Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Forward (+)

15619659 .. 15621690

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCGACGACGTCGGTTGATTCTCCAAACACTGAGATGGACACCAACACTGAGCTCGATACCAATCCAAACCCTAATTCTTCGAACTCGTTAGTGCCTGCCTCCCCCAATGCCCCTGCTGTCTGCCTCCTCAAGTTCGCCGGAGACTCTGCTGGCGGCGCGTTCATGGGCTCCGTTTTTGGCTATGGTGCGGGGTTGGTCAAGAAAAAAGGCTTTAAAGGATCCTTTGGAGAGGCAGGATCTTATGCTAAGACATTTGCAGTTTTGTCCGGAGTGCACAGTTTGGTTGTCTGCATTTTGAAGAGGCTGCGAGGAAAGGATGATGTTATTAATGCTGGAGTAGCTGGCTGTTGCACTGGTCTTGCTCTTAGTTTTCCAGGTGCACCACAGGCTCTTCTACAAAGCTGTCTCACTTTTGGGGCATTCTCATTTGTTATTGAAGGCCTAAACAAGCAGCAGCCAGCTTTAGCGCAACCATTTTCTGTGAGGAAGAAAAGTGAGCAAGTCTCTCGCTTGGTACTCCCCCTTCAACTTTCACTTCCGGGCGAACTAAAAGCAGGTTTCACTTCCTTTTGCATTTCCTTGAAGAATCGCAAGAAGGGCAGTTCTCACACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

207

Amino Acids

21.34

Weight (kDa)

9.32

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	47 - 143	1.7e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	2 cut(s)	156, 191
AclWI	GGATC	3 cut(s)	216, 229, 247
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	519
AgsI	TTSAA	4 cut(s)	301, 440, 530, 586
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	4 cut(s)	55, 344, 405, 464
AluI	AGCT	4 cut(s)	55, 344, 405, 464
Alw21I	GWGCWC	3 cut(s)	57, 279, 385
Alw26I	GTCTC	3 cut(s)	138, 413, 511
Alw44I	GTGCAC	2 cut(s)	275, 381
AlwI	GGATC	3 cut(s)	216, 229, 247
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	442
ApaLI	GTGCAC	2 cut(s)	275, 381
ApeKI	GCWGC	3 cut(s)	307, 454, 457
AseI	ATTAAT	1 cut(s)	330
AspLEI	GCGC	2 cut(s)	161, 472
AsuC2I	CCSGG	1 cut(s)	543
AsuII	TTCGAA	1 cut(s)	83
BaeGI	GKGCMC	2 cut(s)	279, 385
BamHI	GGATCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	57, 173
BarI	GAAGNNNNNNTAC	2 cut(s)	510, 542
Bbv12I	GWGCWC	3 cut(s)	57, 279, 385
BbvI	GCAGC	3 cut(s)	294, 466, 469
BccI	CCATC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	3 cut(s)	138, 413, 511
BfuAI	ACCTGC	1 cut(s)	548
BisI	GCNGC	4 cut(s)	157, 308, 455, 458
BlsI	GCNGC	4 cut(s)	158, 309, 456, 459
Bme1390I	CCNGG	2 cut(s)	378, 543
BmiI	GGNNCC	2 cut(s)	172, 223
BmrFI	CCNGG	2 cut(s)	378, 543
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	325
BseJI	GATNNNNATC	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	24, 42
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	279, 385
BseXI	GCAGC	3 cut(s)	294, 466, 469
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	444
BsiHKAI	GWGCWC	3 cut(s)	57, 279, 385
BsiSI	CCGG	3 cut(s)	141, 270, 542
BsmAI	GTCTC	3 cut(s)	138, 413, 511
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	4 cut(s)	57, 173, 279, 385
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	221, 239
BspACI	CCGC	2 cut(s)	156, 191
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	2 cut(s)	25, 43
BspEI	TCCGGA	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	172, 223
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	3 cut(s)	216, 229, 247
BspQI	GCTCTTC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	221, 239
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	296, 399
BstACI	GRCGYC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	4 cut(s)	99, 154, 346, 462
BstDEI	CTNAG	4 cut(s)	33, 51, 249, 368
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	161, 472
BstKTI	GATC	2 cut(s)	224, 242
BstMAI	GTCTC	3 cut(s)	138, 413, 511
BstMBI	GATC	2 cut(s)	221, 239
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 341, 389, 600
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	376, 541
BstSLI	GKGCMC	2 cut(s)	279, 385
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	294, 466, 469
BstX2I	RGATCY	2 cut(s)	221, 239
BstYI	RGATCY	2 cut(s)	221, 239
BsuRI	GGCC	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	3 cut(s)	30, 48, 354
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	4 cut(s)	99, 154, 346, 462
CfoI	GCGC	2 cut(s)	161, 472
Csp6I	GTAC	1 cut(s)	518
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	4 cut(s)	33, 51, 249, 368
DpnI	GATC	2 cut(s)	223, 241
DpnII	GATC	2 cut(s)	221, 239
DraI	TTTAAA	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	296, 399
EarI	CTCTTC	2 cut(s)	296, 399
Ecl136II	GAGCTC	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	2 cut(s)	57, 173
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	57, 173
FaeI	CATG	1 cut(s)	169
FaiI	YATR	3 cut(s)	167, 186, 246
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	157, 308, 455, 458
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	2 cut(s)	57, 173
Fsp4HI	GCNGC	4 cut(s)	157, 308, 455, 458
GlaI	GCGC	2 cut(s)	160, 471
GluI	GCNGC	4 cut(s)	157, 308, 455, 458
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	3 cut(s)	141, 270, 542
HhaI	GCGC	2 cut(s)	161, 472
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	2 cut(s)	159, 470
HinP1I	GCGC	2 cut(s)	159, 470
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	20, 146, 589
HpaII	CCGG	3 cut(s)	141, 270, 542
Hpy166II	GTNNAC	3 cut(s)	6, 277, 383
Hpy188III	TCNNGA	2 cut(s)	202, 270
Hpy8I	GTNNAC	3 cut(s)	6, 277, 383
Hpy99I	CGWCG	3 cut(s)	10, 13, 16
HpyAV	CCTTC	3 cut(s)	434, 536, 592
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	6 cut(s)	260, 277, 294, 354, 383, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 341, 389, 600
HpyF3I	CTNAG	4 cut(s)	33, 51, 249, 368
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	2 cut(s)	159, 470
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	221, 239
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	3 cut(s)	294, 466, 469
MaeII	ACGT	1 cut(s)	11
MalI	GATC	2 cut(s)	223, 241
MboI	GATC	2 cut(s)	221, 239
MboII	GAAGA	5 cut(s)	72, 313, 386, 502, 598
MflI	RGATCY	2 cut(s)	221, 239
MhlI	GDGCHC	4 cut(s)	57, 173, 279, 385
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	112, 137, 140, 226, 297, 305, 480
MroI	TCCGGA	1 cut(s)	269
MseI	TTAA	2 cut(s)	216, 330
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	3 cut(s)	141, 270, 542
MspR9I	CCNGG	2 cut(s)	378, 543
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	4 cut(s)	158, 341, 389, 600
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	221, 239
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	172, 223
NspV	TTCGAA	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	20, 589
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	158, 309, 456, 459
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	172, 223
PsuI	RGATCY	2 cut(s)	221, 239
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	216, 330
SatI	GCNGC	4 cut(s)	157, 308, 455, 458
Sau3AI	GATC	2 cut(s)	221, 239
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	378, 543
SduI	GDGCHC	4 cut(s)	57, 173, 279, 385
SetI	ASST	7 cut(s)	14, 57, 346, 382, 407, 466, 562
SfuI	TTCGAA	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	76
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	2 cut(s)	156, 191
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	376, 541
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	5, 57, 83
TasI	AATT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	20, 589
Tru1I	TTAA	2 cut(s)	216, 330
Tru9I	TTAA	2 cut(s)	216, 330
TscAI	CASTG	3 cut(s)	37, 55, 361
TseI	GCWGC	3 cut(s)	307, 454, 457
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	3 cut(s)	37, 55, 361
Tth111I	GACNNNGTC	1 cut(s)	10
VneI	GTGCAC	2 cut(s)	275, 381
VspI	ATTAAT	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	5
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.