Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Forward (+)

29670498 .. 29671226

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGTTGCAGCAATACTTTGCACACGAATGCAAATCCATCGCCGGAGAAACAACAGAATCAGAAAATTCCAAAGGTGGCTTTGACTGCAACATCTGCTTAGACTTTGCACACGAGCCAGTGGTCACCTTCTGTGGCCATCTATATTGCTGGCCTTGCATTTACAAATGGCTTCACGTTCAGAGTGCGTCCCTTGCCTCCGATGAGTGCCCTCAGTGCCCTGTTTGCAAGGCTGATATATCACACACTACCATGGTCCCACTTTATGGCCGGGGCCAAGCAACTTCTGAACCTGAGTTTGAAGGAACGGTAGCACTCTACGGGGGAATGGTAATACCTCCCAGACCATCAGCATTCGATGCACAAGCTCTCATATCTAGCACCTCTCAGACGGTCCAGCAACTTCCGTATCGTAACCCTTATCAGAATCAACAATATAACCCTCATTCATACAGCAGTTTAGGGGAACATTCTTCCTCGCCGCTGCTTGACCTCAGAGGCACTGCAGTGGCAGGTATCCACCATCCGGCGGTTGGGGTGTTTGGGGAAATGGTTTATTCAAGGGTGTTCGGAAACTCGCAGAGCGTATATGGGTATCCAAATTCGTATCACCTAACTGGAAGTAGTACTCCGAGGCTGAGGAGGCACGAGATGCAGGCAGACAAGTCACTAAACAGAATATCTATTTTCCTCTTCTGTTGCTTGCTTTTGTGCCTTCTTGTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

243

Amino Acids

26.77

Weight (kDa)

6.09

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	29 - 76	4.9e-06	Ring finger domain
zf-C3HC4	PF00097	30 - 76	1e-07	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	30 - 81	3.8e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4_2	PF13923	30 - 73	4.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	30 - 59	8.4e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	266
AciI	CCGC	2 cut(s)	482, 530
AcoI	YGGCCR	2 cut(s)	136, 268
AcsI	RAATTY	2 cut(s)	67, 601
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	4 cut(s)	266, 526, 529, 533
AgsI	TTSAA	2 cut(s)	302, 561
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
AoxI	GGCC	4 cut(s)	136, 152, 268, 274
ApeKI	GCWGC	2 cut(s)	10, 484
ApoI	RAATTY	2 cut(s)	67, 601
AspS9I	GGNCC	3 cut(s)	256, 274, 394
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	118, 602
AvaII	GGWCC	2 cut(s)	256, 394
BaeGI	GKGCMC	2 cut(s)	212, 221
BaeI	ACNNNNGTAYC	2 cut(s)	392, 425
BalI	TGGCCA	1 cut(s)	138
BauI	CACGAG	2 cut(s)	113, 647
BbsI	GAAGAC	1 cut(s)	715
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	2 cut(s)	22, 471
BccI	CCATC	4 cut(s)	47, 147, 355, 531
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciVI	GTATCC	2 cut(s)	527, 606
BcnI	CCSGG	1 cut(s)	272
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	503
BfuI	GTATCC	2 cut(s)	527, 606
BisI	GCNGC	3 cut(s)	11, 482, 485
BlsI	GCNGC	3 cut(s)	12, 483, 486
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	256, 394
BmgT120I	GGNCC	3 cut(s)	256, 274, 394
BmiI	GGNNCC	2 cut(s)	258, 275
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	349, 642
BpiI	GAAGAC	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	252, 271, 632
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 526, 529, 533
Bse1I	ACTGG	2 cut(s)	119, 622
BseDI	CCNNGG	3 cut(s)	252, 271, 632
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	4 cut(s)	266, 526, 529, 533
BseMII	CTCAG	5 cut(s)	227, 285, 401, 508, 629
BseNI	ACTGG	2 cut(s)	119, 622
BseRI	GAGGAG	1 cut(s)	655
BseSI	GKGCMC	2 cut(s)	212, 221
BseXI	GCAGC	2 cut(s)	22, 471
BshFI	GGCC	4 cut(s)	138, 154, 270, 276
BsiSI	CCGG	3 cut(s)	45, 271, 527
BslFI	GGGAC	2 cut(s)	175, 242
BslI	CCNNNNNNNGG	4 cut(s)	266, 526, 529, 533
BsmFI	GGGAC	2 cut(s)	175, 242
BsmI	GAATGC	2 cut(s)	35, 353
BsnI	GGCC	4 cut(s)	138, 154, 270, 276
Bsp1286I	GDGCHC	2 cut(s)	212, 221
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	2 cut(s)	482, 530
BspANI	GGCC	4 cut(s)	138, 154, 270, 276
BspCNI	CTCAG	5 cut(s)	226, 286, 400, 507, 630
BspLI	GGNNCC	2 cut(s)	258, 275
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	119, 622
BssECI	CCNNGG	3 cut(s)	252, 271, 632
BssSI	CACGAG	2 cut(s)	113, 647
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	2 cut(s)	113, 647
Bst4CI	ACNGT	2 cut(s)	310, 394
Bst6I	CTCTTC	1 cut(s)	698
BstAPI	GCANNNNNTGC	3 cut(s)	96, 359, 652
BstC8I	GCNNGC	3 cut(s)	152, 657, 704
BstDEI	CTNAG	6 cut(s)	100, 213, 294, 387, 494, 638
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 96, 156, 194, 216, 225, 359, 643, 652
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	2 cut(s)	212, 221
BstV1I	GCAGC	2 cut(s)	22, 471
BstV2I	GAAGAC	1 cut(s)	715
BsuI	GTATCC	2 cut(s)	527, 606
BsuRI	GGCC	4 cut(s)	138, 154, 270, 276
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	2 cut(s)	501, 513
BtsIMutI	CAGTG	4 cut(s)	126, 221, 501, 513
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	3 cut(s)	152, 657, 704
Cfr13I	GGNCC	3 cut(s)	256, 274, 394
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	6 cut(s)	100, 213, 294, 387, 494, 638
EaeI	YGGCCR	2 cut(s)	136, 268
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	256, 394
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	9 cut(s)	145, 239, 254, 267, 374, 438, 451, 589, 591
FaqI	GGGAC	2 cut(s)	175, 242
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	11, 482, 485
FokI	GGATG	1 cut(s)	510
Fsp4HI	GCNGC	3 cut(s)	11, 482, 485
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	3 cut(s)	11, 482, 485
HaeIII	GGCC	4 cut(s)	138, 154, 270, 276
HapII	CCGG	3 cut(s)	45, 271, 527
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	59, 427
HpaII	CCGG	3 cut(s)	45, 271, 527
HphI	GGTGA	2 cut(s)	118, 602
HpyAV	CCTTC	3 cut(s)	139, 296, 725
HpyCH4III	ACNGT	2 cut(s)	310, 394
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 96, 156, 194, 216, 225, 359, 643, 652
HpyF3I	CTNAG	6 cut(s)	100, 213, 294, 387, 494, 638
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	22, 471
LweI	GCATC	2 cut(s)	349, 642
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	124, 413, 666
MboII	GAAGA	3 cut(s)	465, 685, 715
MhlI	GDGCHC	2 cut(s)	212, 221
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	2 cut(s)	67, 601
MluNI	TGGCCA	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MslI	CAYNNNNRTG	3 cut(s)	28, 251, 506
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	3 cut(s)	45, 271, 527
MspR9I	CCNGG	1 cut(s)	272
Mva1269I	GAATGC	2 cut(s)	35, 353
MwoI	GCNNNNNNNGC	9 cut(s)	87, 96, 156, 194, 216, 225, 359, 643, 652
NciI	CCSGG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	252
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	258, 275
NmuCI	GTSAC	2 cut(s)	124, 666
OliI	CACNNNNGTG	1 cut(s)	506
PctI	GAATGC	2 cut(s)	35, 353
PfeI	GAWTC	2 cut(s)	59, 427
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	12, 483, 486
PspEI	GGTNACC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	258, 275
PspPI	GGNCC	3 cut(s)	256, 274, 394
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	3 cut(s)	28, 251, 506
SatI	GCNGC	3 cut(s)	11, 482, 485
Sau96I	GGNCC	3 cut(s)	256, 274, 394
ScaI	AGTACT	1 cut(s)	628
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	212, 221
SfaNI	GCATC	2 cut(s)	349, 642
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	256, 394
SmiMI	CAYNNNNRTG	3 cut(s)	28, 251, 506
Sse9I	AATT	2 cut(s)	67, 601
SsiI	CCGC	2 cut(s)	482, 530
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	310, 394
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	67, 601
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	2 cut(s)	59, 427
TscAI	CASTG	4 cut(s)	126, 221, 508, 513
TseFI	GTSAC	2 cut(s)	124, 666
TseI	GCWGC	2 cut(s)	10, 484
Tsp45I	GTSAC	2 cut(s)	124, 666
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	4 cut(s)	126, 221, 508, 513
Van91I	CCANNNNNTGG	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	256, 394
XapI	RAATTY	2 cut(s)	67, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.