Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Forward (+)

2395326 .. 2401028

Gene Structure 5703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1020100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTGGAAGAGGCTGCGAGGAAAGGATTATGCTGGATGTTGCACTGATCTTGCTCTTAGTTTTCCAGGTGCAACCCAGGCTCTTCTACAAAGCTGTCTCACTTTTGGGGCGTTCTCATTTGTTATTGAAGCCCTAAACAAGCAGCAGCCGGCTTTAGCACAACCATTTTCTGTGAGGAAGAAAAGTGAGCAAGTTCGTCCCTTGGTGCTCCCCCTTCAACTTTCACTCACGGGAGAACTAAAAGCGGGTTTCACCTTTTGCAATTCCTTGAAGAATCGCAAGAAGGGCACTTCTCACCCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

102

Amino Acids

11.07

Weight (kDa)

9.9

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	128, 218, 271
AjnI	CCWGG	2 cut(s)	64, 75
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	13, 142, 145
AsuHPI	GGTGA	2 cut(s)	244, 287
BaeGI	GKGCMC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	154, 157
BciT130I	CCWGG	2 cut(s)	66, 77
BcoDI	GTCTC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	14, 143, 146
BlsI	GCNGC	3 cut(s)	15, 144, 147
Bme1390I	CCNGG	2 cut(s)	66, 77
BmrFI	CCNGG	2 cut(s)	66, 77
BsaJI	CCNNGG	2 cut(s)	75, 201
Bse118I	RCCGGY	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	66, 77
BseDI	CCNNGG	2 cut(s)	75, 201
BseGI	GGATG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	154, 157
BseYI	CCCAGC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	210, 290
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	75, 201
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	66, 77
Bst6I	CTCTTC	2 cut(s)	2, 87
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 285
BstNI	CCWGG	2 cut(s)	66, 77
BstSCI	CCNGG	2 cut(s)	64, 75
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	154, 157
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	148
CviJI	RGCY	7 cut(s)	13, 80, 93, 131, 148, 152, 302
CviKI_1	RGCY	7 cut(s)	13, 80, 93, 131, 148, 152, 302
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	2, 87
EarI	CTCTTC	2 cut(s)	2, 87
Eco130I	CCWWGG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	64, 75
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaiI	YATR	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	183
FauI	CCCGC	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	14, 143, 146
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	14, 143, 146
GluI	GCNGC	3 cut(s)	14, 143, 146
GsaI	CCCAGC	1 cut(s)	302
HapII	CCGG	1 cut(s)	149
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	244, 287
HpyAV	CCTTC	2 cut(s)	224, 277
HpyCH4V	TGCA	3 cut(s)	42, 71, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 285
HpyF3I	CTNAG	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	6 cut(s)	18, 51, 62, 78, 89, 162
Lsp1109I	GCAGC	2 cut(s)	154, 157
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	4 cut(s)	19, 74, 190, 283
MhlI	GDGCHC	2 cut(s)	210, 290
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	3 cut(s)	3, 11, 168
MroNI	GCCGGC	1 cut(s)	148
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	66, 77
MvaI	CCWGG	2 cut(s)	66, 77
MwoI	GCNNNNNNNGC	2 cut(s)	77, 285
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	1 cut(s)	46
NgoMIV	GCCGGC	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	15, 144, 147
Psp6I	CCWGG	2 cut(s)	64, 75
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	2 cut(s)	64, 75
SapI	GCTCTTC	1 cut(s)	87
SatI	GCNGC	3 cut(s)	14, 143, 146
Sau3AI	GATC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	66, 77
SduI	GDGCHC	2 cut(s)	210, 290
SetI	ASST	3 cut(s)	70, 95, 257
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	64, 75
StyI	CCWWGG	1 cut(s)	201
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	3 cut(s)	13, 142, 145
TspRI	CASTG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.