Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Forward (+)

26240470 .. 26241644

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1122600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCGTGTTCACGTGCAGGGTTGTTGAAGAAAATTGGTTTTAAAGGATCCTTTGCAGATGCAGGATCTTCTGCTAAGACATTTGCAGTTTTGTCCGGAGTGCACTGTTTGGTTGTCTGCATGTTGAAGAGGCTGCGAGGAAAGGATGATGCTGGATGTTGCATTGGTCTTGCTCTTAGTTTTCCAGGTGCACCCCAGGCTCTTCTACAAAGCTGTCTCAATTTTGGGGCATTCTCATTTGTTATTGAAGGCCTATACAAGCAGCAGCTGGCTTTAGCACAACCATTTTCTATGAGGAAGAAAAGTGAGCGAGTTCGTCCCTTGGTTCTCCCCCTTCAACTTTCACTCCCAGGAGAACTAAAAGCGGGTTTCACCTTCTTTTGCATTTCCTTTAAGAATCTCAAGAAGGGCACTTCTCACCTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

143

Amino Acids

15.2

Weight (kDa)

9.85

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	13 - 79	8.2e-08	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	3 cut(s)	42, 55, 73
AcvI	CACGTG	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	28, 127, 248, 338
AjnI	CCWGG	3 cut(s)	184, 195, 349
AluBI	AGCT	2 cut(s)	213, 268
AluI	AGCT	2 cut(s)	213, 268
Alw21I	GWGCWC	2 cut(s)	105, 193
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	2 cut(s)	101, 189
AlwI	GGATC	3 cut(s)	42, 55, 73
AlwNI	CAGNNNCTG	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	1 cut(s)	250
ApaLI	GTGCAC	2 cut(s)	101, 189
ApeKI	GCWGC	3 cut(s)	133, 262, 265
AsuHPI	GGTGA	2 cut(s)	364, 410
BaeGI	GKGCMC	3 cut(s)	105, 193, 413
BamHI	GGATCC	1 cut(s)	47
BbrPI	CACGTG	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	105, 193
BbvI	GCAGC	3 cut(s)	120, 274, 277
BciT130I	CCWGG	3 cut(s)	186, 197, 351
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	422
BisI	GCNGC	3 cut(s)	134, 263, 266
BlsI	GCNGC	3 cut(s)	135, 264, 267
Bme1390I	CCNGG	3 cut(s)	186, 197, 351
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	186, 197, 351
BmsI	GCATC	2 cut(s)	49, 139
BpuEI	CTTGAG	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	195, 321, 349
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	3 cut(s)	186, 197, 351
BseDI	CCNNGG	3 cut(s)	195, 321, 349
BseGI	GGATG	2 cut(s)	151, 161
BseSI	GKGCMC	3 cut(s)	105, 193, 413
BseXI	GCAGC	3 cut(s)	120, 274, 277
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	2 cut(s)	105, 193
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	105, 193, 413
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	47, 65
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	3 cut(s)	42, 55, 73
BspQI	GCTCTTC	1 cut(s)	207
BssECI	CCNNGG	3 cut(s)	195, 321, 349
BssMI	GATC	2 cut(s)	47, 65
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	3 cut(s)	186, 197, 351
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	122, 207
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	75, 176
BstF5I	GGATG	2 cut(s)	151, 161
BstKTI	GATC	2 cut(s)	50, 68
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	47, 65
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	3 cut(s)	186, 197, 351
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	184, 195, 349
BstSLI	GKGCMC	3 cut(s)	105, 193, 413
BstV1I	GCAGC	3 cut(s)	120, 274, 277
BstX2I	RGATCY	2 cut(s)	47, 65
BstYI	RGATCY	2 cut(s)	47, 65
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	151, 161
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	268
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	7 cut(s)	133, 200, 213, 252, 268, 272, 425
CviKI_1	RGCY	7 cut(s)	133, 200, 213, 252, 268, 272, 425
DdeI	CTNAG	2 cut(s)	75, 176
DpnI	GATC	2 cut(s)	49, 67
DpnII	GATC	2 cut(s)	47, 65
DraI	TTTAAA	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	122, 207
EarI	CTCTTC	2 cut(s)	122, 207
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	252
Eco72I	CACGTG	1 cut(s)	14
EcoRII	CCWGG	3 cut(s)	184, 195, 349
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	122, 256, 293
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	134, 263, 266
FokI	GGATG	2 cut(s)	158, 168
Fsp4HI	GCNGC	3 cut(s)	134, 263, 266
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	3 cut(s)	134, 263, 266
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	2 cut(s)	364, 410
Hpy166II	GTNNAC	3 cut(s)	11, 103, 191
Hpy188III	TCNNGA	2 cut(s)	96, 403
Hpy8I	GTNNAC	3 cut(s)	11, 103, 191
HpyAV	CCTTC	4 cut(s)	242, 344, 385, 400
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	9 cut(s)	17, 56, 62, 86, 103, 120, 162, 191, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	75, 176
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	124
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	47, 65
LguI	GCTCTTC	1 cut(s)	207
Lsp1109I	GCAGC	3 cut(s)	120, 274, 277
LweI	GCATC	2 cut(s)	49, 139
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	13
MalI	GATC	2 cut(s)	49, 67
MboI	GATC	2 cut(s)	47, 65
MboII	GAAGA	5 cut(s)	40, 60, 139, 194, 310
MflI	RGATCY	2 cut(s)	47, 65
MhlI	GDGCHC	3 cut(s)	105, 193, 413
MluCI	AATT	2 cut(s)	33, 220
MnlI	CCTC	3 cut(s)	123, 131, 288
MroI	TCCGGA	1 cut(s)	95
MseI	TTAA	2 cut(s)	42, 393
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	3 cut(s)	186, 197, 351
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	3 cut(s)	186, 197, 351
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	47, 65
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	135, 264, 267
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	3 cut(s)	184, 195, 349
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	3 cut(s)	184, 195, 349
PspN4I	GGNNCC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	47, 65
PvuII	CAGCTG	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	42, 393
SatI	GCNGC	3 cut(s)	134, 263, 266
Sau3AI	GATC	2 cut(s)	47, 65
ScrFI	CCNGG	3 cut(s)	186, 197, 351
SduI	GDGCHC	3 cut(s)	105, 193, 413
SetI	ASST	6 cut(s)	16, 190, 215, 270, 377, 423
SfaNI	GCATC	2 cut(s)	49, 139
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	2 cut(s)	33, 220
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	184, 195, 349
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	16
TasI	AATT	2 cut(s)	33, 220
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	42, 393
Tru9I	TTAA	2 cut(s)	42, 393
TscAI	CASTG	1 cut(s)	110
TseI	GCWGC	3 cut(s)	133, 262, 265
TspRI	CASTG	1 cut(s)	110
VneI	GTGCAC	2 cut(s)	101, 189
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.