pycom01g23430

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010923
Physical Location & Seq
Reverse (-)
20748314 .. 20750790
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23430.3

Sequence Viewer

Length: 1170 bp
ATGGGGGGTTCACGGGAGAGGGAGACCAAGTTCCTGCAGGAACTGGTACTGTACGCGGCGAGCGCGGCGTTGAGTAGCTTGGTTTTGTTCGTGGGGCTCCGGTATCTTGATCCGAACCGGGAAACGTCTAAGAAGGCGATGGAGCACAAGAAGGAAATCGCCAAGCGACTCGGCCGACCGCTTATTAACACCAACACTTATGAGGATGTTATAGCCGGCGATGTTATAAACCCCGACCACATTGAAGTAGAATTTGGATCTATTGGAGGACTAGATGCTATAAAGGAAGCCTTGTATGAACTAGTGATCCTTCCACTTCGGAGGCCTGATTTATTTTCCCACGGGAAGCTCCTTGGTCCACAAAAAGGTGTCTTGCTGTATGGACCGCCGGGTACTGGAAAGACTATGCTTGCCAAAGCTATTGCAAAGGAGTCTGGAGCTGTTTTCATCAACCTCAGGATATCAAATCTGATGAGCAAATGGTTTGGTGATGCACAAAAGCTCGTTGCTGCTGTGTTTAGCTTGGCTTATAAACTCCAGCCTGCTATCATCTTTATTGATGAGGTTGATAGTTTCTTGGGTCAGCGCCGAACTACAGATCACGAGGCATTGACAAACATGAAAACTGAGTTCATGGCTTTATGGGATGGCTTTACTACAGATCAGAACGCTCGAGTTATGGTTCTCGCTGCTACTAATCGTCCGTCAGAACTTGATGATGCAATACTTCGGCGTCTTTCTCAGGCCTTTGAGATTGGGATGCCCGATAAAAGGGAGAGGGCTCAGATACTAAAGGTGATTTTGAAGGGTGAGAGGGTTGAAGACAATATTGATTATGATCGTTTAGCCGTCTTGTCTGAGGGTTACACAGTTTCAGCTCTAGTTAATAGGCTTGCAGGTTTTGTTTGTACTGAGAGTGTTGGTCTCTGCTGCTTTCTTCAGGCACCAAGGCTATTAACCCAGTTAGATTTGGAGAATGTTCTCGCAACTTCCAAACATACAAAGGTTGCTGCAAATGACTATACTGGGTTGTTCTCATCACAATCATCACCAGGGTGGTCGAGGAACAGCGAGACTGGTGATTATCCAGTTCAAGCTGCAATTACTGAGCTTACGAAAAACGTGGTTTCCAAAATCTTGAATATTGAACCCGATGCACAGGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

390

Amino Acids

42.95

Weight (kDa)

5.88

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27680 AT5G53540
fragaria_vesca FvH4_7g32510
malus_domestica MD01G1225800.v1.1 MD07G1296300.v1.1
prunus_persica Prupe.2G315900_v2.0.a1
pyrus_communis pycom01g23430 pycom07g26910
rosa_chinensis RchiOBHm_Chr1g0382351
rosa_laevigata RLG00000026184
rosa_multiflora Rmu_sc0000110.1_g000041 Rmu_sc0006177.1_g000002 Rmu_sc0028160.1_g000002
rosa_roxburghii Rroxscaffold_4G00278170
rosa_rugosa Rorug01G0433600
rosa_samantha Rh1AG458300 Rh1BG414600 Rh1CG428700 Rh1DG446700
rosa_wichuraiana Rw1G041270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 227, 531
Acc36I ACCTGC 1 cut(s) 887
AccB1I GGYRCC 1 cut(s) 943
AccII CGCG 2 cut(s) 56, 65
AciI CCGC 4 cut(s) 56, 65, 179, 386
AclWI GGATC 3 cut(s) 104, 265, 301
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 923
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 4 cut(s) 48, 53, 394, 910
AfiI CCNNNNNNNGG 3 cut(s) 365, 395, 771
AgsI TTSAA 6 cut(s) 245, 805, 821, 1094, 1141, 1148
AhlI ACTAGT 1 cut(s) 301
AjnI CCWGG 1 cut(s) 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AleI CACNNNNGTG 1 cut(s) 1054
AloI GAACNNNNNNTCC 4 cut(s) 14, 46, 291, 323
AluBI AGCT 9 cut(s) 78, 349, 419, 440, 502, 522, 878, 1097, 1111
AluI AGCT 9 cut(s) 78, 349, 419, 440, 502, 522, 878, 1097, 1111
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 3 cut(s) 17, 929, 1067
AlwI GGATC 3 cut(s) 104, 265, 301
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 3 cut(s) 172, 323, 744
ApeKI GCWGC 5 cut(s) 509, 689, 930, 1010, 1097
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 2 cut(s) 65, 588
AspS9I GGNCC 3 cut(s) 356, 383, 1162
AsuC2I CCSGG 2 cut(s) 119, 390
AsuHPI GGTGA 5 cut(s) 500, 808, 821, 1041, 1091
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 3 cut(s) 356, 383, 1162
AxyI CCTNAGG 1 cut(s) 455
BanI GGYRCC 1 cut(s) 943
BanII GRGCYC 2 cut(s) 99, 784
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 5 cut(s) 496, 676, 917, 997, 1084
BccI CCATC 2 cut(s) 133, 641
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 1 cut(s) 1053
BcnI CCSGG 2 cut(s) 119, 390
BcoDI GTCTC 3 cut(s) 17, 929, 1067
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 3 cut(s) 272, 302, 881
BfmI CTRYAG 3 cut(s) 35, 594, 657
BfoI RGCGCY 1 cut(s) 589
BfuAI ACCTGC 1 cut(s) 887
BisI GCNGC 7 cut(s) 57, 66, 510, 690, 931, 1011, 1098
BlsI GCNGC 7 cut(s) 58, 67, 511, 691, 932, 1012, 1099
Bme1390I CCNGG 3 cut(s) 119, 390, 1053
Bme18I GGWCC 3 cut(s) 356, 383, 1162
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 3 cut(s) 356, 383, 1162
BmiI GGNNCC 3 cut(s) 98, 945, 1164
BmrFI CCNGG 3 cut(s) 119, 390, 1053
BmrI ACTGGG 2 cut(s) 955, 1035
BmsI GCATC 5 cut(s) 265, 481, 709, 750, 1144
BmuI ACTGGG 2 cut(s) 955, 1035
BpiI GAAGAC 1 cut(s) 828
BpmI CTGGAG 2 cut(s) 456, 521
BpuMI CCSGG 2 cut(s) 119, 390
BsaBI GATNNNNATC 1 cut(s) 837
BsaHI GRCGYC 1 cut(s) 733
BsaI GGTCTC 2 cut(s) 17, 929
BsaJI CCNNGG 4 cut(s) 340, 352, 947, 1052
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 395, 771
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 6 cut(s) 48, 400, 961, 1030, 1081, 1088
Bse21I CCTNAGG 1 cut(s) 455
Bse8I GATNNNNATC 1 cut(s) 837
BseBI CCWGG 1 cut(s) 1053
BseDI CCNNGG 4 cut(s) 340, 352, 947, 1052
BseGI GGATG 3 cut(s) 211, 652, 765
BseJI GATNNNNATC 1 cut(s) 837
BseLI CCNNNNNNNGG 3 cut(s) 365, 395, 771
BseMII CTCAG 7 cut(s) 469, 618, 755, 797, 849, 903, 1098
BseNI ACTGG 6 cut(s) 48, 400, 961, 1030, 1081, 1088
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 5 cut(s) 496, 676, 917, 997, 1084
Bsh1236I CGCG 2 cut(s) 56, 65
Bsh1285I CGRYCG 2 cut(s) 175, 179
BshFI GGCC 3 cut(s) 174, 325, 746
BshNI GGYRCC 1 cut(s) 943
BsiEI CGRYCG 2 cut(s) 175, 179
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 4 cut(s) 100, 118, 216, 389
BslI CCNNNNNNNGG 3 cut(s) 365, 395, 771
BsmAI GTCTC 3 cut(s) 17, 929, 1067
BsnI GGCC 3 cut(s) 174, 325, 746
Bso31I GGTCTC 2 cut(s) 17, 929
BsoBI CYCGRG 1 cut(s) 672
Bsp1286I GDGCHC 3 cut(s) 99, 147, 784
Bsp143I GATC 6 cut(s) 109, 257, 306, 598, 661, 838
BspACI CCGC 4 cut(s) 56, 65, 179, 386
BspANI GGCC 3 cut(s) 174, 325, 746
BspCNI CTCAG 7 cut(s) 468, 619, 754, 796, 850, 904, 1099
BspFNI CGCG 2 cut(s) 56, 65
BspLI GGNNCC 3 cut(s) 98, 945, 1164
BspMAI CTGCAG 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 887
BspPI GGATC 3 cut(s) 104, 265, 301
BspT107I GGYRCC 1 cut(s) 943
BspTNI GGTCTC 2 cut(s) 17, 929
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 6 cut(s) 48, 400, 961, 1030, 1081, 1088
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 4 cut(s) 340, 352, 947, 1052
BssMI GATC 6 cut(s) 109, 257, 306, 598, 661, 838
BssNI GRCGYC 1 cut(s) 733
BssSI CACGAG 1 cut(s) 602
BssT1I CCWWGG 2 cut(s) 352, 947
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 1053
Bst4CI ACNGT 2 cut(s) 51, 871
BstACI GRCGYC 1 cut(s) 733
BstC8I GCNNGC 5 cut(s) 61, 217, 411, 543, 894
BstDEI CTNAG 8 cut(s) 129, 455, 627, 741, 783, 858, 912, 1107
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 3 cut(s) 211, 652, 765
BstFNI CGCG 2 cut(s) 56, 65
BstH2I RGCGCY 1 cut(s) 589
BstHHI GCGC 2 cut(s) 65, 588
BstKTI GATC 6 cut(s) 112, 260, 309, 601, 664, 841
BstMAI GTCTC 3 cut(s) 17, 929, 1067
BstMBI GATC 6 cut(s) 109, 257, 306, 598, 661, 838
BstMCI CGRYCG 2 cut(s) 175, 179
BstMWI GCNNNNNNNGC 2 cut(s) 62, 65
BstNI CCWGG 1 cut(s) 1053
BstSCI CCNGG 3 cut(s) 117, 388, 1051
BstSFI CTRYAG 3 cut(s) 35, 594, 657
BstUI CGCG 2 cut(s) 56, 65
BstV1I GCAGC 5 cut(s) 496, 676, 917, 997, 1084
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BstZI CGGCCG 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 455
BsuRI GGCC 3 cut(s) 174, 325, 746
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 2 cut(s) 152, 234
BtsCI GGATG 3 cut(s) 211, 652, 765
BveI ACCTGC 1 cut(s) 887
Cac8I GCNNGC 5 cut(s) 61, 217, 411, 543, 894
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 2 cut(s) 65, 588
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 3 cut(s) 356, 383, 1162
CseI GACGC 1 cut(s) 722
Csp6I GTAC 4 cut(s) 47, 52, 393, 909
CviAII CATG 2 cut(s) 619, 634
CviQI GTAC 4 cut(s) 47, 52, 393, 909
DdeI CTNAG 8 cut(s) 129, 455, 627, 741, 783, 858, 912, 1107
DpnI GATC 6 cut(s) 111, 259, 308, 600, 663, 840
DpnII GATC 6 cut(s) 109, 257, 306, 598, 661, 838
EaeI YGGCCR 1 cut(s) 172
EagI CGGCCG 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 352, 947
Eco147I AGGCCT 2 cut(s) 325, 746
Eco24I GRGCYC 2 cut(s) 99, 784
Eco31I GGTCTC 2 cut(s) 17, 929
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 3 cut(s) 356, 383, 1162
Eco52I CGGCCG 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 923
Eco81I CCTNAGG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 1162
EcoRII CCWGG 1 cut(s) 1051
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 2 cut(s) 352, 947
EcoT38I GRGCYC 2 cut(s) 99, 784
ErhI CCWWGG 2 cut(s) 352, 947
FaeI CATG 2 cut(s) 622, 637
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 2 cut(s) 618, 633
Fnu4HI GCNGC 7 cut(s) 57, 66, 510, 690, 931, 1011, 1098
FokI GGATG 3 cut(s) 218, 659, 772
FriOI GRGCYC 2 cut(s) 99, 784
Fsp4HI GCNGC 7 cut(s) 57, 66, 510, 690, 931, 1011, 1098
FspBI CTAG 3 cut(s) 272, 302, 881
GlaI GCGC 2 cut(s) 64, 587
GluI GCNGC 7 cut(s) 57, 66, 510, 690, 931, 1011, 1098
GsuI CTGGAG 2 cut(s) 456, 521
HaeII RGCGCY 1 cut(s) 589
HaeIII GGCC 3 cut(s) 174, 325, 746
HapII CCGG 4 cut(s) 100, 118, 216, 389
HgaI GACGC 1 cut(s) 722
HhaI GCGC 2 cut(s) 65, 588
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 2 cut(s) 622, 637
Hin6I GCGC 2 cut(s) 63, 586
HinP1I GCGC 2 cut(s) 63, 586
HinfI GANTC 2 cut(s) 168, 431
HpaII CCGG 4 cut(s) 100, 118, 216, 389
HphI GGTGA 5 cut(s) 500, 808, 821, 1041, 1091
Hpy166II GTNNAC 2 cut(s) 11, 359
Hpy188I TCNGA 7 cut(s) 114, 321, 471, 666, 709, 786, 859
Hpy188III TCNNGA 5 cut(s) 107, 435, 457, 602, 1138
Hpy8I GTNNAC 2 cut(s) 11, 359
HpyAV CCTTC 4 cut(s) 127, 145, 320, 799
HpyCH4III ACNGT 2 cut(s) 51, 871
HpyCH4IV ACGT 2 cut(s) 125, 1122
HpyCH4V TGCA 8 cut(s) 37, 425, 494, 722, 896, 1013, 1100, 1157
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 65
HpyF3I CTNAG 8 cut(s) 129, 455, 627, 741, 783, 858, 912, 1107
HpySE526I ACGT 2 cut(s) 125, 1122
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 2 cut(s) 622, 637
HspAI GCGC 2 cut(s) 63, 586
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 6 cut(s) 109, 257, 306, 598, 661, 838
LmnI GCTCC 4 cut(s) 102, 142, 354, 437
Lsp1109I GCAGC 5 cut(s) 496, 676, 917, 997, 1084
LweI GCATC 5 cut(s) 265, 481, 709, 750, 1144
MaeI CTAG 3 cut(s) 272, 302, 881
MaeII ACGT 2 cut(s) 125, 1122
MaeIII GTNAC 1 cut(s) 863
MalI GATC 6 cut(s) 111, 259, 308, 600, 663, 840
MboI GATC 6 cut(s) 109, 257, 306, 598, 661, 838
MboII GAAGA 2 cut(s) 833, 929
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 3 cut(s) 99, 147, 784
MluCI AATT 2 cut(s) 251, 1101
MlyI GAGTC 2 cut(s) 162, 440
MroNI GCCGGC 1 cut(s) 215
MseI TTAA 3 cut(s) 186, 885, 956
MslI CAYNNNNRTG 1 cut(s) 1054
MspI CCGG 4 cut(s) 100, 118, 216, 389
MspR9I CCNGG 3 cut(s) 119, 390, 1053
MvaI CCWGG 1 cut(s) 1053
MvnI CGCG 2 cut(s) 56, 65
MwoI GCNNNNNNNGC 2 cut(s) 62, 65
NaeI GCCGGC 1 cut(s) 217
NciI CCSGG 2 cut(s) 119, 390
NdeII GATC 6 cut(s) 109, 257, 306, 598, 661, 838
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 622, 637
NlaIV GGNNCC 3 cut(s) 98, 945, 1164
NmeAIII GCCGAG 1 cut(s) 150
OliI CACNNNNGTG 1 cut(s) 1054
PaeR7I CTCGAG 1 cut(s) 672
PceI AGGCCT 2 cut(s) 325, 746
PdiI GCCGGC 1 cut(s) 217
PkrI GCNGC 7 cut(s) 58, 67, 511, 691, 932, 1012, 1099
PleI GAGTC 2 cut(s) 162, 439
PpsI GAGTC 2 cut(s) 162, 439
PpuMI RGGWCCY 1 cut(s) 1162
PsiI TTATAA 2 cut(s) 227, 531
Psp5II RGGWCCY 1 cut(s) 1162
Psp6I CCWGG 1 cut(s) 1051
PspGI CCWGG 1 cut(s) 1051
PspN4I GGNNCC 3 cut(s) 98, 945, 1164
PspPI GGNCC 3 cut(s) 356, 383, 1162
PspPPI RGGWCCY 1 cut(s) 1162
PspXI VCTCGAGB 1 cut(s) 672
PstI CTGCAG 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 4 cut(s) 48, 53, 394, 910
RsaNI GTAC 4 cut(s) 47, 52, 393, 909
RseI CAYNNNNRTG 1 cut(s) 1054
SaqAI TTAA 3 cut(s) 186, 885, 956
SatI GCNGC 7 cut(s) 57, 66, 510, 690, 931, 1011, 1098
Sau3AI GATC 6 cut(s) 109, 257, 306, 598, 661, 838
Sau96I GGNCC 3 cut(s) 356, 383, 1162
SbfI CCTGCAGG 1 cut(s) 39
SchI GAGTC 2 cut(s) 162, 440
ScrFI CCNGG 3 cut(s) 119, 390, 1053
SdaI CCTGCAGG 1 cut(s) 39
SduI GDGCHC 3 cut(s) 99, 147, 784
SfaNI GCATC 5 cut(s) 265, 481, 709, 750, 1144
SfcI CTRYAG 3 cut(s) 35, 594, 657
Sfr274I CTCGAG 1 cut(s) 672
SinI GGWCC 3 cut(s) 356, 383, 1162
SlaI CTCGAG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 1054
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
SpeI ACTAGT 1 cut(s) 301
Sse8387I CCTGCAGG 1 cut(s) 39
Sse9I AATT 2 cut(s) 251, 1101
SseBI AGGCCT 2 cut(s) 325, 746
SsiI CCGC 4 cut(s) 56, 65, 179, 386
SspI AATATT 2 cut(s) 829, 1144
SspMI CTAG 3 cut(s) 272, 302, 881
StuI AGGCCT 2 cut(s) 325, 746
StyD4I CCNGG 3 cut(s) 117, 388, 1051
StyI CCWWGG 2 cut(s) 352, 947
TaaI ACNGT 2 cut(s) 51, 871
TaiI ACGT 2 cut(s) 128, 1125
TaqI TCGA 2 cut(s) 673, 1061
TasI AATT 2 cut(s) 251, 1101
TatI WGTACW 1 cut(s) 908
TauI GCSGC 2 cut(s) 59, 68
Tru1I TTAA 3 cut(s) 186, 885, 956
Tru9I TTAA 3 cut(s) 186, 885, 956
TseI GCWGC 5 cut(s) 509, 689, 930, 1010, 1097
TspDTI ATGAA 4 cut(s) 312, 436, 622, 635
TspGWI ACGGA 1 cut(s) 693
VpaK11BI GGWCC 3 cut(s) 356, 383, 1162
XapI RAATTY 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 672
XspI CTAG 3 cut(s) 272, 302, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.