Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308883.1

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 527

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308883.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 527 bp

ctgatgagtgccctcagtgccctgtttgcaagactgagatatcacacaccaccatggtccccctttatggccgtggccaaacaacttcagaagctgagctcaaaggaaaggcaccctcccggggaataatagtacctcccagaccatcagcatgggatgcacaagctcttctatctaactcacctcgtaatggtcagcaacttccatatcgtaacccttatcagaaccaacaatatagctctcatccctacagcagttatgaggaacaatcttcctcaccactgcttagcctcggaggcacaacgttagctggtatcaaccatccgatggctggtctatttggggagatggtttatgcaagggtgttcggaaactctgagagcttatacgcgtatccaaattcgtaccacctaacgggcagtagtagtccaaggttgagaaggcacgagatgcaggcagaaaagtccctaaacagaatttctttcttcctcttctgttgcttgcttttgtgccttattgttttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

174

Amino Acids

19.34

Weight (kDa)

8.26

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	327
AccII	CGCG	1 cut(s)	391
AclI	AACGTT	1 cut(s)	304
AcoI	YGGCCR	2 cut(s)	69, 75
AcsI	RAATTY	2 cut(s)	399, 476
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	134, 406
AfiI	CCNNNNNNNGG	6 cut(s)	67, 121, 190, 327, 331, 414
AflIII	ACRYGT	1 cut(s)	389
AluBI	AGCT	6 cut(s)	94, 99, 166, 239, 310, 383
AluI	AGCT	6 cut(s)	94, 99, 166, 239, 310, 383
Alw21I	GWGCWC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	69, 75
ApoI	RAATTY	2 cut(s)	399, 476
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	2 cut(s)	120, 121
AsuHPI	GGTGA	2 cut(s)	173, 269
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	2 cut(s)	13, 22
BalI	TGGCCA	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	4 cut(s)	153, 321, 329, 342
BceAI	ACGGC	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	404
BcnI	CCSGG	2 cut(s)	120, 121
BfmI	CTRYAG	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	296
BlpI	GCTNAGC	2 cut(s)	95, 286
Bme1390I	CCNGG	2 cut(s)	120, 121
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	59, 113
BmrFI	CCNGG	2 cut(s)	120, 121
BmsI	GCATC	2 cut(s)	147, 440
Bpu1102I	GCTNAGC	2 cut(s)	95, 286
BpuMI	CCSGG	2 cut(s)	120, 121
BsaJI	CCNNGG	6 cut(s)	53, 72, 119, 120, 291, 430
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 121, 190, 327, 331, 414
BseDI	CCNNGG	6 cut(s)	53, 72, 119, 120, 291, 430
BseGI	GGATG	3 cut(s)	162, 243, 321
BseLI	CCNNNNNNNGG	6 cut(s)	67, 121, 190, 327, 331, 414
BseMII	CTCAG	4 cut(s)	26, 28, 86, 368
BseSI	GKGCMC	2 cut(s)	13, 22
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	71, 77
BshNI	GGYRCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	101
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	2 cut(s)	43, 450
BslI	CCNNNNNNNGG	6 cut(s)	67, 121, 190, 327, 331, 414
BsmFI	GGGAC	2 cut(s)	43, 450
BsnI	GGCC	2 cut(s)	71, 77
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	13, 22, 101
Bsp1720I	GCTNAGC	2 cut(s)	95, 286
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	71, 77
BspCNI	CTCAG	4 cut(s)	27, 27, 87, 369
BspFNI	CGCG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	59, 113
BspQI	GCTCTTC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	111
BssECI	CCNNGG	6 cut(s)	53, 72, 119, 120, 291, 430
BssSI	CACGAG	1 cut(s)	445
BssT1I	CCWWGG	2 cut(s)	53, 430
Bst2BI	CACGAG	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	173, 496
BstAPI	GCANNNNNTGC	2 cut(s)	157, 450
BstC8I	GCNNGC	2 cut(s)	455, 502
BstDEI	CTNAG	5 cut(s)	14, 35, 95, 286, 377
BstDSI	CCRYGG	2 cut(s)	53, 72
BstF5I	GGATG	3 cut(s)	162, 243, 321
BstFNI	CGCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 26, 157, 296, 450
BstSCI	CCNGG	2 cut(s)	118, 119
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	2 cut(s)	13, 22
BstUI	CGCG	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	71, 77
BtgI	CCRYGG	2 cut(s)	53, 72
BtsCI	GGATG	3 cut(s)	162, 243, 321
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	22, 280
Cac8I	GCNNGC	2 cut(s)	455, 502
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	57
Cfr9I	CCCGGG	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	133, 405
CviAII	CATG	2 cut(s)	54, 152
CviQI	GTAC	2 cut(s)	133, 405
DdeI	CTNAG	5 cut(s)	14, 35, 95, 286, 377
EaeI	YGGCCR	2 cut(s)	69, 75
Eam1104I	CTCTTC	2 cut(s)	173, 496
EarI	CTCTTC	2 cut(s)	173, 496
Ecl136II	GAGCTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	53, 430
Eco24I	GRGCYC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	41
EcoT14I	CCWWGG	2 cut(s)	53, 430
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	2 cut(s)	53, 430
FaeI	CATG	2 cut(s)	57, 155
FaiI	YATR	8 cut(s)	55, 68, 153, 207, 236, 260, 356, 387
FaqI	GGGAC	2 cut(s)	43, 450
FatI	CATG	2 cut(s)	53, 151
FokI	GGATG	3 cut(s)	169, 230, 308
FriOI	GRGCYC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	71, 77
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	57, 155
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	2 cut(s)	173, 269
Hpy188I	TCNGA	7 cut(s)	90, 224, 295, 326, 370, 378, 526
HpyAV	CCTTC	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	29, 160, 358, 453
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 26, 157, 296, 450
HpyF3I	CTNAG	5 cut(s)	14, 35, 95, 286, 377
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	2 cut(s)	57, 155
LguI	GCTCTTC	1 cut(s)	173
LpnPI	CCDG	6 cut(s)	35, 133, 153, 296, 317, 439
LweI	GCATC	2 cut(s)	147, 440
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	160, 263, 477, 483
MhlI	GDGCHC	3 cut(s)	13, 22, 101
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	2 cut(s)	399, 476
MluI	ACGCGT	1 cut(s)	389
MluNI	TGGCCA	1 cut(s)	77
MnlI	CCTC	9 cut(s)	23, 126, 146, 194, 255, 285, 289, 301, 499
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MslI	CAYNNNNRTG	2 cut(s)	52, 150
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	120, 121
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	5 cut(s)	17, 26, 157, 296, 450
NciI	CCSGG	2 cut(s)	120, 121
NcoI	CCATGG	1 cut(s)	53
NlaIII	CATG	2 cut(s)	57, 155
NlaIV	GGNNCC	2 cut(s)	59, 113
PciSI	GCTCTTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	101
Psp1406I	AACGTT	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	59, 113
PspPI	GGNCC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	94
RsaI	GTAC	2 cut(s)	134, 406
RsaNI	GTAC	2 cut(s)	133, 405
RseI	CAYNNNNRTG	2 cut(s)	52, 150
SacI	GAGCTC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	57
ScrFI	CCNGG	2 cut(s)	120, 121
SduI	GDGCHC	3 cut(s)	13, 22, 101
SfaNI	GCATC	2 cut(s)	147, 440
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	57
SmaI	CCCGGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	52, 150
Sse9I	AATT	2 cut(s)	399, 476
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	118, 119
StyI	CCWWGG	2 cut(s)	53, 430
TaiI	ACGT	1 cut(s)	307
TasI	AATT	2 cut(s)	399, 476
TscAI	CASTG	2 cut(s)	22, 287
TspMI	CCCGGG	1 cut(s)	119
TspRI	CASTG	2 cut(s)	22, 287
Van91I	CCANNNNNTGG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	2 cut(s)	399, 476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmaI	CCCGGG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.