Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Reverse (-)

18553978 .. 18554391

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTTGTACCACGTAGACCCCCACCTATGTCCAACACTTCGATAACTGCTACTACCGCCACATCAACGCCAAGACAGCAACTTCATCCAGATTTTTTGCAAAGGCATTCACAGTCCGTTCACGATCAGTACTACCCTGCTTATGGAGGTCATGCCACAAACTCAGAATCAGCTTATCTCGGGGGTACAACGATGACAAATTTATCCAATCCAACGATTGGAATGGTTGGAGAGTTTGTGTTTGCAAGGATGTTTGGGAGCTCAAACACCAGTTTGTTTACTTACCCGTATCTGAATTCATACACCCCAAGCAGTCCTAGGATGAGAAGGCAGGAAGTAGAGCTTGACAAATCGCTCAATAGAGTAACATTCTTTCTTTTCTGCTGTTTTATGTTGTGCCTTCTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

138

Amino Acids

15.48

Weight (kDa)

8.93

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	199, 295
AfaI	GTAC	3 cut(s)	9, 131, 187
AfiI	CCNNNNNNNGG	2 cut(s)	143, 218
AluBI	AGCT	3 cut(s)	173, 261, 343
AluI	AGCT	3 cut(s)	173, 261, 343
Alw21I	GWGCWC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	199, 295
AspA2I	CCTAGG	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	179
AvrII	CCTAGG	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	318
BlnI	CCTAGG	1 cut(s)	317
BmcAI	AGTACT	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 218
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	3 cut(s)	85, 255, 327
BseLI	CCNNNNNNNGG	2 cut(s)	143, 218
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	143, 218
BsmI	GAATGC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	85, 255, 327
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 76
BtsCI	GGATG	3 cut(s)	85, 255, 327
Csp6I	GTAC	3 cut(s)	8, 130, 186
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	3 cut(s)	173, 261, 343
CviKI_1	RGCY	3 cut(s)	173, 261, 343
CviQI	GTAC	3 cut(s)	8, 130, 186
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	155
FaiI	YATR	5 cut(s)	29, 144, 153, 301, 392
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	16
FokI	GGATG	3 cut(s)	72, 262, 334
FriOI	GRGCYC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	318
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	17, 121, 279
Hpy188I	TCNGA	3 cut(s)	166, 294, 413
Hpy188III	TCNNGA	2 cut(s)	89, 122
Hpy8I	GTNNAC	3 cut(s)	17, 121, 279
HpyAV	CCTTC	2 cut(s)	321, 410
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	100, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 76
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	4 cut(s)	102, 150, 283, 317
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	2 cut(s)	199, 295
MmeI	TCCRAC	3 cut(s)	57, 208, 236
MnlI	CCTC	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	56, 76
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	155
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	263
RsaI	GTAC	3 cut(s)	9, 131, 187
RsaNI	GTAC	3 cut(s)	8, 130, 186
SacI	GAGCTC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	16, 28, 151, 175, 263, 345
Sse9I	AATT	2 cut(s)	199, 295
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	199, 295
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	74, 288
TspGWI	ACGGA	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	218
XapI	RAATTY	2 cut(s)	199, 295
XmaJI	CCTAGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.