Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Forward (+)

5453169 .. 5455872

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAAATGAAGCAATACTATGCACATGAATGGAAGTCCATCTCAGGTGCAGCAGCTGATTCCGATAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTTAGACTTTGCAAATGAGCCTGTGGTCACTCTCTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCGCGTCCAGAGCGCCTCCCTTGCTTCTGATGAATGCCCCCAGTGCCCTGTTTGCAAGACTGAGATATCACACACCACCATGGTCCCACTCTATGGCCGTGGTGGCCAAACAACGTCAGAACCTGAGCTTAAAGGAAAGGCACCCTCCCTGGGAATAATAGTACCTCCCAGACCATCAGCATGGGATGCACAAGCTCTTGTATCTAACTCACCTCGTGATGTTCAGCAACTTCCATATCGTAACCCATATCAGAGCCAACAATACAGCTCTCATCCCTACAGCAGTTATGAGGAACATTCTTCCTCACCACTGCTTAGCCCTGGAGGCACAACGTTATCTGGTATCAACCACCCAATGGCTGGTCTGTTTGGGGAGATGGTTTACGCAAGGGTGTTTGGAAATTCTGAGAGCTTATACGCCTACCCAAATTCGTACCACCTTACAGGCAGTAGTAGTCCAAGGATGAGAAGGCACGAGATGCAGGCAGAAAAGTCGCTAAATAGAATTTCTATCTTCCTCTTCTGTTGCTTTCTTTTGTGCCTTATCGTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

243

Amino Acids

26.91

Weight (kDa)

6.43

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	30 - 77	7.7e-08	Ring finger domain
zf-C3HC4_3	PF13920	30 - 83	8.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	30 - 78	1e-05	zinc-RING finger domain
zf-C3HC4	PF00097	31 - 77	1.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	31 - 74	9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	31 - 59	2.5e-08	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	31 - 82	3.1e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4_4	PF15227	31 - 74	5.3e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AccB7I	CCANNNNNTGG	3 cut(s)	266, 529, 533
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	78
AclI	AACGTT	1 cut(s)	506
AcoI	YGGCCR	3 cut(s)	136, 268, 277
AcsI	RAATTY	3 cut(s)	574, 601, 678
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	146, 336, 608
AfiI	CCNNNNNNNGG	4 cut(s)	266, 323, 529, 533
AjnI	CCWGG	2 cut(s)	321, 493
AluBI	AGCT	5 cut(s)	56, 301, 368, 441, 585
AluI	AGCT	5 cut(s)	56, 301, 368, 441, 585
AlwNI	CAGNNNCTG	2 cut(s)	56, 296
AoxI	GGCC	4 cut(s)	136, 152, 268, 277
ApeKI	GCWGC	2 cut(s)	50, 53
ApoI	RAATTY	3 cut(s)	574, 601, 678
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	375, 471
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	221
BalI	TGGCCA	2 cut(s)	138, 279
BanI	GGYRCC	1 cut(s)	313
BauI	CACGAG	2 cut(s)	387, 647
BbvI	GCAGC	2 cut(s)	62, 65
BccI	CCATC	4 cut(s)	47, 147, 355, 544
BceAI	ACGGC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	648, 682
BciT130I	CCWGG	2 cut(s)	323, 495
BfmI	CTRYAG	1 cut(s)	451
BfoI	RGCGCY	1 cut(s)	189
BglI	GCCNNNNNGGC	2 cut(s)	276, 498
BisI	GCNGC	3 cut(s)	51, 54, 79
BlpI	GCTNAGC	1 cut(s)	488
BlsI	GCNGC	3 cut(s)	52, 55, 80
Bme1390I	CCNGG	2 cut(s)	323, 495
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	258, 315
BmrFI	CCNGG	2 cut(s)	323, 495
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	168, 349, 642
BmuI	ACTGGG	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	488
BsaJI	CCNNGG	6 cut(s)	252, 271, 321, 322, 493, 632
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 323, 529, 533
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	323, 495
BseDI	CCNNGG	6 cut(s)	252, 271, 321, 322, 493, 632
BseGI	GGATG	3 cut(s)	364, 445, 642
BseLI	CCNNNNNNNGG	4 cut(s)	266, 323, 529, 533
BseMII	CTCAG	4 cut(s)	57, 225, 288, 570
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	62, 65
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	138, 154, 270, 279
BshNI	GGYRCC	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	266, 323, 529, 533
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	138, 154, 270, 279
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp1720I	GCTNAGC	1 cut(s)	488
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	138, 154, 270, 279
BspCNI	CTCAG	4 cut(s)	56, 226, 289, 571
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	258, 315
BspT107I	GGYRCC	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	6 cut(s)	252, 271, 321, 322, 493, 632
BssSI	CACGAG	2 cut(s)	387, 647
BssT1I	CCWWGG	2 cut(s)	252, 632
Bst2BI	CACGAG	2 cut(s)	387, 647
Bst2UI	CCWGG	2 cut(s)	323, 495
Bst6I	CTCTTC	1 cut(s)	698
BstAPI	GCANNNNNTGC	3 cut(s)	96, 359, 652
BstC8I	GCNNGC	2 cut(s)	152, 657
BstDEI	CTNAG	6 cut(s)	43, 100, 234, 297, 488, 579
BstDSI	CCRYGG	2 cut(s)	252, 271
BstF5I	GGATG	3 cut(s)	364, 445, 642
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstNI	CCWGG	2 cut(s)	323, 495
BstSCI	CCNGG	2 cut(s)	321, 493
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	62, 65
BstXI	CCANNNNNNTGG	1 cut(s)	354
BsuRI	GGCC	4 cut(s)	138, 154, 270, 279
BtgI	CCRYGG	2 cut(s)	252, 271
BtsCI	GGATG	3 cut(s)	364, 445, 642
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	221, 482
Cac8I	GCNNGC	2 cut(s)	152, 657
CaiI	CAGNNNCTG	2 cut(s)	56, 296
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	145, 335, 607
CviAII	CATG	3 cut(s)	26, 253, 354
CviQI	GTAC	3 cut(s)	145, 335, 607
DdeI	CTNAG	6 cut(s)	43, 100, 234, 297, 488, 579
DraIII	CACNNNGTG	1 cut(s)	389
EaeI	YGGCCR	3 cut(s)	136, 268, 277
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
Eco130I	CCWWGG	2 cut(s)	252, 632
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	321, 493
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	252, 632
ErhI	CCWWGG	2 cut(s)	252, 632
FaeI	CATG	3 cut(s)	29, 256, 357
FaiI	YATR	9 cut(s)	21, 27, 254, 267, 355, 409, 421, 462, 589
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	25, 252, 353
Fnu4HI	GCNGC	3 cut(s)	51, 54, 79
FokI	GGATG	3 cut(s)	371, 432, 649
Fsp4HI	GCNGC	3 cut(s)	51, 54, 79
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	3 cut(s)	51, 54, 79
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	138, 154, 270, 279
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	29, 256, 357
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	2 cut(s)	375, 471
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	6 cut(s)	64, 202, 292, 426, 580, 728
Hpy188III	TCNNGA	2 cut(s)	181, 389
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	1 cut(s)	636
HpyCH4IV	ACGT	2 cut(s)	287, 506
HpyCH4V	TGCA	8 cut(s)	23, 50, 90, 110, 159, 228, 362, 655
HpyF3I	CTNAG	6 cut(s)	43, 100, 234, 297, 488, 579
HpySE526I	ACGT	2 cut(s)	287, 506
Hsp92II	CATG	3 cut(s)	29, 256, 357
HspAI	GCGC	1 cut(s)	186
Lsp1109I	GCAGC	2 cut(s)	62, 65
LweI	GCATC	3 cut(s)	168, 349, 642
MaeII	ACGT	2 cut(s)	287, 506
MaeIII	GTNAC	2 cut(s)	124, 413
MboII	GAAGA	3 cut(s)	465, 679, 685
MhlI	GDGCHC	1 cut(s)	221
MlsI	TGGCCA	2 cut(s)	138, 279
MluCI	AATT	4 cut(s)	67, 574, 601, 678
MluNI	TGGCCA	2 cut(s)	138, 279
MnlI	CCTC	8 cut(s)	199, 328, 348, 396, 457, 487, 491, 701
Mox20I	TGGCCA	2 cut(s)	138, 279
MscI	TGGCCA	2 cut(s)	138, 279
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	3 cut(s)	28, 251, 352
Msp20I	TGGCCA	2 cut(s)	138, 279
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	323, 495
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	2 cut(s)	323, 495
MvnI	CGCG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	252
NlaIII	CATG	3 cut(s)	29, 256, 357
NlaIV	GGNNCC	2 cut(s)	258, 315
NmuCI	GTSAC	1 cut(s)	124
PasI	CCCWGGG	1 cut(s)	322
PctI	GAATGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	3 cut(s)	266, 529, 533
PkrI	GCNGC	3 cut(s)	52, 55, 80
Psp1406I	AACGTT	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	321, 493
PspGI	CCWGG	2 cut(s)	321, 493
PspN4I	GGNNCC	2 cut(s)	258, 315
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	2 cut(s)	56, 296
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	3 cut(s)	146, 336, 608
RsaNI	GTAC	3 cut(s)	145, 335, 607
RseI	CAYNNNNRTG	3 cut(s)	28, 251, 352
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	51, 54, 79
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	323, 495
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	3 cut(s)	168, 349, 642
SfcI	CTRYAG	1 cut(s)	451
SfiI	GGCCNNNNNGGCC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	28, 251, 352
Sse9I	AATT	4 cut(s)	67, 574, 601, 678
SsiI	CCGC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	321, 493
StyI	CCWWGG	2 cut(s)	252, 632
TaiI	ACGT	2 cut(s)	290, 509
TasI	AATT	4 cut(s)	67, 574, 601, 678
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	221, 489
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	50, 53
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	23, 42, 219
TspRI	CASTG	2 cut(s)	221, 489
Van91I	CCANNNNNTGG	3 cut(s)	266, 529, 533
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	574, 601, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.