Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

22486297 .. 22488015

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGCCGAGAATTCTTCAAACGCTATTAACGTCGATACGAGTCTCGATTCCGATTCAAAACCTAACCGTGACGCTAATGATATGACTGATCATGACTCTTCTTCTAAAGCATTGGTAATCCCTGCTCCCGCCGTTTGTCTTGTACGTTTCGCCGGAGATGCTGCTAGTGGCGCATTCATGGGCTCTGTATTTGGCTATGGCTCTGGATTGTTTAAGAAGAAAGGGTTTAAAGGATCATTTGTGGATGCGGGTCAGTCTGCAAAGACTTTTGCGGTTTTATCTGGAGTACACAGTTTAGTTGTTTGCCTTCTAAAACAAATACGAGGCAAAGATGACGCCATTAATGTTGGAGTTGCTGGGTGTTGTACTGGCCTTGCTCTTAGTTTCCCCGGTGCACCGCAAGCAATGCTACAGAGTTGTCTCACTTTTGGTGCCTTCTCCTTCATCCTTGAAGGACTCAACAAAAGACAAACGGCTTTGGCTCACTCTGTCTCGTTTAGACAACAAACCAGAAGTCCCCAACATGATTTACCGCTGCTCTCGTTGGCTATCCCAATCCATGATGAAATCAAAGGAGCTTTCTCTTCTTTCTGCAACTCCTTAACGAAACCCAAGAAGCTCAAATTTCCTCATGCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

214

Amino Acids

22.52

Weight (kDa)

9.08

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	49 - 148	5.5e-15	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AciI	CCGC	6 cut(s)	5, 132, 251, 275, 401, 536
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	13, 626
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	3 cut(s)	147, 291, 370
AgsI	TTSAA	3 cut(s)	21, 60, 455
AluBI	AGCT	2 cut(s)	581, 622
AluI	AGCT	2 cut(s)	581, 622
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	3 cut(s)	50, 428, 499
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	2 cut(s)	6, 373
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	164, 538
ApoI	RAATTY	2 cut(s)	13, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	502, 534
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	151, 525
BceAI	ACGGC	2 cut(s)	119, 492
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	3 cut(s)	50, 428, 499
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	413
BisI	GCNGC	3 cut(s)	6, 165, 539
BlsI	GCNGC	3 cut(s)	7, 166, 540
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	151, 238
BpmI	CTGGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	253, 447
BseMI	GCAATG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	400
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	151, 525
BseYI	CCCAGC	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	8, 375
BshNI	GGYRCC	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	156, 393
BslFI	GGGAC	1 cut(s)	504
BsmAI	GTCTC	3 cut(s)	50, 428, 499
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	8, 375
Bsp1286I	GDGCHC	2 cut(s)	188, 400
Bsp143I	GATC	2 cut(s)	91, 236
BspACI	CCGC	6 cut(s)	5, 132, 251, 275, 401, 536
BspANI	GGCC	2 cut(s)	8, 375
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	91, 236
BssNI	GRCGYC	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	71, 296
Bst6I	CTCTTC	2 cut(s)	106, 592
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	253, 447
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	94, 239
BstMAI	GTCTC	3 cut(s)	50, 428, 499
BstMBI	GATC	2 cut(s)	91, 236
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 173, 404, 409
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	151, 525
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	8, 375
BtsCI	GGATG	2 cut(s)	253, 447
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	176
CseI	GACGC	2 cut(s)	83, 347
Csp6I	GTAC	3 cut(s)	146, 290, 369
CviAII	CATG	5 cut(s)	95, 181, 527, 563, 635
CviQI	GTAC	3 cut(s)	146, 290, 369
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	93, 238
DpnII	GATC	2 cut(s)	91, 236
DraI	TTTAAA	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	106, 592
EarI	CTCTTC	2 cut(s)	106, 592
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	5 cut(s)	98, 184, 530, 566, 638
FaiI	YATR	7 cut(s)	86, 96, 182, 201, 528, 564, 636
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	5 cut(s)	94, 180, 526, 562, 634
FauI	CCCGC	2 cut(s)	139, 244
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	6, 165, 539
FokI	GGATG	2 cut(s)	260, 434
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	6, 165, 539
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	3 cut(s)	6, 165, 539
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	8, 375
HapII	CCGG	2 cut(s)	156, 393
HgaI	GACGC	2 cut(s)	83, 347
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	98, 184, 530, 566, 638
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	5 cut(s)	43, 50, 56, 98, 459
HpaII	CCGG	2 cut(s)	156, 393
Hpy166II	GTNNAC	2 cut(s)	292, 398
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	4 cut(s)	47, 95, 207, 285
Hpy8I	GTNNAC	2 cut(s)	292, 398
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	320, 448, 449, 454
HpyCH4III	ACNGT	2 cut(s)	71, 296
HpyCH4IV	ACGT	2 cut(s)	33, 148
HpyCH4V	TGCA	3 cut(s)	263, 398, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 173, 404, 409
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	33, 148
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	5 cut(s)	98, 184, 530, 566, 638
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 236
LmnI	GCTCC	2 cut(s)	133, 578
LpnPI	CCDG	8 cut(s)	138, 169, 192, 270, 345, 357, 406, 526
Lsp1109I	GCAGC	2 cut(s)	151, 525
LweI	GCATC	2 cut(s)	151, 238
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	33, 148
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	2 cut(s)	93, 238
MboI	GATC	2 cut(s)	91, 236
MboII	GAAGA	5 cut(s)	9, 93, 96, 232, 579
MhlI	GDGCHC	2 cut(s)	188, 400
MluCI	AATT	2 cut(s)	13, 626
MlyI	GAGTC	3 cut(s)	52, 92, 453
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	2 cut(s)	320, 642
MseI	TTAA	5 cut(s)	30, 216, 231, 345, 605
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	2 cut(s)	156, 393
MspR9I	CCNGG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	161, 173, 404, 409
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	2 cut(s)	91, 236
NlaIII	CATG	5 cut(s)	98, 184, 530, 566, 638
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	50, 56
PkrI	GCNGC	3 cut(s)	7, 166, 540
PleI	GAGTC	3 cut(s)	51, 92, 453
PpsI	GAGTC	3 cut(s)	51, 92, 453
PshBI	ATTAAT	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	436
RsaI	GTAC	3 cut(s)	147, 291, 370
RsaNI	GTAC	3 cut(s)	146, 290, 369
SaqAI	TTAA	5 cut(s)	30, 216, 231, 345, 605
SatI	GCNGC	3 cut(s)	6, 165, 539
Sau3AI	GATC	2 cut(s)	91, 236
SchI	GAGTC	3 cut(s)	52, 92, 453
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	188, 400
SetI	ASST	5 cut(s)	36, 67, 151, 583, 624
SfaNI	GCATC	2 cut(s)	151, 238
SfcI	CTRYAG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	13, 626
SsiI	CCGC	6 cut(s)	5, 132, 251, 275, 401, 536
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	71, 296
TaiI	ACGT	2 cut(s)	36, 151
TaqI	TCGA	2 cut(s)	36, 48
TasI	AATT	2 cut(s)	13, 626
TatI	WGTACW	2 cut(s)	289, 368
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	50, 56
Tru1I	TTAA	5 cut(s)	30, 216, 231, 345, 605
Tru9I	TTAA	5 cut(s)	30, 216, 231, 345, 605
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	164, 538
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	169, 436, 582
VneI	GTGCAC	1 cut(s)	396
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	2 cut(s)	13, 626
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.