Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Forward (+)

10857122 .. 10860549

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G183300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAACAGAACTTCTATGAGCCTGAGGGACACTTCGACTCAGATGCAGATGTTTCGATCAAGAAGTGGAAGTCAATCTCAACCCTAACTACAGACTCAGAGAATGATGATGGCGGCTTTGACTGCAACATATGCTTAGATTCAGCACATGAACCTGTTGTGACTCTATGCGGTCACCTGTACTGCTGGCCATGCATCTACAAGTGGCTTCAGGTGCCAACCACCTCTGATAAATCATCCCATATGAAGGGAACTTGTCCTGTCTGTAAGGCTAACATCACCCATGCTTTGTTGGTTCCCCTCTACGGCCGCGGAACATCCCATTCAGATTCTGAAGGAAAGAAACCTCAGTTGGGGCAGATCGTACCACGCAGACCATCGCCTGAGTTGAACACTTTGATGACTAATATTCTCGCTGGATCGCTGCCGAGACGGCAACTCGATCCAAATTATTTAGAGAGGCATTCACAGCCTGTTCACGATCAATACTACCCTTCACAGGGAGGTTATGCTGCAAACTCAGAATCATCTGATCTTGGGCCTTCACATGGAGGTTATGCTGCAAACTCAGAATCATCTTATCTTGGGGCTGCAACGATGACAACTTTATCCCATCCAACAATTGGAATGGTTGGAGAGTTTGTATTTGCAAGGATGTTTGGAAGCTCGGACACAAGTATATTTAGTTACCCTTATATGAATTCTTACCCCCCAAGCAGTCCTAGGATGAGAAGGCAGGAAGTGCAGCTTGACAAATCTCTCAACAGAGTAACCATTTTTCTCTTCTGCTGCTTTATTTTGTGCCTTCTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

273

Amino Acids

30.23

Weight (kDa)

5.9

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccII	CGCG	1 cut(s)	312
AciI	CCGC	4 cut(s)	114, 171, 310, 312
AclWI	GGATC	2 cut(s)	427, 437
AcoI	YGGCCR	2 cut(s)	188, 307
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	2 cut(s)	194, 354
AfaI	GTAC	2 cut(s)	182, 366
AfiI	CCNNNNNNNGG	7 cut(s)	247, 305, 353, 499, 500, 548, 623
AgsI	TTSAA	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	2 cut(s)	666, 748
AluI	AGCT	2 cut(s)	666, 748
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	427, 437
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	188, 307, 539
ApeKI	GCWGC	6 cut(s)	424, 512, 560, 590, 745, 789
ApoI	RAATTY	1 cut(s)	700
AspA2I	CCTAGG	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	167, 271
AvrII	CCTAGG	1 cut(s)	722
AxyI	CCTNAGG	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	214
BbvI	GCAGC	6 cut(s)	411, 499, 547, 577, 757, 776
BccI	CCATC	3 cut(s)	104, 385, 621
BceAI	ACGGC	2 cut(s)	322, 449
BcgI	CGANNNNNNTGC	4 cut(s)	26, 36, 60, 70
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	1 cut(s)	723
BfmI	CTRYAG	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	433
BisI	GCNGC	8 cut(s)	115, 310, 425, 513, 561, 591, 746, 790
BlnI	CCTAGG	1 cut(s)	722
BlsI	GCNGC	8 cut(s)	116, 311, 426, 514, 562, 592, 747, 791
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	2 cut(s)	216, 297
BmsI	GCATC	2 cut(s)	34, 204
BsaJI	CCNNGG	2 cut(s)	310, 722
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	7 cut(s)	247, 305, 353, 499, 500, 548, 623
Bse21I	CCTNAGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	310, 722
BseGI	GGATG	5 cut(s)	236, 317, 613, 660, 732
BseLI	CCNNNNNNNGG	7 cut(s)	247, 305, 353, 499, 500, 548, 623
BseMII	CTCAG	7 cut(s)	15, 54, 111, 362, 375, 534, 582
BseX3I	CGGCCG	1 cut(s)	307
BseXI	GCAGC	6 cut(s)	411, 499, 547, 577, 757, 776
BsgI	GTGCAG	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	3 cut(s)	190, 309, 541
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	7 cut(s)	247, 305, 353, 499, 500, 548, 623
BsmAI	GTCTC	1 cut(s)	424
BsmBI	CGTCTC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	190, 309, 541
Bsp143I	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
BspACI	CCGC	4 cut(s)	114, 171, 310, 312
BspANI	GGCC	3 cut(s)	190, 309, 541
BspCNI	CTCAG	7 cut(s)	16, 53, 110, 361, 376, 533, 581
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	216, 297
BspPI	GGATC	2 cut(s)	427, 437
BspT107I	GGYRCC	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	310, 722
BssMI	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
BssT1I	CCWWGG	1 cut(s)	722
Bst6I	CTCTTC	1 cut(s)	788
BstAPI	GCANNNNNTGC	2 cut(s)	132, 742
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	8 cut(s)	24, 40, 97, 136, 348, 384, 520, 568
BstDSI	CCRYGG	1 cut(s)	310
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	5 cut(s)	236, 317, 613, 660, 732
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	6 cut(s)	60, 363, 422, 445, 484, 535
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	7 cut(s)	123, 132, 192, 214, 433, 469, 742
BstPI	GGTNACC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	411, 499, 547, 577, 757, 776
BstZI	CGGCCG	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	190, 309, 541
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	236, 317, 613, 660, 732
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	539
Cfr42I	CCGCGG	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	181, 365
CviAII	CATG	4 cut(s)	149, 192, 284, 548
CviQI	GTAC	2 cut(s)	181, 365
DdeI	CTNAG	8 cut(s)	24, 40, 97, 136, 348, 384, 520, 568
DpnI	GATC	6 cut(s)	59, 362, 421, 444, 483, 534
DpnII	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
EaeI	YGGCCR	2 cut(s)	188, 307
EagI	CGGCCG	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
EclXI	CGGCCG	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	722
Eco52I	CGGCCG	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	194, 354
Eco81I	CCTNAGG	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	722
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	4 cut(s)	152, 195, 287, 551
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	4 cut(s)	148, 191, 283, 547
FauNDI	CATATG	2 cut(s)	131, 243
Fnu4HI	GCNGC	8 cut(s)	115, 310, 425, 513, 561, 591, 746, 790
FokI	GGATG	5 cut(s)	223, 304, 600, 667, 739
Fsp4HI	GCNGC	8 cut(s)	115, 310, 425, 513, 561, 591, 746, 790
FspBI	CTAG	1 cut(s)	723
GluI	GCNGC	8 cut(s)	115, 310, 425, 513, 561, 591, 746, 790
HaeIII	GGCC	3 cut(s)	190, 309, 541
Hin1II	CATG	4 cut(s)	152, 195, 287, 551
HinfI	GANTC	7 cut(s)	38, 95, 140, 163, 329, 524, 572
HphI	GGTGA	2 cut(s)	167, 271
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188III	TCNNGA	2 cut(s)	61, 479
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	6 cut(s)	241, 329, 504, 552, 726, 815
HpyCH4V	TGCA	8 cut(s)	47, 126, 195, 515, 563, 593, 650, 745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	123, 132, 192, 214, 433, 469, 742
HpyF3I	CTNAG	8 cut(s)	24, 40, 97, 136, 348, 384, 520, 568
Hsp92II	CATG	4 cut(s)	152, 195, 287, 551
KspI	CCGCGG	1 cut(s)	313
Kzo9I	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
Lsp1109I	GCAGC	6 cut(s)	411, 499, 547, 577, 757, 776
LweI	GCATC	2 cut(s)	34, 204
MaeI	CTAG	1 cut(s)	723
MaeIII	GTNAC	4 cut(s)	160, 173, 686, 769
MalI	GATC	6 cut(s)	59, 362, 421, 444, 483, 534
MboI	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
MboII	GAAGA	1 cut(s)	775
MfeI	CAATTG	1 cut(s)	621
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	3 cut(s)	448, 621, 700
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	3 cut(s)	32, 89, 157
MmeI	TCCRAC	2 cut(s)	613, 641
MnlI	CCTC	7 cut(s)	19, 235, 311, 357, 453, 497, 545
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	190
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	463
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	7 cut(s)	123, 132, 192, 214, 433, 469, 742
NdeI	CATATG	2 cut(s)	131, 243
NdeII	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
NlaIII	CATG	4 cut(s)	152, 195, 287, 551
NlaIV	GGNNCC	2 cut(s)	216, 297
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	160, 173
NsiI	ATGCAT	1 cut(s)	197
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	4 cut(s)	140, 329, 524, 572
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	8 cut(s)	116, 311, 426, 514, 562, 592, 747, 791
PleI	GAGTC	3 cut(s)	32, 89, 157
PpsI	GAGTC	3 cut(s)	32, 89, 157
PspEI	GGTNACC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	216, 297
PspPI	GGNCC	1 cut(s)	539
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	182, 366
RsaNI	GTAC	2 cut(s)	181, 365
RseI	CAYNNNNRTG	1 cut(s)	398
SacII	CCGCGG	1 cut(s)	313
SatI	GCNGC	8 cut(s)	115, 310, 425, 513, 561, 591, 746, 790
Sau3AI	GATC	6 cut(s)	57, 360, 419, 442, 481, 532
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	3 cut(s)	32, 89, 157
SetI	ASST	9 cut(s)	157, 180, 216, 227, 349, 508, 556, 668, 750
SfaNI	GCATC	2 cut(s)	34, 204
SfcI	CTRYAG	1 cut(s)	90
Sfr303I	CCGCGG	1 cut(s)	313
SgrBI	CCGCGG	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	448, 621, 700
SsiI	CCGC	4 cut(s)	114, 171, 310, 312
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	722
TaqI	TCGA	3 cut(s)	36, 56, 441
TasI	AATT	3 cut(s)	448, 621, 700
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	2 cut(s)	117, 312
TfiI	GAWTC	4 cut(s)	140, 329, 524, 572
TseFI	GTSAC	2 cut(s)	160, 173
TseI	GCWGC	6 cut(s)	424, 512, 560, 590, 745, 789
Tsp45I	GTSAC	2 cut(s)	160, 173
TspDTI	ATGAA	3 cut(s)	165, 260, 713
Van91I	CCANNNNNTGG	1 cut(s)	623
XapI	RAATTY	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XmaJI	CCTAGG	1 cut(s)	722
XspI	CTAG	1 cut(s)	723
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.