AT4G27680

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010923
Physical Location & Seq
Forward (+)
13821019 .. 13823408
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27680.1

Sequence Viewer

Length: 1197 bp
ATGGGAGGTTCGTCGGAGACAAAGATCTTACAAGAACTCATACTTTACGCGGCGAGCGCTGCTTTCAGCTGCTTGGTTCTCTTTGCGGGTCTTCGTCATCTCGATCCTAATCGTGAGGCTTCTAAAAAAGCTCTCGAGCATAAGAAGGAAATCTCTAAACGTTTGGGTCGTCCTCTTGTTCAGACCAATCCATACGAGGATGTAATTGCATGTGATGTGATAAATCCAGACCACATTGATGTGGAGTTTGGTTCTATTGGAGGGTTGGAGACCATCAAGCAGGCTTTGTATGAGCTTGTGATTTTACCACTGAAAAGACCTGAGCTTTTTGCTTACGGGAAGCTTCTTGGACCTCAAAAAGGTGTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATGCTTGCTAAGGCTATTGCCAAAGAGTCAGGAGCTGTTTTCATTAATGTTAGGGTTTCAAACCTGATGAGCAAGTGGTTTGGAGATGCTCAGAAGCTTGTTTCTGCTGTGTTTAGCTTGGCCTACAAACTCCAACCTGCTATCATTTTTATTGATGAGGTTGAGAGCTTTCTTGGTCAGCGCCGTTCAACAGATCATGAAGCTATGGCCAACATGAAGACTGAGTTTATGGCTTTATGGGATGGATTCTCTACTGATCCGCATGCAAGGGTTATGGTTCTTGCTGCAACTAACAGACCGTCAGAGCTTGATGAAGCAATATTAAGGCGTCTTCCTCAGGCCTTTGAGATTGGAATACCTGATCGCCGGGAGAGAGCTGAGATATTGAAAGTGACTCTGAAAGGAGAGAGGGTGGAACCTGATATTGACTTTGATCACATAGCTCGCTTATGCGAAGGCTATACCGGATCAGACATTTTTGAGCTATGCAAGAAAGCAGCTTACTTCCCTATCAGAGAAATCCTAGATGCAGAGAGAAAGGGGAAACCATGTTTGGACCCTAGGCCATTATCACAGTTAGATTTGGAGAAGGTTCTTGCAACGTCAAAGAAGACACAAGTTGCAGCAGGCGAGTACTCATTGAGCTCGCAGTCCTCGGCTTGGAGAGGCTCAAGGGAACCAGATGAGGTCCAGGCAGCGATAAGTGGGATCTCGAAGCTTCTAGTTTCTCAGATCATTAACCTACAGTCAGAATCTCAGGATTCATGGCAGCGGGATCCCGAAGAAGATTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

398

Amino Acids

44.2

Weight (kDa)

5.85

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 122 - 250 8.8e-36 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 274 - 310 4.5e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27680 AT5G53540
fragaria_vesca FvH4_7g32510
malus_domestica MD01G1225800.v1.1 MD07G1296300.v1.1
prunus_persica Prupe.2G315900_v2.0.a1
pyrus_communis pycom01g23430 pycom07g26910
rosa_chinensis RchiOBHm_Chr1g0382351
rosa_laevigata RLG00000026184
rosa_multiflora Rmu_sc0000110.1_g000041 Rmu_sc0006177.1_g000002 Rmu_sc0028160.1_g000002
rosa_roxburghii Rroxscaffold_4G00278170
rosa_rugosa Rorug01G0433600
rosa_samantha Rh1AG458300 Rh1BG414600 Rh1CG428700 Rh1DG446700
rosa_wichuraiana Rw1G041270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccII CGCG 1 cut(s) 50
AciI CCGC 4 cut(s) 50, 86, 659, 1171
AclI AACGTT 1 cut(s) 160
AclWI GGATC 6 cut(s) 98, 650, 874, 1115, 1169, 1182
AcoI YGGCCR 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 2 cut(s) 388, 1034
AfeI AGCGCT 1 cut(s) 58
AfiI CCNNNNNNNGG 3 cut(s) 359, 389, 1059
AgsI TTSAA 3 cut(s) 459, 588, 787
AjnI CCWGG 2 cut(s) 382, 1089
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
Alw21I GWGCWC 1 cut(s) 1046
Alw26I GTCTC 2 cut(s) 11, 263
AlwI GGATC 6 cut(s) 98, 650, 874, 1115, 1169, 1182
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 58
AoxI GGCC 4 cut(s) 519, 606, 738, 962
ApeKI GCWGC 7 cut(s) 59, 69, 683, 896, 1022, 1094, 1168
AseI ATTAAT 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 959
AspLEI GCGC 2 cut(s) 59, 582
AspS9I GGNCC 4 cut(s) 350, 377, 955, 1087
AsuC2I CCSGG 1 cut(s) 767
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 4 cut(s) 350, 377, 955, 1087
AvrII CCTAGG 1 cut(s) 959
AxyI CCTNAGG 1 cut(s) 735
BalI TGGCCA 1 cut(s) 608
BamHI GGATCC 1 cut(s) 1174
BanII GRGCYC 1 cut(s) 1046
BbsI GAAGAC 4 cut(s) 83, 623, 722, 1016
Bbv12I GWGCWC 1 cut(s) 1046
BbvI GCAGC 7 cut(s) 46, 56, 670, 908, 1034, 1106, 1180
BccI CCATC 2 cut(s) 281, 635
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 2 cut(s) 384, 1091
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 2 cut(s) 11, 263
BfaI CTAG 3 cut(s) 923, 960, 1121
BfmI CTRYAG 1 cut(s) 1142
BfoI RGCGCY 2 cut(s) 60, 583
BfuAI ACCTGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 24
BisI GCNGC 8 cut(s) 51, 60, 70, 684, 897, 1023, 1095, 1169
BlnI CCTAGG 1 cut(s) 959
BlsI GCNGC 8 cut(s) 52, 61, 71, 685, 898, 1024, 1096, 1170
BmcAI AGTACT 1 cut(s) 1034
Bme1390I CCNGG 3 cut(s) 384, 767, 1091
Bme18I GGWCC 4 cut(s) 350, 377, 955, 1087
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 4 cut(s) 350, 377, 955, 1087
BmiI GGNNCC 4 cut(s) 816, 957, 1077, 1176
BmrFI CCNGG 3 cut(s) 384, 767, 1091
BmsI GCATC 2 cut(s) 475, 916
BpiI GAAGAC 4 cut(s) 83, 623, 722, 1016
Bpu10I CCTNAGC 2 cut(s) 321, 408
BpuEI CTTGAG 1 cut(s) 1054
BpuMI CCSGG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 727
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 959, 1053
BsaWI WCCGGW 1 cut(s) 863
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 389, 1059
Bse1I ACTGG 1 cut(s) 394
Bse21I CCTNAGG 1 cut(s) 735
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 2 cut(s) 384, 1091
BseDI CCNNGG 2 cut(s) 959, 1053
BseGI GGATG 2 cut(s) 205, 646
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 359, 389, 1059
BseMII CTCAG 7 cut(s) 312, 503, 612, 749, 768, 1142, 1169
BseNI ACTGG 1 cut(s) 394
BseXI GCAGC 7 cut(s) 46, 56, 670, 908, 1034, 1106, 1180
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 4 cut(s) 521, 608, 740, 964
BsiHKAI GWGCWC 1 cut(s) 1046
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 766, 864
BslI CCNNNNNNNGG 3 cut(s) 359, 389, 1059
BsmAI GTCTC 2 cut(s) 11, 263
BsnI GGCC 4 cut(s) 521, 608, 740, 964
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 1046
BspACI CCGC 4 cut(s) 50, 86, 659, 1171
BspANI GGCC 4 cut(s) 521, 608, 740, 964
BspCNI CTCAG 7 cut(s) 313, 502, 613, 748, 769, 1141, 1168
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 4 cut(s) 816, 957, 1077, 1176
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 6 cut(s) 98, 650, 874, 1115, 1169, 1182
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 959, 1053
BssNI GRCGYC 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 959
Bst2UI CCWGG 2 cut(s) 384, 1091
Bst4CI ACNGT 3 cut(s) 699, 975, 1146
BstACI GRCGYC 1 cut(s) 727
BstC8I GCNNGC 7 cut(s) 55, 282, 405, 663, 844, 1027, 1046
BstDEI CTNAG 8 cut(s) 321, 408, 489, 621, 735, 777, 1128, 1155
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 205, 646
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 2 cut(s) 60, 583
BstHHI GCGC 2 cut(s) 59, 582
BstMAI GTCTC 2 cut(s) 11, 263
BstMWI GCNNNNNNNGC 2 cut(s) 56, 59
BstNI CCWGG 2 cut(s) 384, 1091
BstNSI RCATGY 2 cut(s) 213, 665
BstSCI CCNGG 3 cut(s) 382, 765, 1089
BstSFI CTRYAG 1 cut(s) 1142
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 7 cut(s) 46, 56, 670, 908, 1034, 1106, 1180
BstV2I GAAGAC 4 cut(s) 83, 623, 722, 1016
BstX2I RGATCY 3 cut(s) 24, 1107, 1174
BstYI RGATCY 3 cut(s) 24, 1107, 1174
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 4 cut(s) 521, 608, 740, 964
BtsCI GGATG 2 cut(s) 205, 646
BtsIMutI CAGTG 1 cut(s) 308
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 7 cut(s) 55, 282, 405, 663, 844, 1027, 1046
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 595
CfoI GCGC 2 cut(s) 59, 582
Cfr13I GGNCC 4 cut(s) 350, 377, 955, 1087
CseI GACGC 1 cut(s) 716
Csp6I GTAC 2 cut(s) 387, 1033
CviAII CATG 6 cut(s) 210, 596, 613, 662, 948, 1164
CviQI GTAC 2 cut(s) 387, 1033
DdeI CTNAG 8 cut(s) 321, 408, 489, 621, 735, 777, 1128, 1155
EaeI YGGCCR 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 1044
Eco130I CCWWGG 1 cut(s) 959
Eco147I AGGCCT 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 1046
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 4 cut(s) 350, 377, 955, 1087
Eco47III AGCGCT 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 1044
Eco81I CCTNAGG 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 1044
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 382, 1089
EcoT14I CCWWGG 1 cut(s) 959
EcoT38I GRGCYC 1 cut(s) 1046
ErhI CCWWGG 1 cut(s) 959
FaeI CATG 6 cut(s) 213, 599, 616, 665, 951, 1167
FatI CATG 6 cut(s) 209, 595, 612, 661, 947, 1163
FauI CCCGC 2 cut(s) 79, 1164
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 8 cut(s) 51, 60, 70, 684, 897, 1023, 1095, 1169
FokI GGATG 2 cut(s) 212, 653
FriOI GRGCYC 1 cut(s) 1046
Fsp4HI GCNGC 8 cut(s) 51, 60, 70, 684, 897, 1023, 1095, 1169
FspBI CTAG 3 cut(s) 923, 960, 1121
GlaI GCGC 2 cut(s) 58, 581
GluI GCNGC 8 cut(s) 51, 60, 70, 684, 897, 1023, 1095, 1169
HaeII RGCGCY 2 cut(s) 60, 583
HaeIII GGCC 4 cut(s) 521, 608, 740, 964
HapII CCGG 2 cut(s) 766, 864
HgaI GACGC 1 cut(s) 716
HhaI GCGC 2 cut(s) 59, 582
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 6 cut(s) 213, 599, 616, 665, 951, 1167
Hin6I GCGC 2 cut(s) 57, 580
HinP1I GCGC 2 cut(s) 57, 580
HindIII AAGCTT 3 cut(s) 341, 494, 1115
HinfI GANTC 6 cut(s) 425, 645, 793, 1151, 1160, 1187
HpaII CCGG 2 cut(s) 766, 864
Hpy188I TCNGA 9 cut(s) 16, 183, 492, 703, 798, 871, 914, 1131, 1150
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 139, 848, 982
HpyCH4III ACNGT 3 cut(s) 699, 975, 1146
HpyCH4IV ACGT 2 cut(s) 160, 1001
HpyCH4V TGCA 7 cut(s) 209, 665, 686, 888, 929, 998, 1022
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 59
HpyF3I CTNAG 8 cut(s) 321, 408, 489, 621, 735, 777, 1128, 1155
HpySE526I ACGT 2 cut(s) 160, 1001
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 6 cut(s) 213, 599, 616, 665, 951, 1167
HspAI GCGC 2 cut(s) 57, 580
Ksp22I TGATCA 1 cut(s) 832
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 7 cut(s) 46, 56, 670, 908, 1034, 1106, 1180
LweI GCATC 2 cut(s) 475, 916
MaeI CTAG 3 cut(s) 923, 960, 1121
MaeII ACGT 2 cut(s) 160, 1001
MaeIII GTNAC 1 cut(s) 790
MboII GAAGA 6 cut(s) 83, 628, 722, 1021, 1193, 1196
MflI RGATCY 3 cut(s) 24, 1107, 1174
MhlI GDGCHC 1 cut(s) 1046
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 2 cut(s) 434, 787
MmeI TCCRAC 2 cut(s) 246, 556
Mox20I TGGCCA 1 cut(s) 608
MscI TGGCCA 1 cut(s) 608
MseI TTAA 3 cut(s) 444, 722, 1137
MslI CAYNNNNRTG 2 cut(s) 237, 239
Msp20I TGGCCA 1 cut(s) 608
MspA1I CMGCKG 2 cut(s) 69, 1171
MspI CCGG 2 cut(s) 766, 864
MspR9I CCNGG 3 cut(s) 384, 767, 1091
MvaI CCWGG 2 cut(s) 384, 1091
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 56, 59
NciI CCSGG 1 cut(s) 767
NlaIII CATG 6 cut(s) 213, 599, 616, 665, 951, 1167
NlaIV GGNNCC 4 cut(s) 816, 957, 1077, 1176
NmeAIII GCCGAG 1 cut(s) 1034
NmuCI GTSAC 1 cut(s) 790
NspI RCATGY 2 cut(s) 213, 665
PaeI GCATGC 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 595
PceI AGGCCT 1 cut(s) 740
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 4 cut(s) 645, 1151, 1160, 1187
PkrI GCNGC 8 cut(s) 52, 61, 71, 685, 898, 1024, 1096, 1170
PleI GAGTC 2 cut(s) 433, 787
PpsI GAGTC 2 cut(s) 433, 787
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 1046
Psp1406I AACGTT 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 382, 1089
PspGI CCWGG 2 cut(s) 382, 1089
PspN4I GGNNCC 4 cut(s) 816, 957, 1077, 1176
PspPI GGNCC 4 cut(s) 350, 377, 955, 1087
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 24, 1107, 1174
PvuII CAGCTG 1 cut(s) 69
RsaI GTAC 2 cut(s) 388, 1034
RsaNI GTAC 2 cut(s) 387, 1033
RseI CAYNNNNRTG 2 cut(s) 237, 239
SacI GAGCTC 1 cut(s) 1046
SaqAI TTAA 3 cut(s) 444, 722, 1137
SatI GCNGC 8 cut(s) 51, 60, 70, 684, 897, 1023, 1095, 1169
Sau96I GGNCC 4 cut(s) 350, 377, 955, 1087
ScaI AGTACT 1 cut(s) 1034
SchI GAGTC 2 cut(s) 434, 787
ScrFI CCNGG 3 cut(s) 384, 767, 1091
SduI GDGCHC 1 cut(s) 1046
SfaNI GCATC 2 cut(s) 475, 916
SfcI CTRYAG 1 cut(s) 1142
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 4 cut(s) 350, 377, 955, 1087
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 237, 239
SmlI CTYRAG 2 cut(s) 134, 1069
SmoI CTYRAG 2 cut(s) 134, 1069
SphI GCATGC 1 cut(s) 665
Sse9I AATT 1 cut(s) 204
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 4 cut(s) 50, 86, 659, 1171
SspI AATATT 1 cut(s) 720
SspMI CTAG 3 cut(s) 923, 960, 1121
SstI GAGCTC 1 cut(s) 1046
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 3 cut(s) 382, 765, 1089
StyI CCWWGG 1 cut(s) 959
TaaI ACNGT 3 cut(s) 699, 975, 1146
TaiI ACGT 2 cut(s) 163, 1004
TaqI TCGA 3 cut(s) 102, 135, 1112
TasI AATT 1 cut(s) 204
TatI WGTACW 1 cut(s) 1032
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 4 cut(s) 645, 1151, 1160, 1187
Tru1I TTAA 3 cut(s) 444, 722, 1137
Tru9I TTAA 3 cut(s) 444, 722, 1137
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 7 cut(s) 59, 69, 683, 896, 1022, 1094, 1168
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 5 cut(s) 430, 612, 629, 726, 1152
TspRI CASTG 1 cut(s) 315
VpaK11BI GGWCC 4 cut(s) 350, 377, 955, 1087
VspI ATTAAT 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 357
XceI RCATGY 2 cut(s) 213, 665
XhoI CTCGAG 1 cut(s) 134
XmaJI CCTAGG 1 cut(s) 959
XspI CTAG 3 cut(s) 923, 960, 1121
ZrmI AGTACT 1 cut(s) 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.