Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Forward (+)

24785671 .. 24788664

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCATGTAAGTGTGTATCATGTTGTGCTCGGAATACATACAAAAATTCGTCCAAGCAAACAGAGAAAATAAAAGAGGGAATAAATCCATTCATACGTGGATTGAAGACTTGCATGACATTTGAGCCCCAAAACAACATTACACCAAAATACAATACTCAAAGATCTCTTTCTTGTTTTGTATTTATACAACCTACACCTCAACCCTTTCGCTCTCAACCATTTCACCTCTCCTCTCTGTCGCCAACAATCAAACCCACCACCTCTCTCTCTCTCCTCTGTTTCGTAACCTGTAAGATTCGGAGCTTGTTTTTGATTGCCACCTCGATCCCTTCCAGCTTTTTCTCTTCCTCGATGCAACATATCGCTATGGAACAGAACTTTTATGAGCCTGAGACACACTTTGTTTCAGTTGGAGATGTTTCTGTCAAGAAGTGGAATTCAGTCTCATCCCCAACTACAGTCTCGGACAACGACACTGGCTGCTTTGAATGCAACATATGCTTAGATTCAGCACATGAACCTGTGGTGACTCTCTGCGGCCACCTGTACTGCTGGCCGTGCATTTACAAGTGGCTTCAGGTACCAACTGCCTCTGATGAACAATCCCACCTGCAGCAAACTTGTCCTGTCTGTAAGGCTAACATCACCCCTTCTTCAGTGGTTCCCCTCTACGGTCGGGGCTTATCCTCTTCAGATTCTGACGGAAAGAAATCTCAGTTGGATCTGGTCGTACCACGTAGACCCCCACCGATTACTGCTACTACCGCCACATCAGTGCCAAGACAGCAACTTCATCCAAATTTTTTGCAAAGGCATTCAGAGTCTGTTCACGATCAGTACTATCCCGCTTATGGTGGTTATGCTACAAACTCAGATTCAGCTTATCTCGGGGGTACAACGATGACAAATTTATCCAATCCAACGATTGGAATGGTTGGAGAGTTTGTGTTTGCAAGGATGTTTGGGAACTCAAACACTAATTTGTTTACTTACCCGTATCCGAATTCGTACACCCCAAGTAGTCTTAGGATGAGAAGGCAGGAAGTAGAGCTGGACAAATCTCTCAATAGAGTAACCATCTTTCTTTTCTGCTGTTTTATGCTGTGCCTTCTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

375

Amino Acids

41.87

Weight (kDa)

8.55

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	621
Acc65I	GGTACC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	583
AccB7I	CCANNNNNTGG	1 cut(s)	929
AccI	GTMKAC	1 cut(s)	742
AciI	CCGC	3 cut(s)	540, 768, 849
AclWI	GGATC	2 cut(s)	322, 732
AcoI	YGGCCR	2 cut(s)	541, 557
AcsI	RAATTY	5 cut(s)	46, 439, 802, 910, 1006
AcuI	CTGAAG	3 cut(s)	563, 642, 678
AfaI	GTAC	6 cut(s)	551, 585, 735, 842, 898, 1013
AfiI	CCNNNNNNNGG	3 cut(s)	674, 854, 929
AgsI	TTSAA	2 cut(s)	106, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AleI	CACNNNNGTG	1 cut(s)	776
AluBI	AGCT	4 cut(s)	306, 339, 884, 1054
AluI	AGCT	4 cut(s)	306, 339, 884, 1054
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	3 cut(s)	389, 451, 469
AlwI	GGATC	2 cut(s)	322, 732
AlwNI	CAGNNNCTG	2 cut(s)	701, 827
Ama87I	CYCGRG	1 cut(s)	890
AoxI	GGCC	2 cut(s)	541, 557
ApeKI	GCWGC	2 cut(s)	483, 616
ApoI	RAATTY	5 cut(s)	46, 439, 802, 910, 1006
Asp718I	GGTACC	1 cut(s)	583
AsuHPI	GGTGA	3 cut(s)	218, 541, 640
AvaI	CYCGRG	1 cut(s)	890
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	470, 628
BccI	CCATC	1 cut(s)	1088
BceAI	ACGGC	1 cut(s)	544
BciVI	GTATCC	1 cut(s)	1011
BcoDI	GTCTC	3 cut(s)	389, 451, 469
BfmI	CTRYAG	2 cut(s)	459, 614
BfuAI	ACCTGC	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	1011
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	3 cut(s)	484, 541, 617
BlsI	GCNGC	3 cut(s)	485, 542, 618
BmcAI	AGTACT	1 cut(s)	842
BmeT110I	CYCGRG	1 cut(s)	890
BmiI	GGNNCC	2 cut(s)	585, 666
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	113
BsaAI	YACGTR	2 cut(s)	98, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	674, 854, 929
Bse1I	ACTGG	1 cut(s)	484
BseGI	GGATG	4 cut(s)	449, 796, 966, 1038
BseLI	CCNNNNNNNGG	3 cut(s)	674, 854, 929
BseMII	CTCAG	3 cut(s)	384, 731, 888
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	2 cut(s)	223, 266
BseXI	GCAGC	2 cut(s)	470, 628
Bsh1285I	CGRYCG	1 cut(s)	679
BshFI	GGCC	2 cut(s)	543, 559
BshNI	GGYRCC	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	890
BslI	CCNNNNNNNGG	3 cut(s)	674, 854, 929
BsmAI	GTCTC	3 cut(s)	389, 451, 469
BsmI	GAATGC	2 cut(s)	497, 817
BsnI	GGCC	2 cut(s)	543, 559
BsoBI	CYCGRG	1 cut(s)	890
Bsp1286I	GDGCHC	2 cut(s)	31, 129
Bsp143I	GATC	4 cut(s)	164, 327, 724, 835
BspACI	CCGC	3 cut(s)	540, 768, 849
BspANI	GGCC	2 cut(s)	543, 559
BspCNI	CTCAG	3 cut(s)	385, 730, 887
BspLI	GGNNCC	2 cut(s)	585, 666
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	621
BspPI	GGATC	2 cut(s)	322, 732
BspT107I	GGYRCC	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	4 cut(s)	164, 327, 724, 835
Bst4CI	ACNGT	2 cut(s)	463, 677
Bst6I	CTCTTC	2 cut(s)	352, 697
BstAPI	GCANNNNNTGC	1 cut(s)	501
BstBAI	YACGTR	2 cut(s)	98, 740
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	5 cut(s)	393, 505, 717, 874, 1028
BstF5I	GGATG	4 cut(s)	449, 796, 966, 1038
BstKTI	GATC	4 cut(s)	167, 330, 727, 838
BstMAI	GTCTC	3 cut(s)	389, 451, 469
BstMBI	GATC	4 cut(s)	164, 327, 724, 835
BstMCI	CGRYCG	1 cut(s)	679
BstMWI	GCNNNNNNNGC	5 cut(s)	492, 501, 561, 767, 787
BstSFI	CTRYAG	2 cut(s)	459, 614
BstV1I	GCAGC	2 cut(s)	470, 628
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	2 cut(s)	164, 724
BstYI	RGATCY	2 cut(s)	164, 724
BsuI	GTATCC	1 cut(s)	1011
BsuRI	GGCC	2 cut(s)	543, 559
BtsCI	GGATG	4 cut(s)	449, 796, 966, 1038
BtsIMutI	CAGTG	3 cut(s)	477, 666, 783
BveI	ACCTGC	1 cut(s)	621
Cac8I	GCNNGC	1 cut(s)	557
CaiI	CAGNNNCTG	2 cut(s)	701, 827
Csp6I	GTAC	6 cut(s)	550, 584, 734, 841, 897, 1012
CviAII	CATG	4 cut(s)	6, 21, 115, 518
CviQI	GTAC	6 cut(s)	550, 584, 734, 841, 897, 1012
DdeI	CTNAG	5 cut(s)	393, 505, 717, 874, 1028
DpnI	GATC	4 cut(s)	166, 329, 726, 837
DpnII	GATC	4 cut(s)	164, 327, 724, 835
EaeI	YGGCCR	2 cut(s)	541, 557
Eam1104I	CTCTTC	2 cut(s)	352, 697
EarI	CTCTTC	2 cut(s)	352, 697
Eco24I	GRGCYC	1 cut(s)	129
Eco57I	CTGAAG	3 cut(s)	563, 642, 678
Eco88I	CYCGRG	1 cut(s)	890
EcoRI	GAATTC	2 cut(s)	439, 1006
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	4 cut(s)	9, 24, 118, 521
FatI	CATG	4 cut(s)	5, 20, 114, 517
FauI	CCCGC	1 cut(s)	856
FauNDI	CATATG	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	484, 541, 617
FokI	GGATG	4 cut(s)	436, 783, 973, 1045
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	484, 541, 617
GluI	GCNGC	3 cut(s)	484, 541, 617
HaeIII	GGCC	2 cut(s)	543, 559
Hin1II	CATG	4 cut(s)	9, 24, 118, 521
HinfI	GANTC	6 cut(s)	298, 509, 532, 698, 824, 878
HphI	GGTGA	3 cut(s)	218, 541, 640
Hpy166II	GTNNAC	4 cut(s)	743, 832, 990, 1014
Hpy188III	TCNNGA	2 cut(s)	430, 833
Hpy8I	GTNNAC	4 cut(s)	743, 832, 990, 1014
HpyAV	CCTTC	4 cut(s)	342, 663, 1032, 1121
HpyCH4III	ACNGT	2 cut(s)	463, 677
HpyCH4IV	ACGT	2 cut(s)	97, 739
HpyCH4V	TGCA	7 cut(s)	114, 358, 495, 564, 616, 811, 956
HpyF10VI	GCNNNNNNNGC	5 cut(s)	492, 501, 561, 767, 787
HpyF3I	CTNAG	5 cut(s)	393, 505, 717, 874, 1028
HpySE526I	ACGT	2 cut(s)	97, 739
Hsp92II	CATG	4 cut(s)	9, 24, 118, 521
KpnI	GGTACC	1 cut(s)	587
Kzo9I	GATC	4 cut(s)	164, 327, 724, 835
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	2 cut(s)	470, 628
LweI	GCATC	1 cut(s)	345
MaeII	ACGT	2 cut(s)	97, 739
MaeIII	GTNAC	3 cut(s)	286, 529, 1075
MalI	GATC	4 cut(s)	166, 329, 726, 837
MboI	GATC	4 cut(s)	164, 327, 724, 835
MboII	GAAGA	4 cut(s)	118, 339, 648, 684
MflI	RGATCY	2 cut(s)	164, 724
MhlI	GDGCHC	2 cut(s)	31, 129
MluCI	AATT	6 cut(s)	46, 439, 802, 910, 982, 1006
MlyI	GAGTC	2 cut(s)	526, 833
MmeI	TCCRAC	4 cut(s)	394, 702, 919, 947
MslI	CAYNNNNRTG	2 cut(s)	10, 776
Mva1269I	GAATGC	2 cut(s)	497, 817
MwoI	GCNNNNNNNGC	5 cut(s)	492, 501, 561, 767, 787
NdeI	CATATG	1 cut(s)	500
NdeII	GATC	4 cut(s)	164, 327, 724, 835
NlaIII	CATG	4 cut(s)	9, 24, 118, 521
NlaIV	GGNNCC	2 cut(s)	585, 666
NmuCI	GTSAC	1 cut(s)	529
OliI	CACNNNNGTG	1 cut(s)	776
PaqCI	CACCTGC	1 cut(s)	621
PctI	GAATGC	2 cut(s)	497, 817
PfeI	GAWTC	4 cut(s)	298, 509, 698, 878
PflMI	CCANNNNNTGG	1 cut(s)	929
PkrI	GCNGC	3 cut(s)	485, 542, 618
PleI	GAGTC	2 cut(s)	526, 832
PpsI	GAGTC	2 cut(s)	526, 832
Ppu21I	YACGTR	2 cut(s)	98, 740
PspN4I	GGNNCC	2 cut(s)	585, 666
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	2 cut(s)	701, 827
PsuI	RGATCY	2 cut(s)	164, 724
RsaI	GTAC	6 cut(s)	551, 585, 735, 842, 898, 1013
RsaNI	GTAC	6 cut(s)	550, 584, 734, 841, 897, 1012
RseI	CAYNNNNRTG	2 cut(s)	10, 776
SatI	GCNGC	3 cut(s)	484, 541, 617
Sau3AI	GATC	4 cut(s)	164, 327, 724, 835
ScaI	AGTACT	1 cut(s)	842
SchI	GAGTC	2 cut(s)	526, 833
SduI	GDGCHC	2 cut(s)	31, 129
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	2 cut(s)	459, 614
SmiMI	CAYNNNNRTG	2 cut(s)	10, 776
Sse9I	AATT	6 cut(s)	46, 439, 802, 910, 982, 1006
SsiI	CCGC	3 cut(s)	540, 768, 849
TaaI	ACNGT	2 cut(s)	463, 677
TaiI	ACGT	2 cut(s)	100, 742
TaqI	TCGA	2 cut(s)	326, 353
TasI	AATT	6 cut(s)	46, 439, 802, 910, 982, 1006
TatI	WGTACW	2 cut(s)	549, 840
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	4 cut(s)	298, 509, 698, 878
TscAI	CASTG	3 cut(s)	484, 666, 783
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	483, 616
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	4 cut(s)	82, 534, 615, 785
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	3 cut(s)	484, 666, 783
Van91I	CCANNNNNTGG	1 cut(s)	929
XapI	RAATTY	5 cut(s)	46, 439, 802, 910, 1006
XmiI	GTMKAC	1 cut(s)	742
ZrmI	AGTACT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.