Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

36958713 .. 36961025

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCGCCGCGTCGCCGTTGGATCCTCCGAAACCCGACTCCGAAGCCGCCGACACCGACCCCGACCCAAACCCTAACCCTACTAATCCTTCAAACGCGTTATTCCCTGTTTCCCCAAACGGCTCTGCTGTCTGCCTTCTCCGGTTCGCTGGGGACTCCGCCGGCGGCGCATTCATGGGCTCCATCTTTGGCTATGGTGCGGGTTTGGTCAAGAAAAAAGGCTTTAAAGGATCCTTTGGAGAAGCAGGATCTTATGCTAAGACATTTGCAGTTTTGTCTGGAGTGCACAGTTTGGTTGTCTGCATTTTGAAGAGGCTTCGAGGAAAGGATGATGTCATTAATGCAGGAGTAGCTGGATGTTGTACCGGTCTCGCCCTTAGTTTTCCAGGTGCACCCCAGCAACTTCTACAAAGTTGTCTCACTTTTGGGGCCTTTTCATTTATTCTTGAAGGCTTTAATAAGCAGCAGCCAGCTCTGGCACAATCATTTCCTCTGAGAATCAAAAGTGAAGAACGTCCTTCATTGGTGCTCCCTCTTCAACTATCACTTACTGGGGAGCTGAAAGAGGGTTTCACTGCTTTCTGTAACTCCTTGAAAAATCACAAGGGCACTCGCACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

207

Amino Acids

21.49

Weight (kDa)

8.76

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	51 - 146	2.2e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	11, 98
AciI	CCGC	6 cut(s)	6, 9, 48, 159, 165, 200
AclWI	GGATC	5 cut(s)	17, 30, 225, 238, 256
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	96
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	93, 310, 449, 539, 595
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	3 cut(s)	353, 473, 559
AluI	AGCT	3 cut(s)	353, 473, 559
Alw21I	GWGCWC	3 cut(s)	288, 394, 531
Alw26I	GTCTC	2 cut(s)	374, 422
Alw44I	GTGCAC	2 cut(s)	284, 390
AlwI	GGATC	5 cut(s)	17, 30, 225, 238, 256
AoxI	GGCC	2 cut(s)	3, 429
ApaLI	GTGCAC	2 cut(s)	284, 390
ApeKI	GCWGC	2 cut(s)	463, 466
AseI	ATTAAT	1 cut(s)	339
AsiGI	ACCGGT	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	429
BaeGI	GKGCMC	3 cut(s)	288, 394, 611
BamHI	GGATCC	2 cut(s)	22, 230
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	3 cut(s)	288, 394, 531
BbvI	GCAGC	2 cut(s)	475, 478
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	387
BcoDI	GTCTC	2 cut(s)	374, 422
BisI	GCNGC	6 cut(s)	6, 9, 48, 166, 464, 467
BlsI	GCNGC	6 cut(s)	7, 10, 49, 167, 465, 468
Bme1390I	CCNGG	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	4 cut(s)	24, 181, 232, 430
BmrFI	CCNGG	1 cut(s)	387
BmrI	ACTGGG	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	374
BsaWI	WCCGGW	2 cut(s)	141, 365
Bse118I	RCCGGY	2 cut(s)	161, 365
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	334, 362
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	556
BseSI	GKGCMC	3 cut(s)	288, 394, 611
BseXI	GCAGC	2 cut(s)	475, 478
BseYI	CCCAGC	2 cut(s)	149, 396
Bsh1236I	CGCG	2 cut(s)	11, 98
BshFI	GGCC	2 cut(s)	5, 431
BshTI	ACCGGT	1 cut(s)	365
BsiHKAI	GWGCWC	3 cut(s)	288, 394, 531
BsiSI	CCGG	3 cut(s)	142, 162, 366
BslFI	GGGAC	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	374, 422
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	5, 431
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	5 cut(s)	182, 288, 394, 531, 611
Bsp143I	GATC	3 cut(s)	22, 230, 248
BspACI	CCGC	6 cut(s)	6, 9, 48, 159, 165, 200
BspANI	GGCC	2 cut(s)	5, 431
BspCNI	CTCAG	1 cut(s)	486
BspFNI	CGCG	2 cut(s)	11, 98
BspLI	GGNNCC	4 cut(s)	24, 181, 232, 430
BspPI	GGATC	5 cut(s)	17, 30, 225, 238, 256
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	161, 365
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	2 cut(s)	161, 365
BssMI	GATC	3 cut(s)	22, 230, 248
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	2 cut(s)	305, 540
BstC8I	GCNNGC	2 cut(s)	163, 471
BstDEI	CTNAG	3 cut(s)	258, 377, 494
BstF5I	GGATG	2 cut(s)	334, 362
BstFNI	CGCG	2 cut(s)	11, 98
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	25, 233, 251
BstMAI	GTCTC	2 cut(s)	374, 422
BstMBI	GATC	3 cut(s)	22, 230, 248
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 350
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	385
BstSLI	GKGCMC	3 cut(s)	288, 394, 611
BstUI	CGCG	2 cut(s)	11, 98
BstV1I	GCAGC	2 cut(s)	475, 478
BstX2I	RGATCY	3 cut(s)	22, 230, 248
BstYI	RGATCY	3 cut(s)	22, 230, 248
BsuRI	GGCC	2 cut(s)	5, 431
BtsCI	GGATG	2 cut(s)	334, 362
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	163, 471
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	2 cut(s)	161, 365
Cfr13I	GGNCC	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	363
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	3 cut(s)	258, 377, 494
DpnI	GATC	3 cut(s)	24, 232, 250
DpnII	GATC	3 cut(s)	22, 230, 248
DraI	TTTAAA	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	305, 540
EarI	CTCTTC	2 cut(s)	305, 540
EciI	GGCGGA	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	182
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	176, 195, 255
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	6 cut(s)	6, 9, 48, 166, 464, 467
FokI	GGATG	2 cut(s)	341, 369
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	6 cut(s)	6, 9, 48, 166, 464, 467
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	6 cut(s)	6, 9, 48, 166, 464, 467
GsaI	CCCAGC	2 cut(s)	153, 400
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	5, 431
HapII	CCGG	3 cut(s)	142, 162, 366
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	38, 155, 498
HpaII	CCGG	3 cut(s)	142, 162, 366
Hpy166II	GTNNAC	2 cut(s)	286, 392
Hpy188I	TCNGA	3 cut(s)	30, 43, 495
Hpy188III	TCNNGA	3 cut(s)	211, 279, 446
Hpy8I	GTNNAC	2 cut(s)	286, 392
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	99, 146, 443, 528
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	269, 286, 303, 344, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 350
HpyF3I	CTNAG	3 cut(s)	258, 377, 494
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	22, 230, 248
LmnI	GCTCC	3 cut(s)	185, 534, 556
Lsp1109I	GCAGC	2 cut(s)	475, 478
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	3 cut(s)	24, 232, 250
MboI	GATC	3 cut(s)	22, 230, 248
MboII	GAAGA	3 cut(s)	322, 521, 527
MflI	RGATCY	3 cut(s)	22, 230, 248
MhlI	GDGCHC	5 cut(s)	182, 288, 394, 531, 611
MluI	ACGCGT	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	32, 149
MnlI	CCTC	6 cut(s)	36, 306, 314, 501, 543, 559
MreI	CGCCGGCG	1 cut(s)	161
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	3 cut(s)	225, 339, 456
MspI	CCGG	3 cut(s)	142, 162, 366
MspR9I	CCNGG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	387
MvnI	CGCG	2 cut(s)	11, 98
MwoI	GCNNNNNNNGC	2 cut(s)	167, 350
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	3 cut(s)	22, 230, 248
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	4 cut(s)	24, 181, 232, 430
PctI	GAATGC	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	498
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	6 cut(s)	7, 10, 49, 167, 465, 468
PleI	GAGTC	2 cut(s)	32, 149
PpsI	GAGTC	2 cut(s)	32, 149
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	385
PspFI	CCCAGC	2 cut(s)	149, 396
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	4 cut(s)	24, 181, 232, 430
PspPI	GGNCC	1 cut(s)	429
PsuI	RGATCY	3 cut(s)	22, 230, 248
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	225, 339, 456
SatI	GCNGC	6 cut(s)	6, 9, 48, 166, 464, 467
Sau3AI	GATC	3 cut(s)	22, 230, 248
Sau96I	GGNCC	1 cut(s)	429
SchI	GAGTC	2 cut(s)	32, 149
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	5 cut(s)	182, 288, 394, 531, 611
SetI	ASST	5 cut(s)	355, 391, 475, 517, 561
SgrAI	CRCCGGYG	1 cut(s)	161
SsiI	CCGC	6 cut(s)	6, 9, 48, 159, 165, 200
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	319
TauI	GCSGC	4 cut(s)	8, 11, 50, 168
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	3 cut(s)	225, 339, 456
Tru9I	TTAA	3 cut(s)	225, 339, 456
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	2 cut(s)	463, 466
TspDTI	ATGAA	3 cut(s)	163, 426, 510
TspRI	CASTG	1 cut(s)	580
VneI	GTGCAC	2 cut(s)	284, 390
VspI	ATTAAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.