Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007228.1

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Reverse (-)

20568 .. 21293

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007228.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggaaatgcagcaatactgtgcacatgaatggaagtccatcttaggtgcaacagccgattctgaaaattctaaaggcggctttgactgcaacatctgcttagactttgcacacgagccagtggtcaccctctgtggccatctgtactgctggccttgcatctacaaatggcttcacgtccagagcgcctcccttgcgcctgatgagtgccctcagtgccctgtttgcaagactgagatatcacacaccaccatggtccccctttatggccgtggccaaacaacttcagaagctgagctcaaaggaaaggcaccctcccggggaataatagtacctcccagaccatcagcatgggatgcacaagctcttctatctaactcacctcgtaatggtcagcaacttccatatcgtaacccttatcagaaccaacaatatagctctcatccctacagcagttatgaggaacaatcttcctcaccactgcttagcctcggaggcacaacgttagctggtatcaaccatccgatggctggtctatttggggagatggtttatgcaagggtgttcggaaactctgagagcttatacgcgtatccaaattcgtaccacctaacgggcagtagtagtccaaggttgagaaggcacgagatgcaggcagaaaagtccctaaacagaatttctttcttcctcttctgttgcttgcttttgtgccttattgttttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

241

Amino Acids

26.87

Weight (kDa)

6.49

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccII	CGCG	1 cut(s)	590
AciI	CCGC	1 cut(s)	78
AclI	AACGTT	1 cut(s)	503
AcoI	YGGCCR	3 cut(s)	136, 268, 274
AcsI	RAATTY	3 cut(s)	67, 598, 675
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	3 cut(s)	146, 333, 605
AfiI	CCNNNNNNNGG	6 cut(s)	266, 320, 389, 526, 530, 613
AflIII	ACRYGT	1 cut(s)	588
AjiI	CACGTC	1 cut(s)	178
AluBI	AGCT	6 cut(s)	293, 298, 365, 438, 509, 582
AluI	AGCT	6 cut(s)	293, 298, 365, 438, 509, 582
Alw21I	GWGCWC	2 cut(s)	25, 300
Alw44I	GTGCAC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	4 cut(s)	136, 152, 268, 274
ApaLI	GTGCAC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	3 cut(s)	67, 598, 675
AspLEI	GCGC	2 cut(s)	188, 199
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	2 cut(s)	319, 320
AsuHPI	GGTGA	3 cut(s)	118, 372, 468
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	3 cut(s)	25, 212, 221
BalI	TGGCCA	2 cut(s)	138, 276
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	2 cut(s)	113, 644
Bbv12I	GWGCWC	2 cut(s)	25, 300
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	6 cut(s)	47, 147, 352, 520, 528, 541
BceAI	ACGGC	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	319, 320
BfmI	CTRYAG	1 cut(s)	448
BfoI	RGCGCY	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	603
BglI	GCCNNNNNGGC	1 cut(s)	495
BisI	GCNGC	2 cut(s)	11, 79
BlpI	GCTNAGC	2 cut(s)	294, 485
BlsI	GCNGC	2 cut(s)	12, 80
Bme1390I	CCNGG	2 cut(s)	319, 320
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	258, 312
BmrFI	CCNGG	2 cut(s)	319, 320
BmsI	GCATC	3 cut(s)	168, 346, 639
Bpu1102I	GCTNAGC	2 cut(s)	294, 485
BpuMI	CCSGG	2 cut(s)	319, 320
BsaJI	CCNNGG	6 cut(s)	252, 271, 318, 319, 490, 629
Bsc4I	CCNNNNNNNGG	6 cut(s)	266, 320, 389, 526, 530, 613
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	6 cut(s)	252, 271, 318, 319, 490, 629
BseGI	GGATG	3 cut(s)	361, 442, 520
BseLI	CCNNNNNNNGG	6 cut(s)	266, 320, 389, 526, 530, 613
BseMII	CTCAG	4 cut(s)	225, 227, 285, 567
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	3 cut(s)	25, 212, 221
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	4 cut(s)	138, 154, 270, 276
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	2 cut(s)	25, 300
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	2 cut(s)	242, 649
BslI	CCNNNNNNNGG	6 cut(s)	266, 320, 389, 526, 530, 613
BsmFI	GGGAC	2 cut(s)	242, 649
BsnI	GGCC	4 cut(s)	138, 154, 270, 276
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	4 cut(s)	25, 212, 221, 300
Bsp1720I	GCTNAGC	2 cut(s)	294, 485
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	138, 154, 270, 276
BspCNI	CTCAG	4 cut(s)	226, 226, 286, 568
BspFNI	CGCG	1 cut(s)	590
BspLI	GGNNCC	2 cut(s)	258, 312
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	6 cut(s)	252, 271, 318, 319, 490, 629
BssSI	CACGAG	2 cut(s)	113, 644
BssT1I	CCWWGG	2 cut(s)	252, 629
Bst2BI	CACGAG	2 cut(s)	113, 644
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	372, 695
BstAPI	GCANNNNNTGC	3 cut(s)	96, 356, 649
BstC8I	GCNNGC	3 cut(s)	152, 654, 701
BstDEI	CTNAG	7 cut(s)	43, 100, 213, 234, 294, 485, 576
BstDSI	CCRYGG	2 cut(s)	252, 271
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	361, 442, 520
BstFNI	CGCG	1 cut(s)	590
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 199
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 96, 156, 194, 216, 225, 356, 495, 649
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	317, 318
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	3 cut(s)	25, 212, 221
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	4 cut(s)	138, 154, 270, 276
BtgI	CCRYGG	2 cut(s)	252, 271
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	361, 442, 520
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	3 cut(s)	126, 221, 479
Cac8I	GCNNGC	3 cut(s)	152, 654, 701
CaiI	CAGNNNCTG	1 cut(s)	293
CfoI	GCGC	2 cut(s)	188, 199
Cfr13I	GGNCC	1 cut(s)	256
Cfr9I	CCCGGG	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	145, 332, 604
CviAII	CATG	3 cut(s)	26, 253, 351
CviQI	GTAC	3 cut(s)	145, 332, 604
DdeI	CTNAG	7 cut(s)	43, 100, 213, 234, 294, 485, 576
EaeI	YGGCCR	3 cut(s)	136, 268, 274
Eam1104I	CTCTTC	2 cut(s)	372, 695
EarI	CTCTTC	2 cut(s)	372, 695
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	252, 629
Eco24I	GRGCYC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	318
Eco91I	GGTNACC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	252, 629
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	252, 629
FaeI	CATG	3 cut(s)	29, 256, 354
FaiI	YATR	9 cut(s)	27, 254, 267, 352, 406, 435, 459, 555, 586
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	2 cut(s)	242, 649
FatI	CATG	3 cut(s)	25, 252, 350
Fnu4HI	GCNGC	2 cut(s)	11, 79
FokI	GGATG	3 cut(s)	368, 429, 507
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	11, 79
GlaI	GCGC	2 cut(s)	187, 198
GluI	GCNGC	2 cut(s)	11, 79
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	138, 154, 270, 276
HapII	CCGG	1 cut(s)	319
HhaI	GCGC	2 cut(s)	188, 199
Hin1II	CATG	3 cut(s)	29, 256, 354
Hin6I	GCGC	2 cut(s)	186, 197
HinP1I	GCGC	2 cut(s)	186, 197
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	3 cut(s)	118, 372, 468
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	8 cut(s)	64, 289, 423, 494, 525, 569, 577, 725
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	633
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	177, 503
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 96, 156, 194, 216, 225, 356, 495, 649
HpyF3I	CTNAG	7 cut(s)	43, 100, 213, 234, 294, 485, 576
HpySE526I	ACGT	2 cut(s)	177, 503
Hsp92II	CATG	3 cut(s)	29, 256, 354
HspAI	GCGC	2 cut(s)	186, 197
LguI	GCTCTTC	1 cut(s)	372
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	3 cut(s)	168, 346, 639
MaeII	ACGT	2 cut(s)	177, 503
MaeIII	GTNAC	2 cut(s)	124, 410
MboII	GAAGA	4 cut(s)	359, 462, 676, 682
MhlI	GDGCHC	4 cut(s)	25, 212, 221, 300
MlsI	TGGCCA	2 cut(s)	138, 276
MluCI	AATT	3 cut(s)	67, 598, 675
MluI	ACGCGT	1 cut(s)	588
MluNI	TGGCCA	2 cut(s)	138, 276
Mox20I	TGGCCA	2 cut(s)	138, 276
MscI	TGGCCA	2 cut(s)	138, 276
MslI	CAYNNNNRTG	3 cut(s)	28, 251, 349
Msp20I	TGGCCA	2 cut(s)	138, 276
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	2 cut(s)	319, 320
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	9 cut(s)	87, 96, 156, 194, 216, 225, 356, 495, 649
NciI	CCSGG	2 cut(s)	319, 320
NcoI	CCATGG	1 cut(s)	252
NlaIII	CATG	3 cut(s)	29, 256, 354
NlaIV	GGNNCC	2 cut(s)	258, 312
NmuCI	GTSAC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	12, 80
Psp124BI	GAGCTC	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	503
PspEI	GGTNACC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	258, 312
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	146, 333, 605
RsaNI	GTAC	3 cut(s)	145, 332, 604
RseI	CAYNNNNRTG	3 cut(s)	28, 251, 349
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	372
SatI	GCNGC	2 cut(s)	11, 79
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	319, 320
SduI	GDGCHC	4 cut(s)	25, 212, 221, 300
SfaNI	GCATC	3 cut(s)	168, 346, 639
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	256
SmaI	CCCGGG	1 cut(s)	320
SmiMI	CAYNNNNRTG	3 cut(s)	28, 251, 349
Sse9I	AATT	3 cut(s)	67, 598, 675
SsiI	CCGC	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	317, 318
StyI	CCWWGG	2 cut(s)	252, 629
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	180, 506
TasI	AATT	3 cut(s)	67, 598, 675
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	3 cut(s)	126, 221, 486
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	42
TspMI	CCCGGG	1 cut(s)	318
TspRI	CASTG	3 cut(s)	126, 221, 486
Van91I	CCANNNNNTGG	1 cut(s)	526
VneI	GTGCAC	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	67, 598, 675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XmaI	CCCGGG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.