Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Reverse (-)

6166591 .. 6169375

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGATAGAGGACACTACCTATAGATGCAATAGCCCACTAAAAGGTTTACTGATGAGGAAGAGGAAGAAGAAAGCTCCGGTGGGAGTTCTAGAAGAGTCTCAACAAATTTACAGCGCCGGCCCTTCTGCGAATCTCTTTCCGGTGGAAGAATCAAATTGGAAGAGCAGAAAGATGGAAATGCAGCAATACTGTGCACATGAATGGAAGTCCATCTTAGGTGCAACAGCCGATTCTGAAAATTCTAAAGGTGGCTTTGACTGCAACATCTGCTTAGACTTTGCACACGAGCCAGTGGTCACCCTCTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGCACCTCCCTTGCGTCTGATGAGTGCCCTCAGTGCCCTGTTTGCAAGACCGAGATATCACACACCACCATGGTCCCCCTTTATGGCCGTGGCCAAACAACTTCAGAAGCTGAGCTCAAAGGAAAGGCACCCTCCCGGGGAATAATAATACCTCCCAGACCATCAGCATGGGATGCACAAGCTCTTCTATCTAATTCACCTCGTAATGGTCAGCAACTTCCATATCGTAACCCTTATCAGAACCAACAATATAGCTCTCATCCCTACAGCAGTTATGAGGAACAATCTTCCTCACCACTGCTTAGCCTCGGAGGCACAACGTTAGCTGGTATCAACCATCCGATGGCTGGTCTATTTGGGGAGATGGTTTATGCAAGGGTGTTCGGAAACTCTGAGAGCTTATACGCATATCCAAATTCGTACCACCTAACTGGCAGTAGTAGTCCAAGGTTGAGAAGGCACGAGATGCAGGCAGAAAAGTCGCTAAACAGAATTTCTTTCTTCCTCTTCTGTTGCTTGCTTTTGTGCCTTGTTGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

300

Amino Acids

33.51

Weight (kDa)

7.91

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	87 - 134	4.4e-07	Ring finger domain
zf-C3HC4	PF00097	88 - 134	1.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	88 - 131	2.1e-06	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	88 - 139	5.5e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	88 - 117	6e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	700
AclI	AACGTT	1 cut(s)	677
AcoI	YGGCCR	3 cut(s)	310, 442, 448
AcsI	RAATTY	4 cut(s)	108, 241, 772, 849
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	320, 779
AfiI	CCNNNNNNNGG	6 cut(s)	44, 440, 494, 563, 700, 704
AjiI	CACGTC	1 cut(s)	352
AluBI	AGCT	7 cut(s)	77, 467, 472, 539, 612, 683, 756
AluI	AGCT	7 cut(s)	77, 467, 472, 539, 612, 683, 756
Alw21I	GWGCWC	3 cut(s)	199, 362, 474
Alw26I	GTCTC	1 cut(s)	105
Alw44I	GTGCAC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	5 cut(s)	121, 310, 326, 442, 448
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	4 cut(s)	108, 241, 772, 849
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	122, 430
AsuC2I	CCSGG	2 cut(s)	493, 494
AsuHPI	GGTGA	3 cut(s)	292, 546, 642
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	1 cut(s)	430
BaeGI	GKGCMC	3 cut(s)	199, 386, 395
BalI	TGGCCA	2 cut(s)	312, 450
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	2 cut(s)	287, 818
Bbv12I	GWGCWC	3 cut(s)	199, 362, 474
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	7 cut(s)	169, 221, 321, 526, 694, 702, 715
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	819, 853
BcnI	CCSGG	2 cut(s)	493, 494
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	2 cut(s)	22, 622
BfoI	RGCGCY	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	669
BisI	GCNGC	1 cut(s)	185
BlpI	GCTNAGC	2 cut(s)	468, 659
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	493, 494
Bme18I	GGWCC	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	492
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	122, 430
BmiI	GGNNCC	2 cut(s)	432, 486
BmrFI	CCNGG	2 cut(s)	493, 494
BmsI	GCATC	4 cut(s)	17, 342, 520, 813
Bpu1102I	GCTNAGC	2 cut(s)	468, 659
BpuMI	CCSGG	2 cut(s)	493, 494
BsaJI	CCNNGG	6 cut(s)	426, 445, 492, 493, 664, 803
BsaWI	WCCGGW	2 cut(s)	79, 142
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 440, 494, 563, 700, 704
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	293, 793
BseDI	CCNNGG	6 cut(s)	426, 445, 492, 493, 664, 803
BseGI	GGATG	3 cut(s)	535, 616, 694
BseLI	CCNNNNNNNGG	6 cut(s)	44, 440, 494, 563, 700, 704
BseMII	CTCAG	3 cut(s)	401, 459, 741
BseNI	ACTGG	2 cut(s)	293, 793
BseSI	GKGCMC	3 cut(s)	199, 386, 395
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	5 cut(s)	123, 312, 328, 444, 450
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	3 cut(s)	199, 362, 474
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	4 cut(s)	80, 120, 143, 493
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	6 cut(s)	44, 440, 494, 563, 700, 704
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	5 cut(s)	123, 312, 328, 444, 450
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	5 cut(s)	199, 362, 386, 395, 474
Bsp1720I	GCTNAGC	2 cut(s)	468, 659
Bsp19I	CCATGG	1 cut(s)	426
BspANI	GGCC	5 cut(s)	123, 312, 328, 444, 450
BspCNI	CTCAG	3 cut(s)	400, 460, 742
BspLI	GGNNCC	2 cut(s)	432, 486
BspQI	GCTCTTC	2 cut(s)	158, 546
BspT107I	GGYRCC	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	293, 793
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	6 cut(s)	426, 445, 492, 493, 664, 803
BssSI	CACGAG	2 cut(s)	287, 818
BssT1I	CCWWGG	2 cut(s)	426, 803
Bst2BI	CACGAG	2 cut(s)	287, 818
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	5 cut(s)	56, 90, 158, 546, 869
BstAPI	GCANNNNNTGC	3 cut(s)	270, 530, 823
BstC8I	GCNNGC	4 cut(s)	121, 326, 828, 875
BstDEI	CTNAG	6 cut(s)	217, 274, 387, 468, 659, 750
BstDSI	CCRYGG	2 cut(s)	426, 445
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	535, 616, 694
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	8 cut(s)	261, 270, 330, 390, 399, 530, 669, 823
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	491, 492
BstSFI	CTRYAG	2 cut(s)	22, 622
BstSLI	GKGCMC	3 cut(s)	199, 386, 395
BstV1I	GCAGC	1 cut(s)	196
BstXI	CCANNNNNNTGG	2 cut(s)	525, 788
BsuRI	GGCC	5 cut(s)	123, 312, 328, 444, 450
BtgI	CCRYGG	2 cut(s)	426, 445
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	535, 616, 694
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	3 cut(s)	300, 395, 653
Cac8I	GCNNGC	4 cut(s)	121, 326, 828, 875
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	122, 430
Cfr9I	CCCGGG	1 cut(s)	492
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	319, 778
CviAII	CATG	3 cut(s)	200, 427, 525
CviQI	GTAC	2 cut(s)	319, 778
DdeI	CTNAG	6 cut(s)	217, 274, 387, 468, 659, 750
EaeI	YGGCCR	3 cut(s)	310, 442, 448
Eam1104I	CTCTTC	5 cut(s)	56, 90, 158, 546, 869
EarI	CTCTTC	5 cut(s)	56, 90, 158, 546, 869
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	426, 803
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	426, 803
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	2 cut(s)	426, 803
FaeI	CATG	3 cut(s)	203, 430, 528
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	3 cut(s)	199, 426, 524
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	542, 603, 681
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	5 cut(s)	123, 312, 328, 444, 450
HapII	CCGG	4 cut(s)	80, 120, 143, 493
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	203, 430, 528
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	4 cut(s)	98, 133, 152, 233
HpaII	CCGG	4 cut(s)	80, 120, 143, 493
HphI	GGTGA	3 cut(s)	292, 546, 642
Hpy166II	GTNNAC	2 cut(s)	50, 197
Hpy188I	TCNGA	9 cut(s)	238, 376, 463, 597, 668, 699, 743, 751, 899
Hpy188III	TCNNGA	2 cut(s)	92, 355
Hpy8I	GTNNAC	2 cut(s)	50, 197
HpyAV	CCTTC	2 cut(s)	135, 807
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	351, 677
HpyF10VI	GCNNNNNNNGC	8 cut(s)	261, 270, 330, 390, 399, 530, 669, 823
HpyF3I	CTNAG	6 cut(s)	217, 274, 387, 468, 659, 750
HpySE526I	ACGT	2 cut(s)	351, 677
Hsp92II	CATG	3 cut(s)	203, 430, 528
HspAI	GCGC	1 cut(s)	117
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
LguI	GCTCTTC	2 cut(s)	158, 546
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	4 cut(s)	17, 342, 520, 813
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	2 cut(s)	351, 677
MaeIII	GTNAC	2 cut(s)	298, 584
MhlI	GDGCHC	5 cut(s)	199, 362, 386, 395, 474
MlsI	TGGCCA	2 cut(s)	312, 450
MluCI	AATT	6 cut(s)	108, 157, 241, 550, 772, 849
MluNI	TGGCCA	2 cut(s)	312, 450
MlyI	GAGTC	1 cut(s)	107
Mox20I	TGGCCA	2 cut(s)	312, 450
MroNI	GCCGGC	1 cut(s)	119
MscI	TGGCCA	2 cut(s)	312, 450
MslI	CAYNNNNRTG	3 cut(s)	202, 425, 523
Msp20I	TGGCCA	2 cut(s)	312, 450
MspI	CCGG	4 cut(s)	80, 120, 143, 493
MspR9I	CCNGG	2 cut(s)	493, 494
MwoI	GCNNNNNNNGC	8 cut(s)	261, 270, 330, 390, 399, 530, 669, 823
NaeI	GCCGGC	1 cut(s)	121
NciI	CCSGG	2 cut(s)	493, 494
NcoI	CCATGG	1 cut(s)	426
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	3 cut(s)	203, 430, 528
NlaIV	GGNNCC	2 cut(s)	432, 486
NmuCI	GTSAC	1 cut(s)	298
PciSI	GCTCTTC	2 cut(s)	158, 546
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	133, 152, 233
PflMI	CCANNNNNTGG	1 cut(s)	700
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	474
Psp1406I	AACGTT	1 cut(s)	677
PspEI	GGTNACC	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	432, 486
PspPI	GGNCC	2 cut(s)	122, 430
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	320, 779
RsaNI	GTAC	2 cut(s)	319, 778
RseI	CAYNNNNRTG	3 cut(s)	202, 425, 523
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	2 cut(s)	158, 546
SatI	GCNGC	1 cut(s)	185
Sau96I	GGNCC	2 cut(s)	122, 430
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	493, 494
SduI	GDGCHC	5 cut(s)	199, 362, 386, 395, 474
SfaNI	GCATC	4 cut(s)	17, 342, 520, 813
SfcI	CTRYAG	2 cut(s)	22, 622
SinI	GGWCC	1 cut(s)	430
SmaI	CCCGGG	1 cut(s)	494
SmiMI	CAYNNNNRTG	3 cut(s)	202, 425, 523
Sse9I	AATT	6 cut(s)	108, 157, 241, 550, 772, 849
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	491, 492
StyI	CCWWGG	2 cut(s)	426, 803
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	2 cut(s)	354, 680
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	6 cut(s)	108, 157, 241, 550, 772, 849
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	133, 152, 233
TscAI	CASTG	3 cut(s)	300, 395, 660
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	216
TspMI	CCCGGG	1 cut(s)	492
TspRI	CASTG	3 cut(s)	300, 395, 660
Van91I	CCANNNNNTGG	1 cut(s)	700
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	4 cut(s)	108, 241, 772, 849
XbaI	TCTAGA	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XmaI	CCCGGG	1 cut(s)	492
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.