s)	637, 742
Eco47I	GGWCC	3 cut(s)	111, 206, 468
Eco57I	CTGAAG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	21
EcoNI	CCTNNNNNAGG	2 cut(s)	24, 492
EcoRII	CCWGG	1 cut(s)	493
EcoRV	GATATC	2 cut(s)	637, 742
FaeI	CATG	5 cut(s)	427, 527, 686, 1210, 1226
FaqI	GGGAC	3 cut(s)	182, 192, 563
FatI	CATG	5 cut(s)	423, 523, 682, 1206, 1222
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	5 cut(s)	577, 750, 861, 1016, 1150
FokI	GGATG	2 cut(s)	924, 1205
Fsp4HI	GCNGC	5 cut(s)	577, 750, 861, 1016, 1150
FspBI	CTAG	3 cut(s)	164, 791, 1007
GlaI	GCGC	2 cut(s)	651, 864
GluI	GCNGC	5 cut(s)	577, 750, 861, 1016, 1150
HaeIII	GGCC	1 cut(s)	789
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	652, 865
Hin1II	CATG	5 cut(s)	427, 527, 686, 1210, 1226
Hin6I	GCGC	2 cut(s)	650, 863
HinP1I	GCGC	2 cut(s)	650, 863
HindIII	AAGCTT	2 cut(s)	281, 725
HinfI	GANTC	5 cut(s)	185, 263, 551, 986, 1115
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	3 cut(s)	1020, 1147, 1196
Hpy166II	GTNNAC	2 cut(s)	147, 570
Hpy188I	TCNGA	2 cut(s)	271, 438
Hpy8I	GTNNAC	2 cut(s)	147, 570
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	433, 1276
HpyCH4III	ACNGT	5 cut(s)	260, 840, 854, 1203, 1220
HpyCH4IV	ACGT	4 cut(s)	141, 177, 233, 642
HpyCH4V	TGCA	6 cut(s)	50, 62, 339, 429, 682, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1093
HpyF3I	CTNAG	3 cut(s)	464, 1051, 1145
HpySE526I	ACGT	4 cut(s)	141, 177, 233, 642
Hsp92II	CATG	5 cut(s)	427, 527, 686, 1210, 1226
HspAI	GCGC	2 cut(s)	650, 863
Kpn2I	TCCGGA	1 cut(s)	541
Kzo9I	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
LmnI	GCTCC	2 cut(s)	1105, 1285
Lsp1109I	GCAGC	5 cut(s)	563, 761, 847, 1002, 1161
LweI	GCATC	2 cut(s)	49, 1161
MaeI	CTAG	3 cut(s)	164, 791, 1007
MaeII	ACGT	4 cut(s)	141, 177, 233, 642
MaeIII	GTNAC	2 cut(s)	793, 870
MalI	GATC	6 cut(s)	243, 372, 546, 610, 687, 915
MboI	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
MboII	GAAGA	7 cut(s)	146, 404, 482, 602, 673, 836, 839
MfeI	CAATTG	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	545, 1124
MroI	TCCGGA	1 cut(s)	541
MseI	TTAA	7 cut(s)	276, 291, 447, 474, 513, 714, 1211
MslI	CAYNNNNRTG	1 cut(s)	1182
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	1093
NdeII	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
NlaIII	CATG	5 cut(s)	427, 527, 686, 1210, 1226
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	793, 870
NspI	RCATGY	1 cut(s)	1210
NspV	TTCGAA	1 cut(s)	1072
PaeR7I	CTCGAG	1 cut(s)	21
PciI	ACATGT	1 cut(s)	1206
PctI	GAATGC	1 cut(s)	1087
PfeI	GAWTC	3 cut(s)	185, 263, 986
PkrI	GCNGC	5 cut(s)	578, 751, 862, 1017, 1151
PleI	GAGTC	2 cut(s)	545, 1123
PpsI	GAGTC	2 cut(s)	545, 1123
PscI	ACATGT	1 cut(s)	1206
PshBI	ATTAAT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	111, 206, 468
PspXI	VCTCGAGB	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	1118
RsaI	GTAC	2 cut(s)	978, 1205
RsaNI	GTAC	2 cut(s)	977, 1204
RseI	CAYNNNNRTG	1 cut(s)	1182
SaqAI	TTAA	7 cut(s)	276, 291, 447, 474, 513, 714, 1211
SatI	GCNGC	5 cut(s)	577, 750, 861, 1016, 1150
Sau3AI	GATC	6 cut(s)	241, 370, 544, 608, 685, 913
Sau96I	GGNCC	3 cut(s)	111, 206, 468
SchI	GAGTC	2 cut(s)	545, 1124
ScrFI	CCNGG	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	49, 1161
Sfr274I	CTCGAG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	1072
SinI	GGWCC	3 cut(s)	111, 206, 468
SlaI	CTCGAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	1182
SmlI	CTYRAG	3 cut(s)	21, 512, 923
SmoI	CTYRAG	3 cut(s)	21, 512, 923
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	3 cut(s)	164, 791, 1007
StyD4I	CCNGG	1 cut(s)	493
TaaI	ACNGT	5 cut(s)	260, 840, 854, 1203, 1220
TaiI	ACGT	4 cut(s)	144, 180, 236, 645
TaqI	TCGA	3 cut(s)	22, 744, 1072
TatI	WGTACW	1 cut(s)	1203
TfiI	GAWTC	3 cut(s)	185, 263, 986
Tru1I	TTAA	7 cut(s)	276, 291, 447, 474, 513, 714, 1211
Tru9I	TTAA	7 cut(s)	276, 291, 447, 474, 513, 714, 1211
TscAI	CASTG	5 cut(s)	561, 802, 808, 1017, 1255
TseFI	GTSAC	2 cut(s)	793, 870
TseI	GCWGC	5 cut(s)	576, 749, 860, 1015, 1149
Tsp45I	GTSAC	2 cut(s)	793, 870
TspDTI	ATGAA	5 cut(s)	177, 255, 412, 983, 1080
TspRI	CASTG	5 cut(s)	561, 802, 808, 1017, 1255
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	3 cut(s)	111, 206, 468
VspI	ATTAAT	1 cut(s)	714
XagI	CCTNNNNNAGG	2 cut(s)	24, 492
XapI	RAATTY	4 cut(s)	530, 561, 1298, 1340
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	1210
XhoI	CTCGAG	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	569
XspI	CTAG	3 cut(s)	164, 791, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.