Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Reverse (-)

13229375 .. 13231968

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20120.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAACAGAACTTCTTTGAGCCTCAGGGACACTTCGAGTCAGACGGAGATATTTCGGTAAAGAAGTGGAAATCAATGTCTACCCCTACTACTGTCTCAGACAATGATAGTGGCTGCTTTGAGTGCAACATCTGCTTAGATTCAGCACATGAACCTGTGGTGACACTCTGTGGTCACCTGTACTGCTGGCCTTGCATTTACAAATGGCTTCAGGTTCCAAGTGCTTCTGATGAACCAAACCAGCTGCAGCAAACCTGTCCTGTCTGTAAGGCTAATATTACTCCATCCTCGGTGGTTCCCCTCTATGGTCGTGGTACAGGTTCAAAAGGAAAGAAACCCAATTTGGGTCTGGTTGTACCACGCAGACCACCACCTAGGTTGGACACTTCGTTTACATCTACCAGCCCTACATCGCCTTCAAGGCAGCAACTTCATTCAAATTATTATTATACACAGACACATCCACAGTCGGTTTATGATCAATACAGCCCTTCTGATGGAGGTTATGCCACAAATTCAGAATCAGCTTATCTTGGCAGTACGATGTTGACACATTTATCCAATCCAACGATAGGGATGGTTGGAGAGTTTGTGTTTGCAAGGATGTTTGGCAGCTCAGACACAAATTTGTTTGCTCATCCTTATCTGAATACATACCCACCGAGCAGTCCTAGGATGAGAAGGCAGGAAGTTCAGCTTGACAAATCTCTTAATAGAGTCACAATCTTTCTTTTCTGCTGCTTTATGCTGTGCCTTCTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

256

Amino Acids

28.52

Weight (kDa)

6.63

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	60 - 90	7.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	60 - 109	2.4e-06	Ring finger domain
zf-RING_5	PF14634	60 - 109	8e-06	zinc-RING finger domain
zf-C3HC4_3	PF13920	60 - 113	3.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	61 - 108	3.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	61 - 90	5.1e-08	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	61 - 113	1.8e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4_4	PF15227	61 - 108	4e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	514, 625
AcuI	CTGAAG	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	4 cut(s)	182, 316, 357, 541
AfiI	CCNNNNNNNGG	4 cut(s)	305, 344, 497, 572
AgsI	TTSAA	3 cut(s)	324, 420, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	4 cut(s)	244, 527, 615, 697
AluI	AGCT	4 cut(s)	244, 527, 615, 697
Alw26I	GTCTC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	6 cut(s)	114, 244, 247, 424, 612, 738
ApoI	RAATTY	2 cut(s)	514, 625
AspA2I	CCTAGG	2 cut(s)	374, 671
AsuHPI	GGTGA	2 cut(s)	167, 172
AvrII	CCTAGG	2 cut(s)	374, 671
AxyI	CCTNAGG	1 cut(s)	24
BbvI	GCAGC	6 cut(s)	101, 231, 259, 436, 624, 725
BccI	CCATC	3 cut(s)	292, 491, 571
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	375, 672
BfmI	CTRYAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	421
BisI	GCNGC	6 cut(s)	115, 245, 248, 425, 613, 739
BlnI	CCTAGG	2 cut(s)	374, 671
BlsI	GCNGC	6 cut(s)	116, 246, 249, 426, 614, 740
BmiI	GGNNCC	2 cut(s)	216, 297
BsaJI	CCNNGG	3 cut(s)	288, 374, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	305, 344, 497, 572
Bse21I	CCTNAGG	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	288, 374, 671
BseGI	GGATG	6 cut(s)	284, 460, 582, 609, 637, 681
BseLI	CCNNNNNNNGG	4 cut(s)	305, 344, 497, 572
BseMII	CTCAG	3 cut(s)	38, 111, 630
BseXI	GCAGC	6 cut(s)	101, 231, 259, 436, 624, 725
BshFI	GGCC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	4 cut(s)	305, 344, 497, 572
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	478
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	37, 110, 629
BspLI	GGNNCC	2 cut(s)	216, 297
BspMAI	CTGCAG	1 cut(s)	249
BssECI	CCNNGG	3 cut(s)	288, 374, 671
BssMI	GATC	1 cut(s)	478
BssT1I	CCWWGG	2 cut(s)	374, 671
Bst4CI	ACNGT	2 cut(s)	94, 468
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	4 cut(s)	24, 97, 136, 616
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	6 cut(s)	284, 460, 582, 609, 637, 681
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 132, 192, 421
BstPI	GGTNACC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	6 cut(s)	101, 231, 259, 436, 624, 725
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	6 cut(s)	284, 460, 582, 609, 637, 681
Cac8I	GCNNGC	1 cut(s)	188
Csp6I	GTAC	4 cut(s)	181, 315, 356, 540
CspCI	CAANNNNNGTGG	4 cut(s)	91, 126, 360, 395
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	4 cut(s)	181, 315, 356, 540
DdeI	CTNAG	4 cut(s)	24, 97, 136, 616
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DraIII	CACNNNGTG	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	374, 671
Eco57I	CTGAAG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	374, 671
ErhI	CCWWGG	2 cut(s)	374, 671
FaeI	CATG	1 cut(s)	152
FaiI	YATR	7 cut(s)	150, 306, 450, 477, 507, 655, 746
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	6 cut(s)	115, 245, 248, 425, 613, 739
FokI	GGATG	6 cut(s)	271, 447, 589, 616, 624, 688
Fsp4HI	GCNGC	6 cut(s)	115, 245, 248, 425, 613, 739
FspBI	CTAG	2 cut(s)	375, 672
GluI	GCNGC	6 cut(s)	115, 245, 248, 425, 613, 739
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	4 cut(s)	38, 140, 521, 717
HphI	GGTGA	2 cut(s)	167, 172
Hpy166II	GTNNAC	3 cut(s)	81, 393, 549
Hpy188I	TCNGA	8 cut(s)	43, 100, 229, 496, 520, 619, 648, 767
Hpy8I	GTNNAC	3 cut(s)	81, 393, 549
HpyAV	CCTTC	4 cut(s)	426, 501, 675, 764
HpyCH4III	ACNGT	2 cut(s)	94, 468
HpyCH4V	TGCA	4 cut(s)	126, 195, 247, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 132, 192, 421
HpyF3I	CTNAG	4 cut(s)	24, 97, 136, 616
Hsp92II	CATG	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
Lsp1109I	GCAGC	6 cut(s)	101, 231, 259, 436, 624, 725
MaeI	CTAG	2 cut(s)	375, 672
MaeIII	GTNAC	3 cut(s)	160, 173, 718
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MluCI	AATT	4 cut(s)	340, 439, 514, 625
MlyI	GAGTC	2 cut(s)	47, 726
MmeI	TCCRAC	3 cut(s)	360, 562, 590
MnlI	CCTC	4 cut(s)	33, 298, 311, 494
MseI	TTAA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	244
MwoI	GCNNNNNNNGC	4 cut(s)	123, 132, 192, 421
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	2 cut(s)	216, 297
NmuCI	GTSAC	3 cut(s)	160, 173, 718
PfeI	GAWTC	2 cut(s)	140, 521
PkrI	GCNGC	6 cut(s)	116, 246, 249, 426, 614, 740
PleI	GAGTC	2 cut(s)	46, 725
PpsI	GAGTC	2 cut(s)	46, 725
PspEI	GGTNACC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	216, 297
PstI	CTGCAG	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	4 cut(s)	182, 316, 357, 541
RsaNI	GTAC	4 cut(s)	181, 315, 356, 540
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	6 cut(s)	115, 245, 248, 425, 613, 739
Sau3AI	GATC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	47, 726
SfcI	CTRYAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	340, 439, 514, 625
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	375, 672
StyI	CCWWGG	2 cut(s)	374, 671
TaaI	ACNGT	2 cut(s)	94, 468
TaqI	TCGA	1 cut(s)	36
TasI	AATT	4 cut(s)	340, 439, 514, 625
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	140, 521
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TseFI	GTSAC	3 cut(s)	160, 173, 718
TseI	GCWGC	6 cut(s)	114, 244, 247, 424, 612, 738
Tsp45I	GTSAC	3 cut(s)	160, 173, 718
TspDTI	ATGAA	3 cut(s)	165, 246, 422
TspGWI	ACGGA	1 cut(s)	60
XapI	RAATTY	2 cut(s)	514, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmaJI	CCTAGG	2 cut(s)	374, 671
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	2 cut(s)	375, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.