Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Reverse (-)

16999289 .. 17002382

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCCTCCGCGTCGACCTTGGATCCTCCGAATGCCACCGACTCCTCCGAAGCCGACCTAAACCCTAATCCTTCCAACGCCTTATTCCCTGTTTCCCCAAATGCTTCTGCCGTCTGCCTTCTCAGGTTCGCCGGAGACTCCGCCTCCGGCGCCCTCATGGGCTCCATCTTCGGCTACGGTGCCGGTTTGTTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAAGCCGGGTCTCATGCCAAGACATTTGCAGTTTTGTCTGGAGTGCACAGTTTGGTTGTCTGCATTTTGAAGAGGATACGAGGAAAGGATGATGTCATTAATGCAGGAGTAGCTGGATGTTGCACCGGTCTCGCTCTCAGTTTTCCTGGCGCACCCCAGCAACTTCTACAAAGTTGTCTCACTTTTGGGGCCTTCTCATTTATTCTTGACGGCCTCAATAAGCAGCAGCCTGCTCTGGCACAATCATTTCCTCTGAGAGTTAAAAGTGAAGAACATTCTTCATTGGTACTCCCTCTTCAACTATCACTTACTGGGGAACTGAAAGAGGGCTTCACCGCATTCCGCAACTCCTTGAAGAATCACAAGAAGGGTACTCCTCGCATGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

204

Amino Acids

21.16

Weight (kDa)

9.2

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	43 - 140	2e-15	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	149, 179
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 141, 558, 565
AclWI	GGATC	4 cut(s)	17, 30, 207, 220
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	510, 595
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	292, 521, 577
AjnI	CCWGG	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	4 cut(s)	129, 237, 356, 404
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	4 cut(s)	17, 30, 207, 220
AoxI	GGCC	3 cut(s)	3, 411, 433
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	445, 448
AseI	ATTAAT	1 cut(s)	321
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	152, 374
AspS9I	GGNCC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	270
BamHI	GGATCC	2 cut(s)	22, 212
BanI	GGYRCC	2 cut(s)	149, 179
BanII	GRGCYC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	501, 533
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	457, 460
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	95, 448
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	1 cut(s)	369
BciVI	GTATCC	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	4 cut(s)	129, 237, 356, 404
BfoI	RGCGCY	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	291
BisI	GCNGC	2 cut(s)	446, 449
BlsI	GCNGC	2 cut(s)	447, 450
Bme1390I	CCNGG	2 cut(s)	229, 369
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	6 cut(s)	24, 151, 163, 181, 214, 412
BmrFI	CCNGG	2 cut(s)	229, 369
BmrI	ACTGGG	1 cut(s)	543
BmuI	ACTGGG	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	2 cut(s)	237, 356
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse118I	RCCGGY	2 cut(s)	182, 347
Bse1I	ACTGG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	316, 344
BseMII	CTCAG	3 cut(s)	136, 373, 467
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	34, 588
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	457, 460
BseYI	CCCAGC	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	5, 413, 435
BshNI	GGYRCC	2 cut(s)	149, 179
BshTI	ACCGGT	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	5 cut(s)	132, 147, 183, 228, 348
BsmAI	GTCTC	4 cut(s)	129, 237, 356, 404
BsmI	GAATGC	2 cut(s)	37, 560
BsnI	GGCC	3 cut(s)	5, 413, 435
Bso31I	GGTCTC	2 cut(s)	237, 356
Bsp1286I	GDGCHC	2 cut(s)	164, 270
Bsp143I	GATC	2 cut(s)	22, 212
BspACI	CCGC	4 cut(s)	9, 141, 558, 565
BspANI	GGCC	3 cut(s)	5, 413, 435
BspCNI	CTCAG	3 cut(s)	135, 372, 468
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	6 cut(s)	24, 151, 163, 181, 214, 412
BspPI	GGATC	4 cut(s)	17, 30, 207, 220
BspT107I	GGYRCC	2 cut(s)	149, 179
BspTNI	GGTCTC	2 cut(s)	237, 356
BsrFI	RCCGGY	2 cut(s)	182, 347
BsrI	ACTGG	1 cut(s)	538
BssAI	RCCGGY	2 cut(s)	182, 347
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	22, 212
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	179, 272
Bst6I	CTCTTC	2 cut(s)	287, 522
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	122, 359, 476
BstF5I	GGATG	2 cut(s)	316, 344
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 374
BstKTI	GATC	2 cut(s)	25, 215
BstMAI	GTCTC	4 cut(s)	129, 237, 356, 404
BstMBI	GATC	2 cut(s)	22, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 332
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	2 cut(s)	227, 367
BstSLI	GKGCMC	1 cut(s)	270
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	457, 460
BstX2I	RGATCY	2 cut(s)	22, 212
BstYI	RGATCY	2 cut(s)	22, 212
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	5, 413, 435
BtsCI	GGATG	2 cut(s)	316, 344
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	2 cut(s)	152, 374
Cfr10I	RCCGGY	2 cut(s)	182, 347
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	509, 594
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	3 cut(s)	157, 236, 604
CviQI	GTAC	2 cut(s)	509, 594
DdeI	CTNAG	3 cut(s)	122, 359, 476
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	2 cut(s)	24, 214
DpnII	GATC	2 cut(s)	22, 212
DraI	TTTAAA	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	287, 522
EarI	CTCTTC	2 cut(s)	287, 522
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	2 cut(s)	237, 356
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	164
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	3 cut(s)	160, 239, 607
FaiI	YATR	3 cut(s)	158, 237, 605
FatI	CATG	3 cut(s)	156, 235, 603
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	446, 449
FokI	GGATG	2 cut(s)	323, 351
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	446, 449
GlaI	GCGC	2 cut(s)	151, 373
GluI	GCNGC	2 cut(s)	446, 449
GsaI	CCCAGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	5, 413, 435
HapII	CCGG	5 cut(s)	132, 147, 183, 228, 348
HhaI	GCGC	2 cut(s)	152, 374
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	160, 239, 607
Hin6I	GCGC	2 cut(s)	150, 372
HinP1I	GCGC	2 cut(s)	150, 372
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	41, 137, 580
HpaII	CCGG	5 cut(s)	132, 147, 183, 228, 348
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	2 cut(s)	15, 268
Hpy188I	TCNGA	3 cut(s)	30, 49, 477
Hpy188III	TCNNGA	2 cut(s)	261, 428
Hpy8I	GTNNAC	2 cut(s)	15, 268
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	81, 128, 424, 583
HpyCH4III	ACNGT	2 cut(s)	179, 272
HpyCH4V	TGCA	6 cut(s)	221, 251, 268, 285, 326, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 332
HpyF3I	CTNAG	3 cut(s)	122, 359, 476
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	160, 239, 607
HspAI	GCGC	2 cut(s)	150, 372
KasI	GGCGCC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	22, 212
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	2 cut(s)	457, 460
MalI	GATC	2 cut(s)	24, 214
MboI	GATC	2 cut(s)	22, 212
MboII	GAAGA	6 cut(s)	160, 304, 492, 503, 509, 589
MflI	RGATCY	2 cut(s)	22, 212
MhlI	GDGCHC	2 cut(s)	164, 270
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	35, 131
MmeI	TCCRAC	1 cut(s)	99
MseI	TTAA	4 cut(s)	192, 207, 321, 483
MspI	CCGG	5 cut(s)	132, 147, 183, 228, 348
MspR9I	CCNGG	2 cut(s)	229, 369
Mva1269I	GAATGC	2 cut(s)	37, 560
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	149, 332
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	22, 212
NlaIII	CATG	3 cut(s)	160, 239, 607
NlaIV	GGNNCC	6 cut(s)	24, 151, 163, 181, 214, 412
PctI	GAATGC	2 cut(s)	37, 560
PfeI	GAWTC	1 cut(s)	580
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	447, 450
PleI	GAGTC	2 cut(s)	35, 131
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	35, 131
PshBI	ATTAAT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	6 cut(s)	24, 151, 163, 181, 214, 412
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	2 cut(s)	22, 212
RsaI	GTAC	2 cut(s)	510, 595
RsaNI	GTAC	2 cut(s)	509, 594
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	4 cut(s)	192, 207, 321, 483
SatI	GCNGC	2 cut(s)	446, 449
Sau3AI	GATC	2 cut(s)	22, 212
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	2 cut(s)	35, 131
ScrFI	CCNGG	2 cut(s)	229, 369
SduI	GDGCHC	2 cut(s)	164, 270
SetI	ASST	5 cut(s)	20, 60, 128, 337, 611
SfoI	GGCGCC	1 cut(s)	151
SsiI	CCGC	4 cut(s)	9, 141, 558, 565
SspDI	GGCGCC	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	227, 367
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	179, 272
TaqI	TCGA	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	4 cut(s)	192, 207, 321, 483
Tru9I	TTAA	4 cut(s)	192, 207, 321, 483
TseI	GCWGC	2 cut(s)	445, 448
TspDTI	ATGAA	1 cut(s)	492
VneI	GTGCAC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.