Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Forward (+)

13734922 .. 13736518

Gene Structure 1597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAGGGAACTTCTTCATCAGGTCTGATGCTCAACGAGCACATGACAATGGCTTCATAGCCAAACAAAAACCTAATCTCACCACGGCTCCAACAGCAGGTCAAGCTAATGAAAGTGGCTGTTTTGACTGCAACATCTGTTTAGACACAGCCCATGATCCGGTGGTCACTCTCTGCGGGCACCTTTTCTGCTGGCCTTGCATTTACAAGTGGTTACATGTTCAGTTATCTTCTGTCTCCGTTGATCAGCACCAGAACAATTGCCCTGTTTGTAAATCCAACATTACTATCACCTCTTTGGTTCCTCTCTATGGAAGAGGCATGTCTTCGCCTTCTTCCACGTTTGGCTCCAAGAAACAAGACGCACTGTCCACTGACATACCCCGCAGACCTGCTCCATCAGCCTTACGCAATCCGATTACCTCAGCATCATCTCTGAACCCAAGCTTGCAACATCAAACTCTGTCTCCTTCATTTCATAATCATCAGTATTCCCCTCGTGGCTTCACCACAACCGAATCAACCGACCTTGCCAATGCTGTAATGATGAGTTTCCTCTACCCTGTGATTGGAATGTTTGGAGACCTGGTCTACACCAGGATATTCGGGACCTTCACAAACACAATAGCTCAGCCTTACCAAAGCCAGAGGATGATGCAGCGTGAGAAGTCTCTTAATCGGGTATCGATATTCTTCCTTTGTTGCATCATCCTTTGCCTCCTTCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

243

Amino Acids

26.98

Weight (kDa)

8.5

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	43 - 92	3.4e-06	Ring finger domain
zf-RING_5	PF14634	43 - 92	5.8e-06	zinc-RING finger domain
zf-C3HC4	PF00097	44 - 91	8.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	44 - 74	5.9e-09	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	44 - 96	5.4e-08	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4_2	PF13923	44 - 91	3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_3	PF13920	44 - 96	2.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4	PF15227	44 - 91	9.8e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	89, 400
AccB1I	GGYRCC	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	2 cut(s)	177, 385
AclWI	GGATC	1 cut(s)	152
AfiI	CCNNNNNNNGG	4 cut(s)	98, 160, 311, 569
AflIII	ACRYGT	1 cut(s)	217
AhdI	GACNNNNNGTC	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	585, 596
AluBI	AGCT	3 cut(s)	107, 447, 629
AluI	AGCT	3 cut(s)	107, 447, 629
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	4 cut(s)	241, 471, 576, 675
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	658
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	73, 283, 499
AvaII	GGWCC	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	2 cut(s)	587, 598
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	4 cut(s)	241, 471, 576, 675
BfaI	CTAG	1 cut(s)	730
BfuAI	ACCTGC	2 cut(s)	89, 400
BisI	GCNGC	1 cut(s)	659
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	1 cut(s)	660
Bme1390I	CCNGG	2 cut(s)	587, 598
Bme18I	GGWCC	1 cut(s)	609
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	5 cut(s)	90, 182, 303, 349, 610
BmrFI	CCNGG	2 cut(s)	587, 598
BmsI	GCATC	4 cut(s)	19, 437, 645, 714
BpiI	GAAGAC	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	424
Bpu1102I	GCTNAGC	1 cut(s)	630
Bsa29I	ATCGAT	1 cut(s)	686
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	6 cut(s)	73, 103, 451, 481, 573, 603
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 160, 311, 569
BseBI	CCWGG	2 cut(s)	587, 598
BseCI	ATCGAT	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	657, 708
BseLI	CCNNNNNNNGG	4 cut(s)	98, 160, 311, 569
BseMII	CTCAG	2 cut(s)	438, 644
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	670
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	4 cut(s)	98, 160, 311, 569
BsmAI	GTCTC	4 cut(s)	241, 471, 576, 675
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	43, 183
Bsp143I	GATC	2 cut(s)	157, 244
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	2 cut(s)	177, 385
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	437, 643
BspDI	ATCGAT	1 cut(s)	686
BspLI	GGNNCC	5 cut(s)	90, 182, 303, 349, 610
BspMI	ACCTGC	2 cut(s)	89, 400
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	157, 244
BssSI	CACGAG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	587, 598
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	179, 194, 449
BstDEI	CTNAG	2 cut(s)	424, 630
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	657, 708
BstKTI	GATC	2 cut(s)	160, 247
BstMAI	GTCTC	4 cut(s)	241, 471, 576, 675
BstMBI	GATC	2 cut(s)	157, 244
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 95, 104, 198, 401
BstNI	CCWGG	2 cut(s)	587, 598
BstNSI	RCATGY	2 cut(s)	221, 325
BstSCI	CCNGG	2 cut(s)	585, 596
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	1 cut(s)	318
Bsu15I	ATCGAT	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	196
BsuTUI	ATCGAT	1 cut(s)	686
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	657, 708
BtsIMutI	CAGTG	2 cut(s)	365, 372
BveI	ACCTGC	2 cut(s)	89, 400
Cac8I	GCNNGC	3 cut(s)	179, 194, 449
Cfr13I	GGNCC	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	686
CseI	GACGC	1 cut(s)	371
CsiI	ACCWGGT	1 cut(s)	585
CviAII	CATG	4 cut(s)	44, 155, 218, 322
DdeI	CTNAG	2 cut(s)	424, 630
DpnI	GATC	2 cut(s)	159, 246
DpnII	GATC	2 cut(s)	157, 244
DriI	GACNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	585, 596
FaeI	CATG	4 cut(s)	47, 158, 221, 325
FaiI	YATR	8 cut(s)	45, 59, 156, 219, 312, 323, 380, 480
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	4 cut(s)	43, 154, 217, 321
FauI	CCCGC	2 cut(s)	170, 392
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	659
FokI	GGATG	2 cut(s)	664, 695
Fsp4HI	GCNGC	1 cut(s)	659
FspBI	CTAG	1 cut(s)	730
GluI	GCNGC	1 cut(s)	659
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	4 cut(s)	47, 158, 221, 325
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	3 cut(s)	73, 283, 499
Hpy166II	GTNNAC	2 cut(s)	372, 592
Hpy188I	TCNGA	3 cut(s)	28, 417, 438
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	2 cut(s)	372, 592
HpyAV	CCTTC	4 cut(s)	342, 480, 622, 731
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	5 cut(s)	132, 201, 451, 658, 705
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 95, 104, 198, 401
HpyF3I	CTNAG	2 cut(s)	424, 630
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	47, 158, 221, 325
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	157, 244
LmnI	GCTCC	3 cut(s)	94, 353, 400
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	4 cut(s)	19, 437, 645, 714
MabI	ACCWGGT	1 cut(s)	585
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	166, 213
MalI	GATC	2 cut(s)	159, 246
MboI	GATC	2 cut(s)	157, 244
MboII	GAAGA	7 cut(s)	7, 222, 318, 327, 327, 685, 718
MfeI	CAATTG	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	43, 183
MluCI	AATT	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	116, 303
MnlI	CCTC	8 cut(s)	304, 311, 315, 433, 507, 566, 642, 728
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	587, 598
MunI	CAATTG	1 cut(s)	259
MvaI	CCWGG	2 cut(s)	587, 598
MwoI	GCNNNNNNNGC	5 cut(s)	38, 95, 104, 198, 401
NdeII	GATC	2 cut(s)	157, 244
NlaIII	CATG	4 cut(s)	47, 158, 221, 325
NlaIV	GGNNCC	5 cut(s)	90, 182, 303, 349, 610
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	2 cut(s)	221, 325
PciI	ACATGT	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	518
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	1 cut(s)	660
PpuMI	RGGWCCY	1 cut(s)	609
PscI	ACATGT	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	585, 596
PspGI	CCWGG	2 cut(s)	585, 596
PspN4I	GGNNCC	5 cut(s)	90, 182, 303, 349, 610
PspPI	GGNCC	1 cut(s)	609
PspPPI	RGGWCCY	1 cut(s)	609
PsyI	GACNNNGTC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	1 cut(s)	659
Sau3AI	GATC	2 cut(s)	157, 244
Sau96I	GGNCC	1 cut(s)	609
ScrFI	CCNGG	2 cut(s)	587, 598
SduI	GDGCHC	2 cut(s)	43, 183
SexAI	ACCWGGT	1 cut(s)	585
SfaNI	GCATC	4 cut(s)	19, 437, 645, 714
SinI	GGWCC	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	177, 385
SspMI	CTAG	1 cut(s)	730
StyD4I	CCNGG	2 cut(s)	585, 596
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	686
TasI	AATT	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	372, 379
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	5 cut(s)	7, 46, 126, 462, 467
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	372, 379
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	609
XceI	RCATGY	2 cut(s)	221, 325
XmiI	GTMKAC	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.