Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

14819613 .. 14822106

Gene Structure 2494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G231300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCGACGTCGGTCGATTCTCCAAAGCCTGACACAGACACTGACACAGAGCTGGATACCAATCCCAACCTCAACCCTAACCCTAATTCTTCGAACTCGTTAGTCCCCGCCTCCTCCAATGGCCCTGCTGTCTGCCTTCTCAGGTTCGCCGGAGACTCCGCTGGCGGGGCGTTCATGGGCTCCGTTTTTGGCTACGGTGCGGGGTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCAGGATCCTATGCTAAGACATTTGCAGTTTTGTCTGGAGTGCACAGCTTGGTTGTCTGCATTTTGAAGAGGCTGCGAGGAAAGGATGATGTTATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTTAGTTTTCCAGGTGCACCCCAGGCTCTTCTACAAAGCTGCCTCACTTTTGGAGCATTCTCATTTATTATTGAAGGCCTAAATAAGCAGCAGCCAGCTTTGGCACATCCACTTTCTGTGAGGAAGAAAAGTGAGCAACTTCCTCCCTTGGTGCTCCCTCTTCAACTTTCACTTCCAGGTGAACTAAAAGCGGGTTTCACCTCATTTTGCAATTCCTTGAAGAATCACAAGGGCACTTCTCACACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

209

Amino Acids

21.47

Weight (kDa)

8.93

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	11
AciI	CCGC	5 cut(s)	108, 159, 165, 200, 566
AclWI	GGATC	4 cut(s)	225, 238, 243, 256
AcyI	GRCGYC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	310, 449, 539, 595
AjnI	CCWGG	3 cut(s)	385, 396, 550
AluBI	AGCT	5 cut(s)	52, 291, 353, 414, 473
AluI	AGCT	5 cut(s)	52, 291, 353, 414, 473
Alw21I	GWGCWC	3 cut(s)	288, 394, 531
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	2 cut(s)	284, 390
AlwI	GGATC	4 cut(s)	225, 238, 243, 256
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	121, 451
ApaLI	GTGCAC	2 cut(s)	284, 390
ApeKI	GCWGC	4 cut(s)	316, 414, 463, 466
AseI	ATTAAT	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	565, 566
AsuII	TTCGAA	1 cut(s)	92
BaeGI	GKGCMC	3 cut(s)	288, 394, 611
BamHI	GGATCC	2 cut(s)	230, 248
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	3 cut(s)	288, 394, 531
BbvI	GCAGC	4 cut(s)	303, 401, 475, 478
BciT130I	CCWGG	3 cut(s)	387, 398, 552
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	4 cut(s)	317, 415, 464, 467
BlsI	GCNGC	4 cut(s)	318, 416, 465, 468
Bme1390I	CCNGG	3 cut(s)	387, 398, 552
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	181, 232, 250
BmrFI	CCNGG	3 cut(s)	387, 398, 552
BoxI	GACNNNNGTC	1 cut(s)	11
BpmI	CTGGAG	2 cut(s)	300, 366
Bpu14I	TTCGAA	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	396, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	387, 398, 552
BseDI	CCNNGG	2 cut(s)	396, 522
BseGI	GGATG	3 cut(s)	334, 362, 481
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	3 cut(s)	288, 394, 611
BseXI	GCAGC	4 cut(s)	303, 401, 475, 478
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	123, 453
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	3 cut(s)	288, 394, 531
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	123, 453
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	5 cut(s)	182, 288, 394, 531, 611
Bsp143I	GATC	2 cut(s)	230, 248
BspACI	CCGC	5 cut(s)	108, 159, 165, 200, 566
BspANI	GGCC	2 cut(s)	123, 453
BspCNI	CTCAG	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	181, 232, 250
BspPI	GGATC	4 cut(s)	225, 238, 243, 256
BspQI	GCTCTTC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	396, 522
BssMI	GATC	2 cut(s)	230, 248
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	3 cut(s)	387, 398, 552
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	3 cut(s)	305, 408, 540
BstACI	GRCGYC	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	163, 471
BstDEI	CTNAG	3 cut(s)	140, 258, 377
BstF5I	GGATG	3 cut(s)	334, 362, 481
BstKTI	GATC	2 cut(s)	233, 251
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	230, 248
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 350, 398
BstNI	CCWGG	3 cut(s)	387, 398, 552
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	385, 396, 550
BstSLI	GKGCMC	3 cut(s)	288, 394, 611
BstV1I	GCAGC	4 cut(s)	303, 401, 475, 478
BstX2I	RGATCY	2 cut(s)	230, 248
BstYI	RGATCY	2 cut(s)	230, 248
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	123, 453
BtsCI	GGATG	3 cut(s)	334, 362, 481
BtsIMutI	CAGTG	2 cut(s)	39, 363
Cac8I	GCNNGC	2 cut(s)	163, 471
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	140, 258, 377
DpnI	GATC	2 cut(s)	232, 250
DpnII	GATC	2 cut(s)	230, 248
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	3 cut(s)	305, 408, 540
EarI	CTCTTC	3 cut(s)	305, 408, 540
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	182
EcoRII	CCWGG	3 cut(s)	385, 396, 550
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	176, 255
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	174
FauI	CCCGC	4 cut(s)	115, 158, 193, 559
Fnu4HI	GCNGC	4 cut(s)	317, 415, 464, 467
FokI	GGATG	3 cut(s)	341, 369, 468
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	4 cut(s)	317, 415, 464, 467
GluI	GCNGC	4 cut(s)	317, 415, 464, 467
GsuI	CTGGAG	2 cut(s)	300, 366
HaeIII	GGCC	2 cut(s)	123, 453
HapII	CCGG	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	3 cut(s)	17, 155, 598
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	565, 566
Hpy166II	GTNNAC	3 cut(s)	286, 392, 557
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	3 cut(s)	286, 392, 557
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	146, 443
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	7 cut(s)	239, 269, 286, 303, 363, 392, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 350, 398
HpyF3I	CTNAG	3 cut(s)	140, 258, 377
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	230, 248
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	185, 428, 534
Lsp1109I	GCAGC	4 cut(s)	303, 401, 475, 478
MaeII	ACGT	1 cut(s)	8
MalI	GATC	2 cut(s)	232, 250
MboI	GATC	2 cut(s)	230, 248
MboII	GAAGA	6 cut(s)	81, 322, 395, 511, 527, 607
MflI	RGATCY	2 cut(s)	230, 248
MhlI	GDGCHC	5 cut(s)	182, 288, 394, 531, 611
MluCI	AATT	2 cut(s)	85, 586
MlyI	GAGTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	210, 225, 339
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	387, 398, 552
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	3 cut(s)	387, 398, 552
MwoI	GCNNNNNNNGC	3 cut(s)	167, 350, 398
NdeII	GATC	2 cut(s)	230, 248
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	181, 232, 250
NspV	TTCGAA	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	408
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	17, 598
PkrI	GCNGC	4 cut(s)	318, 416, 465, 468
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	385, 396, 550
PspGI	CCWGG	3 cut(s)	385, 396, 550
PspN4I	GGNNCC	3 cut(s)	181, 232, 250
PspPI	GGNCC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	230, 248
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	210, 225, 339
SatI	GCNGC	4 cut(s)	317, 415, 464, 467
Sau3AI	GATC	2 cut(s)	230, 248
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	387, 398, 552
SduI	GDGCHC	5 cut(s)	182, 288, 394, 531, 611
SfuI	TTCGAA	1 cut(s)	92
Sse9I	AATT	2 cut(s)	85, 586
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	5 cut(s)	108, 159, 165, 200, 566
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	385, 396, 550
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	15, 92
TasI	AATT	2 cut(s)	85, 586
TfiI	GAWTC	2 cut(s)	17, 598
Tru1I	TTAA	3 cut(s)	210, 225, 339
Tru9I	TTAA	3 cut(s)	210, 225, 339
TscAI	CASTG	2 cut(s)	46, 370
TseI	GCWGC	4 cut(s)	316, 414, 463, 466
TspDTI	ATGAA	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	2 cut(s)	46, 370
VneI	GTGCAC	2 cut(s)	284, 390
VspI	ATTAAT	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.