Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Forward (+)

35590940 .. 35593894

Gene Structure 2955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1245000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACACTTGAGACCGAAAACAACTTTACACCAAAATACAATACTCAAAGATCTCTTTCTTGTTTTGTATTTATACAACCTTCACCTCCATCCTTTCGCTCTCAACCATTCCACCTCTTCTCTCTGTCGCCAACAATCAAACCCACCACCTCTCTCTCTCTCTCTTCTCTTCTCTCTTTCTTAACCTGTAAGATTCGGAGCTTGTTTTTGATAGCCACCTCGATCCCTTCCAGCTTTTTCTCTTCCTCGATGCTTAAACATATCGCTATGGAACAGAACTTGTATGAGCCTGAGACACACTTTGTTTCCGTTGGAGATGTTTCAGTCAAGAAGTGGAATTCAATCTCATCCCCAACTACAGTCTCGGACAACGACACTGGCAGCTTTGAATGCAACATATGCTTAGATTCAGCACATGAACCTGTGGTGACTCTCTGCGGTCACCTGTACTGCTGGCCGTGCATTTACAAGTGGCTTCAGGTCCCAACCGCCTCTGATGAACAATCCCACCCGCAGCAGACTTGTCCTGTCTGTAAGGCTAACATCACCCCTTCTTCAGTGGTTCCCCTCTATGGTCGGGGCTTATCCTCTACAGATTCTGATGGAAAGAAACCTCAGTTGGATCTGGTCGTACCACATAGACCCCCACCGATGTTGAACACTTCGATTACTGCTACAACTGCCACATCAGTGCCAAGACAGCAACTTCATCCAAATTTTTTGCAAAGGCATTCAGAGTCTGTTCACGATCAGTACTACCCCGCTTATGGTGGTTATGCTACAAACTCAGAACCAGCATATCTCGGGGGTACAGCGTTGACAAATTTATCCAATCCAACGATTGGAATGGTTGGAGAGTTTGTGTTTGAAAGGATGTTTGGGAGCTCAAACACTAATTTGTTTACTTACCCGTATCCGAATTCGTACACCCAAAGTAGTCATAGGATGAGAAGGCAGGAAGTAGAGCTGGACAGATCTCTCAATAGAGTAACCATCTTTCTTTTCTGCTGTTTTATGCTGTGCCTTCTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

346

Amino Acids

38.61

Weight (kDa)

6.81

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	130 - 179	1.5e-06	zinc-RING finger domain
zf-C3HC4_3	PF13920	130 - 183	7e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	131 - 178	4.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	131 - 176	4e-08	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	131 - 183	1.7e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	842
AciI	CCGC	4 cut(s)	438, 489, 512, 762
AclWI	GGATC	2 cut(s)	217, 630
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	4 cut(s)	337, 715, 823, 919
AcuI	CTGAAG	2 cut(s)	461, 540
AfaI	GTAC	5 cut(s)	449, 633, 755, 811, 926
AfiI	CCNNNNNNNGG	3 cut(s)	572, 767, 842
AgsI	TTSAA	4 cut(s)	342, 389, 658, 869
AjuI	GAANNNNNNNTTGG	4 cut(s)	602, 634, 861, 893
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	5 cut(s)	201, 234, 384, 885, 967
AluI	AGCT	5 cut(s)	201, 234, 384, 885, 967
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	3 cut(s)	5, 287, 367
AlwI	GGATC	2 cut(s)	217, 630
AlwNI	CAGNNNCTG	2 cut(s)	599, 740
Ama87I	CYCGRG	1 cut(s)	803
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	381, 514
ApoI	RAATTY	4 cut(s)	337, 715, 823, 919
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	4 cut(s)	75, 434, 439, 538
AvaI	CYCGRG	1 cut(s)	803
AvaII	GGWCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	2 cut(s)	393, 526
BccI	CCATC	3 cut(s)	97, 596, 1001
BceAI	ACGGC	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	924
BcoDI	GTCTC	3 cut(s)	5, 287, 367
BfmI	CTRYAG	2 cut(s)	357, 591
BfuI	GTATCC	1 cut(s)	924
BglII	AGATCT	2 cut(s)	50, 974
BisI	GCNGC	2 cut(s)	382, 515
BlsI	GCNGC	2 cut(s)	383, 516
BmcAI	AGTACT	1 cut(s)	755
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	483, 564
BmsI	GCATC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bsc4I	CCNNNNNNNGG	3 cut(s)	572, 767, 842
Bse1I	ACTGG	1 cut(s)	382
BseGI	GGATG	5 cut(s)	89, 347, 709, 879, 951
BseLI	CCNNNNNNNGG	3 cut(s)	572, 767, 842
BseMII	CTCAG	3 cut(s)	282, 629, 801
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	393, 526
BshFI	GGCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	887
BsiHKCI	CYCGRG	1 cut(s)	803
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	572, 767, 842
BsmAI	GTCTC	3 cut(s)	5, 287, 367
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	2 cut(s)	395, 730
BsnI	GGCC	1 cut(s)	457
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp143I	GATC	5 cut(s)	50, 222, 622, 748, 974
BspACI	CCGC	4 cut(s)	438, 489, 512, 762
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	3 cut(s)	283, 628, 800
BspLI	GGNNCC	2 cut(s)	483, 564
BspPI	GGATC	2 cut(s)	217, 630
BspTNI	GGTCTC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	5 cut(s)	50, 222, 622, 748, 974
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	4 cut(s)	122, 169, 174, 247
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	4 cut(s)	291, 403, 615, 787
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	5 cut(s)	89, 347, 709, 879, 951
BstKTI	GATC	5 cut(s)	53, 225, 625, 751, 977
BstMAI	GTCTC	3 cut(s)	5, 287, 367
BstMBI	GATC	5 cut(s)	50, 222, 622, 748, 974
BstMWI	GCNNNNNNNGC	5 cut(s)	390, 399, 459, 680, 700
BstPI	GGTNACC	1 cut(s)	440
BstSFI	CTRYAG	2 cut(s)	357, 591
BstV1I	GCAGC	2 cut(s)	393, 526
BstX2I	RGATCY	3 cut(s)	50, 622, 974
BstYI	RGATCY	3 cut(s)	50, 622, 974
BsuI	GTATCC	1 cut(s)	924
BsuRI	GGCC	1 cut(s)	457
BtsCI	GGATG	5 cut(s)	89, 347, 709, 879, 951
BtsIMutI	CAGTG	3 cut(s)	375, 564, 696
Cac8I	GCNNGC	1 cut(s)	455
CaiI	CAGNNNCTG	2 cut(s)	599, 740
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	5 cut(s)	448, 632, 754, 810, 925
CspCI	CAANNNNNGTGG	2 cut(s)	636, 671
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	5 cut(s)	448, 632, 754, 810, 925
DdeI	CTNAG	4 cut(s)	291, 403, 615, 787
DpnI	GATC	5 cut(s)	52, 224, 624, 750, 976
DpnII	GATC	5 cut(s)	50, 222, 622, 748, 974
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	4 cut(s)	122, 169, 174, 247
EarI	CTCTTC	4 cut(s)	122, 169, 174, 247
Ecl136II	GAGCTC	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	887
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	885
Eco57I	CTGAAG	2 cut(s)	461, 540
Eco88I	CYCGRG	1 cut(s)	803
Eco91I	GGTNACC	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	885
EcoO109I	RGGNCCY	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	440
EcoRI	GAATTC	2 cut(s)	337, 919
EcoT38I	GRGCYC	1 cut(s)	887
FaeI	CATG	1 cut(s)	419
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	1 cut(s)	415
FauI	CCCGC	2 cut(s)	519, 769
FauNDI	CATATG	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	382, 515
FokI	GGATG	5 cut(s)	76, 334, 696, 886, 958
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	2 cut(s)	382, 515
GluI	GCNGC	2 cut(s)	382, 515
HaeIII	GGCC	1 cut(s)	457
Hin1II	CATG	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HinfI	GANTC	5 cut(s)	193, 407, 430, 596, 737
HphI	GGTGA	4 cut(s)	75, 434, 439, 538
Hpy166II	GTNNAC	4 cut(s)	745, 819, 903, 927
Hpy188I	TCNGA	8 cut(s)	198, 367, 496, 601, 736, 790, 918, 1037
Hpy188III	TCNNGA	2 cut(s)	328, 746
Hpy8I	GTNNAC	4 cut(s)	745, 819, 903, 927
HpyAV	CCTTC	5 cut(s)	90, 237, 561, 945, 1034
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	393, 462, 724
HpyF10VI	GCNNNNNNNGC	5 cut(s)	390, 399, 459, 680, 700
HpyF3I	CTNAG	4 cut(s)	291, 403, 615, 787
Hsp92II	CATG	1 cut(s)	419
Kzo9I	GATC	5 cut(s)	50, 222, 622, 748, 974
LmnI	GCTCC	2 cut(s)	198, 882
Lsp1109I	GCAGC	2 cut(s)	393, 526
LweI	GCATC	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	427, 440, 988
MalI	GATC	5 cut(s)	52, 224, 624, 750, 976
MboI	GATC	5 cut(s)	50, 222, 622, 748, 974
MboII	GAAGA	5 cut(s)	109, 156, 161, 234, 546
MflI	RGATCY	3 cut(s)	50, 622, 974
MhlI	GDGCHC	1 cut(s)	887
MluCI	AATT	5 cut(s)	337, 715, 823, 895, 919
MlyI	GAGTC	2 cut(s)	424, 746
MmeI	TCCRAC	4 cut(s)	292, 600, 832, 860
MnlI	CCTC	9 cut(s)	96, 125, 160, 229, 256, 502, 578, 598, 624
MseI	TTAA	2 cut(s)	182, 255
MslI	CAYNNNNRTG	1 cut(s)	689
Mva1269I	GAATGC	2 cut(s)	395, 730
MwoI	GCNNNNNNNGC	5 cut(s)	390, 399, 459, 680, 700
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	5 cut(s)	50, 222, 622, 748, 974
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	2 cut(s)	483, 564
NmuCI	GTSAC	2 cut(s)	427, 440
OliI	CACNNNNGTG	1 cut(s)	689
PctI	GAATGC	2 cut(s)	395, 730
PfeI	GAWTC	3 cut(s)	193, 407, 596
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	2 cut(s)	383, 516
PleI	GAGTC	2 cut(s)	424, 745
PpsI	GAGTC	2 cut(s)	424, 745
PpuMI	RGGWCCY	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	887
Psp5II	RGGWCCY	1 cut(s)	481
PspEI	GGTNACC	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	483, 564
PspPI	GGNCC	1 cut(s)	481
PspPPI	RGGWCCY	1 cut(s)	481
PstNI	CAGNNNCTG	2 cut(s)	599, 740
PsuI	RGATCY	3 cut(s)	50, 622, 974
RsaI	GTAC	5 cut(s)	449, 633, 755, 811, 926
RsaNI	GTAC	5 cut(s)	448, 632, 754, 810, 925
RseI	CAYNNNNRTG	1 cut(s)	689
SacI	GAGCTC	1 cut(s)	887
SaqAI	TTAA	2 cut(s)	182, 255
SatI	GCNGC	2 cut(s)	382, 515
Sau3AI	GATC	5 cut(s)	50, 222, 622, 748, 974
Sau96I	GGNCC	1 cut(s)	481
ScaI	AGTACT	1 cut(s)	755
SchI	GAGTC	2 cut(s)	424, 746
SduI	GDGCHC	1 cut(s)	887
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	2 cut(s)	357, 591
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	337, 715, 823, 895, 919
SsiI	CCGC	4 cut(s)	438, 489, 512, 762
SstI	GAGCTC	1 cut(s)	887
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	221, 248, 665
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	337, 715, 823, 895, 919
TatI	WGTACW	2 cut(s)	447, 753
TfiI	GAWTC	3 cut(s)	193, 407, 596
Tru1I	TTAA	2 cut(s)	182, 255
Tru9I	TTAA	2 cut(s)	182, 255
TscAI	CASTG	3 cut(s)	382, 564, 696
TseFI	GTSAC	2 cut(s)	427, 440
TseI	GCWGC	2 cut(s)	381, 514
Tsp45I	GTSAC	2 cut(s)	427, 440
TspDTI	ATGAA	3 cut(s)	432, 513, 698
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	3 cut(s)	382, 564, 696
Van91I	CCANNNNNTGG	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	4 cut(s)	337, 715, 823, 919
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.