Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Reverse (-)

19947515 .. 19948345

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1096000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAGGGACCTTCAAAAAACTCGTGGTACAGAACTGATTTCATTTATCTTATCTTTTGCAGTACTGGTGAAAGAAACAAAACAAATTAAAAGAACCGAAAAAATGGCCTTGCAGCAATACTTTGCACACGAATGCAGATCCGTATCGGGGGCAACAACAGATTCAGAAACTTCCAAAGGTGGGTTTGACTGCAACATCTGCTTAGAATTTGCGCACGAGCCAGTGGTCACCTTCTGCGGCCATCTATTTTGCTGGCCTTGCATCTACAAATGGCTTCACGTTCAGAGTGCCTCCCTTGCCTCCGATGAGTGCCCTCAGTGCCCTGTTTGCAAAGCTGATATATCGCACACCACCATGGTCCCACTTTACGGCCGGGGCCAAACAACTTCCGAACCTGAGCATGAAGGAAAGATGACACTCTACAGGGGAATGGTAATACCGCCCAGACCATCAGCATGTGATGTGCAAGCTCTCATATCTAGCACCTCTCAGACCGTCCAGCAACTTCCATATCGTAACCCTTATCAGAACCAACAATATGACCCTCAATCATACGGCAGTTTTGGAGAACATCCTTCCTCTTCACTCCTTGACCTCGGAGGCACTGCAATGGCAGGTGTCCACCATCCGGCGGTTGGGGTATTTGGAGAAATGGTTTATGCAAGGGTGTTCGGAAACTCAGAGAGCGTATATGCGTACCCGAATTCTTATCACCGAACGGGAAGTAGTAGTCCAAGGCTGAGGAGGCAGGAGATGCAGGCAGACAAGTCACTAAACAGAATATCTATTTTCTTCTTCTGTTGCTTACTTTTGTGCCTTCTTGTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

277

Amino Acids

30.87

Weight (kDa)

7.1

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	63 - 110	2.2e-06	Ring finger domain
RING_XB3-XBAT31	PF24921	64 - 115	6.1e-08	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4	PF00097	64 - 110	6.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	64 - 108	1e-07	RING-type zinc-finger
zf-C3HC4_2	PF13923	64 - 107	2.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	605
Acc16I	TGCGCA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	605
AciI	CCGC	3 cut(s)	237, 440, 632
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	2 cut(s)	238, 370
AcsI	RAATTY	2 cut(s)	206, 703
AfaI	GTAC	3 cut(s)	28, 63, 698
AfiI	CCNNNNNNNGG	6 cut(s)	147, 180, 368, 628, 631, 635
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	2 cut(s)	335, 470
AluI	AGCT	2 cut(s)	335, 470
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	5 cut(s)	105, 238, 254, 370, 376
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	2 cut(s)	206, 703
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	7, 358, 376
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	79, 220, 704
AvaII	GGWCC	2 cut(s)	7, 358
BaeGI	GKGCMC	2 cut(s)	314, 323
BauI	CACGAG	2 cut(s)	21, 215
BbsI	GAAGAC	1 cut(s)	817
BbvCI	CCTCAGC	1 cut(s)	740
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	249, 457, 633
BceAI	ACGGC	2 cut(s)	385, 571
BcnI	CCSGG	1 cut(s)	374
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	421
BfuAI	ACCTGC	1 cut(s)	605
BisI	GCNGC	2 cut(s)	113, 238
BlsI	GCNGC	2 cut(s)	114, 239
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	7, 358
BmgT120I	GGNCC	3 cut(s)	7, 358, 376
BmiI	GGNNCC	3 cut(s)	8, 360, 377
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	270, 744
BpiI	GAAGAC	1 cut(s)	817
Bpu10I	CCTNAGC	2 cut(s)	396, 740
BpuMI	CCSGG	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	142
BsaJI	CCNNGG	4 cut(s)	354, 373, 595, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	6 cut(s)	147, 180, 368, 628, 631, 635
Bse1I	ACTGG	2 cut(s)	69, 221
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	142
BseDI	CCNNGG	4 cut(s)	354, 373, 595, 734
BseGI	GGATG	2 cut(s)	571, 625
BseJI	GATNNNNATC	1 cut(s)	142
BseLI	CCNNNNNNNGG	6 cut(s)	147, 180, 368, 628, 631, 635
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	5 cut(s)	329, 387, 503, 693, 731
BseNI	ACTGG	2 cut(s)	69, 221
BseRI	GAGGAG	1 cut(s)	757
BseSI	GKGCMC	2 cut(s)	314, 323
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	5 cut(s)	107, 240, 256, 372, 378
BsiEI	CGRYCG	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	373, 629
BslFI	GGGAC	2 cut(s)	20, 344
BslI	CCNNNNNNNGG	6 cut(s)	147, 180, 368, 628, 631, 635
BsmFI	GGGAC	2 cut(s)	20, 344
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	5 cut(s)	107, 240, 256, 372, 378
Bsp1286I	GDGCHC	2 cut(s)	314, 323
Bsp143I	GATC	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	3 cut(s)	237, 440, 632
BspANI	GGCC	5 cut(s)	107, 240, 256, 372, 378
BspCNI	CTCAG	5 cut(s)	328, 388, 502, 692, 732
BspLI	GGNNCC	3 cut(s)	8, 360, 377
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	69, 221
BssECI	CCNNGG	4 cut(s)	354, 373, 595, 734
BssMI	GATC	1 cut(s)	137
BssSI	CACGAG	2 cut(s)	21, 215
BssT1I	CCWWGG	2 cut(s)	354, 734
Bst2BI	CACGAG	2 cut(s)	21, 215
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	586
BstAPI	GCANNNNNTGC	2 cut(s)	198, 754
BstC8I	GCNNGC	3 cut(s)	254, 468, 759
BstDEI	CTNAG	6 cut(s)	202, 315, 396, 489, 679, 740
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	571, 625
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	7 cut(s)	198, 258, 296, 318, 327, 745, 754
BstNSI	RCATGY	1 cut(s)	459
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	421
BstSLI	GKGCMC	2 cut(s)	314, 323
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	817
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BstZI	CGGCCG	1 cut(s)	370
BsuRI	GGCC	5 cut(s)	107, 240, 256, 372, 378
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	571, 625
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	228, 323, 603
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	254, 468, 759
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	7, 358, 376
Csp6I	GTAC	3 cut(s)	27, 62, 697
CviAII	CATG	3 cut(s)	355, 401, 456
CviQI	GTAC	3 cut(s)	27, 62, 697
DdeI	CTNAG	6 cut(s)	202, 315, 396, 489, 679, 740
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	238, 370
EagI	CGGCCG	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
EclXI	CGGCCG	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	354, 734
Eco47I	GGWCC	2 cut(s)	7, 358
Eco52I	CGGCCG	1 cut(s)	370
Eco91I	GGTNACC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	354, 734
ErhI	CCWWGG	2 cut(s)	354, 734
FaeI	CATG	3 cut(s)	358, 404, 459
FaqI	GGGAC	2 cut(s)	20, 344
FatI	CATG	3 cut(s)	354, 400, 455
Fnu4HI	GCNGC	2 cut(s)	113, 238
FokI	GGATG	2 cut(s)	558, 612
Fsp4HI	GCNGC	2 cut(s)	113, 238
FspBI	CTAG	1 cut(s)	480
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	2 cut(s)	113, 238
HaeIII	GGCC	5 cut(s)	107, 240, 256, 372, 378
HapII	CCGG	2 cut(s)	373, 629
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	3 cut(s)	358, 404, 459
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	373, 629
HphI	GGTGA	3 cut(s)	79, 220, 704
Hpy166II	GTNNAC	1 cut(s)	622
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	5 cut(s)	20, 241, 398, 585, 827
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	7 cut(s)	198, 258, 296, 318, 327, 745, 754
HpyF3I	CTNAG	6 cut(s)	202, 315, 396, 489, 679, 740
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	358, 404, 459
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	137
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	270, 744
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	226, 515, 768
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	4 cut(s)	573, 784, 787, 817
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	314, 323
MluCI	AATT	3 cut(s)	84, 206, 703
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	4 cut(s)	130, 353, 454, 608
MspI	CCGG	2 cut(s)	373, 629
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	7 cut(s)	198, 258, 296, 318, 327, 745, 754
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	358, 404, 459
NlaIV	GGNNCC	3 cut(s)	8, 360, 377
NmuCI	GTSAC	2 cut(s)	226, 768
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	1 cut(s)	459
PaqCI	CACCTGC	1 cut(s)	605
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	114, 239
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspEI	GGTNACC	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	8, 360, 377
PspPI	GGNCC	3 cut(s)	7, 358, 376
PspPPI	RGGWCCY	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	3 cut(s)	28, 63, 698
RsaNI	GTAC	3 cut(s)	27, 62, 697
RseI	CAYNNNNRTG	4 cut(s)	130, 353, 454, 608
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	113, 238
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	3 cut(s)	7, 358, 376
ScaI	AGTACT	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	314, 323
SfaNI	GCATC	2 cut(s)	270, 744
SfcI	CTRYAG	1 cut(s)	421
SinI	GGWCC	2 cut(s)	7, 358
SmiMI	CAYNNNNRTG	4 cut(s)	130, 353, 454, 608
Sse9I	AATT	3 cut(s)	84, 206, 703
SsiI	CCGC	3 cut(s)	237, 440, 632
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	354, 734
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	282
TasI	AATT	3 cut(s)	84, 206, 703
TatI	WGTACW	1 cut(s)	61
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	3 cut(s)	228, 323, 610
TseFI	GTSAC	2 cut(s)	226, 768
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	2 cut(s)	226, 768
TspDTI	ATGAA	2 cut(s)	30, 417
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	3 cut(s)	228, 323, 610
VpaK11BI	GGWCC	2 cut(s)	7, 358
XapI	RAATTY	2 cut(s)	206, 703
XceI	RCATGY	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.