Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Reverse (-)

2194863 .. 2199836

Gene Structure 4974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G046100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCCTTGCAACAATACTTTGCACATGAATGTAAATCCATCCCGGGAACAGCAACAGATTCAGAAAATTCCAAAGCTGGCTTTGACTGCAACATCTGCTTAGAGTTTGCACATGAGCCAGTGGTCACCTTCTGCGGCCATCTATATTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCCCTTGCCTCCGACGAGTGCCCTCAATGCCCTGTTTGCAAGGCTGATATATCACACACCACCATGGTCCCCCTTTATGGCCGGGGCCAAACATCTCCTGAAACTGAGCTTGAAGTAAAGGCACCCAACAGGGGAATGGCAATACCACCCAGGCCATCAGCATGTGATACACAAGCTCTTATATCTAACACATCTCCTACCGGTCAGCAACTTCCATATCGTAACCCTTATCAGAACCAACAACATAGCCCTCCTCATCCATATGGTAGTTTTGGGGAACATTCTTCTGCACCGCTGCTTAACCTTGGAAGCACTACAATGGCAGGTATCCACCAGCATCCGGCGGTTGGGGTGTTTGGGGAAATGGTCTATGCAAGGGTGTTTGGAAACTCAGAGAGCTTATATGCATACCCAAATTCGTATCACTTAACGGGAAGTAGTAGTCCGAGGCTGAGAAGGCAGGAGATGCAGGCAGACAAGTCACTAAACAGAATTTCAATTTTCCTCTTTTGTTGCTTGCTTTTGTGCCTTCTTGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

244

Amino Acids

26.82

Weight (kDa)

6.39

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	3 cut(s)	135, 482, 533
AcoI	YGGCCR	2 cut(s)	136, 268
AcsI	RAATTY	3 cut(s)	67, 604, 681
AfiI	CCNNNNNNNGG	4 cut(s)	266, 320, 529, 536
AgeI	ACCGGT	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	302, 687
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	4 cut(s)	77, 298, 365, 588
AluI	AGCT	4 cut(s)	77, 298, 365, 588
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	6 cut(s)	3, 136, 152, 268, 274, 341
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	3 cut(s)	67, 604, 681
AsiGI	ACCGGT	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	256, 274
AsuC2I	CCSGG	3 cut(s)	44, 45, 272
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	3 cut(s)	47, 147, 352
BciT130I	CCWGG	1 cut(s)	340
BciVI	GTATCC	1 cut(s)	527
BcnI	CCSGG	3 cut(s)	44, 45, 272
BfuAI	ACCTGC	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	527
BisI	GCNGC	2 cut(s)	136, 485
BlsI	GCNGC	2 cut(s)	137, 486
Bme1390I	CCNGG	4 cut(s)	44, 45, 272, 340
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	256, 274
BmiI	GGNNCC	3 cut(s)	258, 275, 312
BmrFI	CCNGG	4 cut(s)	44, 45, 272, 340
BmsI	GCATC	3 cut(s)	168, 535, 645
BpuMI	CCSGG	3 cut(s)	44, 45, 272
BsaJI	CCNNGG	6 cut(s)	43, 252, 271, 338, 493, 635
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 320, 529, 536
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	6 cut(s)	43, 252, 271, 338, 493, 635
BseGI	GGATG	3 cut(s)	39, 445, 526
BseLI	CCNNNNNNNGG	4 cut(s)	266, 320, 529, 536
BseMII	CTCAG	3 cut(s)	285, 594, 632
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	6 cut(s)	5, 138, 154, 270, 276, 343
BshNI	GGYRCC	1 cut(s)	310
BshTI	ACCGGT	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	44, 271, 390, 530
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	266, 320, 529, 536
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	6 cut(s)	5, 138, 154, 270, 276, 343
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	3 cut(s)	135, 482, 533
BspANI	GGCC	6 cut(s)	5, 138, 154, 270, 276, 343
BspCNI	CTCAG	3 cut(s)	286, 593, 633
BspLI	GGNNCC	3 cut(s)	258, 275, 312
BspMI	ACCTGC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	6 cut(s)	43, 252, 271, 338, 493, 635
BssT1I	CCWWGG	2 cut(s)	252, 493
Bst2UI	CCWGG	1 cut(s)	340
BstAPI	GCANNNNNTGC	2 cut(s)	96, 655
BstC8I	GCNNGC	4 cut(s)	79, 152, 660, 707
BstDEI	CTNAG	4 cut(s)	100, 294, 580, 641
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	39, 445, 526
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 96, 156, 194, 216, 225, 646, 655
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	4 cut(s)	42, 43, 270, 338
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	6 cut(s)	5, 138, 154, 270, 276, 343
BtgI	CCRYGG	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	39, 445, 526
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	4 cut(s)	79, 152, 660, 707
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	256, 274
Cfr9I	CCCGGG	1 cut(s)	43
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	4 cut(s)	26, 113, 253, 351
DdeI	CTNAG	4 cut(s)	100, 294, 580, 641
EaeI	YGGCCR	2 cut(s)	136, 268
Eco130I	CCWWGG	2 cut(s)	252, 493
Eco47I	GGWCC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	43
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	252, 493
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	2 cut(s)	252, 493
FaeI	CATG	4 cut(s)	29, 116, 256, 354
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	4 cut(s)	25, 112, 252, 350
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	136, 485
FokI	GGATG	3 cut(s)	26, 432, 513
Fsp4HI	GCNGC	2 cut(s)	136, 485
GluI	GCNGC	2 cut(s)	136, 485
HaeIII	GGCC	6 cut(s)	5, 138, 154, 270, 276, 343
HapII	CCGG	4 cut(s)	44, 271, 390, 530
Hin1II	CATG	4 cut(s)	29, 116, 256, 354
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	4 cut(s)	44, 271, 390, 530
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	6 cut(s)	64, 202, 423, 583, 636, 731
Hpy188III	TCNNGA	2 cut(s)	181, 287
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	139, 639, 728
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 96, 156, 194, 216, 225, 646, 655
HpyF3I	CTNAG	4 cut(s)	100, 294, 580, 641
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	29, 116, 256, 354
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	3 cut(s)	168, 535, 645
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	124, 410, 669
MboII	GAAGA	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	4 cut(s)	67, 604, 681, 687
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	199, 208, 222, 450, 453, 630, 704
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	2 cut(s)	489, 617
MslI	CAYNNNNRTG	5 cut(s)	28, 251, 349, 450, 506
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	4 cut(s)	44, 271, 390, 530
MspR9I	CCNGG	4 cut(s)	44, 45, 272, 340
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	8 cut(s)	87, 96, 156, 194, 216, 225, 646, 655
NciI	CCSGG	3 cut(s)	44, 45, 272
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	451
NlaIII	CATG	4 cut(s)	29, 116, 256, 354
NlaIV	GGNNCC	3 cut(s)	258, 275, 312
NmuCI	GTSAC	2 cut(s)	124, 669
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	2 cut(s)	137, 486
Psp6I	CCWGG	1 cut(s)	338
PspEI	GGTNACC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	258, 275, 312
PspPI	GGNCC	2 cut(s)	256, 274
RseI	CAYNNNNRTG	5 cut(s)	28, 251, 349, 450, 506
SaqAI	TTAA	2 cut(s)	489, 617
SatI	GCNGC	2 cut(s)	136, 485
Sau96I	GGNCC	2 cut(s)	256, 274
ScrFI	CCNGG	4 cut(s)	44, 45, 272, 340
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	8 cut(s)	79, 131, 180, 300, 367, 495, 517, 590
SfaNI	GCATC	3 cut(s)	168, 535, 645
SinI	GGWCC	1 cut(s)	256
SmaI	CCCGGG	1 cut(s)	45
SmiMI	CAYNNNNRTG	5 cut(s)	28, 251, 349, 450, 506
Sse9I	AATT	4 cut(s)	67, 604, 681, 687
SsiI	CCGC	3 cut(s)	135, 482, 533
StyD4I	CCNGG	4 cut(s)	42, 43, 270, 338
StyI	CCWWGG	2 cut(s)	252, 493
TaiI	ACGT	1 cut(s)	180
TasI	AATT	4 cut(s)	67, 604, 681, 687
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	489, 617
Tru9I	TTAA	2 cut(s)	489, 617
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	124, 669
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	2 cut(s)	124, 669
TspDTI	ATGAA	1 cut(s)	42
TspMI	CCCGGG	1 cut(s)	43
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	67, 604, 681
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmaI	CCCGGG	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.