pycom07g26910

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010923
Physical Location & Seq
Reverse (-)
26769684 .. 26772263
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26910.3

Sequence Viewer

Length: 1185 bp
ATGGGAGGTTCAGGGGAGAGGGAGACCAAGTTTCTGCAGGAACTGATACTGTACGCGGCGAGCGCGGCGTTGAGTTGCTTGGTTTTGTTCGCGGGGCTCCGGCATCTCGACCCGAACCGGGAGGCGTCAAAGAAGGCGATGGAGCACAAGAAGGAAATCTCCAAGCGACTCGGCCGCCCCCTTATTAACACCAATTCTTATGAGGATGTTATAGCCTGCGATGTAATAAACCCCGACCACATTAAAGTAGAATTTGAATCTATTGGAGGACTGGAAGCTATAAAGGAAGCCTTGTATGAACTAGTGATCCTTCCGCTACAGAGGCCTAATTTGTTTTCCCATGGGAAGCTCCTTGGTCCACAAAAAGGTGTCTTGCTGTATGGACCACCAGGTACTGGAAAGACTATGCTTGCCAAAGCTATTGCAAAGGAGTCTGGAGCTGTTTTCATCAATGTCAGGATATCAAATCGGATGAGCAAATGGTTTGGTGATGCACAAAAGCTCGTTGCTGCTGTATTTAGCTTGGCTTATAAACTCCAGCCTGCTATCATATTTATTGATGAGGTTGATAGTTTCTTGGGTCAGCGCCGAAATACAGATCATGAGGCATTAACAAACATGAAAACTGAGTTCATGGCATTATGGGATGGCTTTACTACAGATCAGAATGCTCGAGTTATGGTTCTTGCTGCTACTAATCGTCCGTCAGAACTTGATGAAGCAATACTTCGTCGTCTTCCTCAGGCCTTTGAGATTGGGATACCCAATCAAAGAGAGAGGGCTGACATACTAAAGGTGATTTTGAAGGGCGAGAGAGTTGAAGACAATATTGATTATGACCGTTTAGCCGTCTTGTCTGAGGGTTACACAGGTTCGGATCTTCTTGAGCTTTGCAAGAAAGCAGCCTATTGTCCTATCAGAGACCTACTAAATGAAGAAAAGAACGGGAAGAAATCTTCCGCAACAAGGCCATTTACCCAGTTAGATTTGGAAAATGTTCTCGCAACGTCCAAACATACAAAGGTTGCTGCAAATGACTATACTGGCTTGATCTCATCACAATCATCACCAGGGTGGTCAAGGAACAGAGAGACGGGTGATTATCCAGTTCAAGCTGCAATTAATGAGCTTACGAGGCACGTGGTCCAAATCTTGAATATTCAACCTGATGCACAGGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

395

Amino Acids

43.76

Weight (kDa)

6.43

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27680 AT5G53540
fragaria_vesca FvH4_7g32510
malus_domestica MD01G1225800.v1.1 MD07G1296300.v1.1
prunus_persica Prupe.2G315900_v2.0.a1
pyrus_communis pycom01g23430 pycom07g26910
rosa_chinensis RchiOBHm_Chr1g0382351
rosa_laevigata RLG00000026184
rosa_multiflora Rmu_sc0000110.1_g000041 Rmu_sc0006177.1_g000002 Rmu_sc0028160.1_g000002
rosa_roxburghii Rroxscaffold_4G00278170
rosa_rugosa Rorug01G0433600
rosa_samantha Rh1AG458300 Rh1BG414600 Rh1CG428700 Rh1DG446700
rosa_wichuraiana Rw1G041270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccB7I CCANNNNNTGG 1 cut(s) 395
AccII CGCG 3 cut(s) 56, 65, 92
AciI CCGC 6 cut(s) 56, 65, 92, 175, 314, 960
AclWI GGATC 2 cut(s) 301, 885
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 251
AcvI CACGTG 1 cut(s) 1141
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 2 cut(s) 53, 394
AfiI CCNNNNNNNGG 4 cut(s) 118, 365, 395, 966
AgsI TTSAA 6 cut(s) 257, 805, 821, 1112, 1156, 1163
AhlI ACTAGT 1 cut(s) 301
AjnI CCWGG 2 cut(s) 388, 1069
AleI CACNNNNGTG 1 cut(s) 1072
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 9 cut(s) 278, 349, 419, 440, 502, 522, 889, 1115, 1129
AluI AGCT 9 cut(s) 278, 349, 419, 440, 502, 522, 889, 1115, 1129
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 3 cut(s) 17, 915, 1085
AlwI GGATC 2 cut(s) 301, 885
AlwNI CAGNNNCTG 2 cut(s) 43, 395
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 4 cut(s) 172, 323, 744, 968
ApeKI GCWGC 5 cut(s) 509, 689, 902, 1028, 1115
ApoI RAATTY 1 cut(s) 251
AseI ATTAAT 1 cut(s) 1122
Asp700I GAANNNNTTC 1 cut(s) 996
AspLEI GCGC 2 cut(s) 65, 588
AspS9I GGNCC 4 cut(s) 356, 383, 1144, 1177
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 4 cut(s) 500, 808, 1059, 1109
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 4 cut(s) 356, 383, 1144, 1177
AxyI CCTNAGG 1 cut(s) 741
BanII GRGCYC 1 cut(s) 99
BbrPI CACGTG 1 cut(s) 1141
BbsI GAAGAC 2 cut(s) 728, 828
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 5 cut(s) 496, 676, 914, 1015, 1102
BccI CCATC 2 cut(s) 133, 641
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 2 cut(s) 390, 1071
BciVI GTATCC 1 cut(s) 753
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 3 cut(s) 17, 915, 1085
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 3 cut(s) 35, 317, 657
BfoI RGCGCY 1 cut(s) 589
BfuI GTATCC 1 cut(s) 753
BisI GCNGC 8 cut(s) 57, 66, 175, 510, 690, 903, 1029, 1116
BlsI GCNGC 8 cut(s) 58, 67, 176, 511, 691, 904, 1030, 1117
Bme1390I CCNGG 3 cut(s) 119, 390, 1071
Bme18I GGWCC 4 cut(s) 356, 383, 1144, 1177
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 4 cut(s) 356, 383, 1144, 1177
BmiI GGNNCC 2 cut(s) 98, 1179
BmrFI CCNGG 3 cut(s) 119, 390, 1071
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 3 cut(s) 112, 481, 1159
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 2 cut(s) 728, 828
BpmI CTGGAG 2 cut(s) 456, 521
BpuEI CTTGAG 1 cut(s) 905
BpuMI CCSGG 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 1141
BsaHI GRCGYC 1 cut(s) 125
BsaI GGTCTC 2 cut(s) 17, 915
BsaJI CCNNGG 3 cut(s) 340, 352, 1070
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 365, 395, 966
Bse1I ACTGG 5 cut(s) 276, 400, 979, 1048, 1106
Bse21I CCTNAGG 1 cut(s) 741
BseBI CCWGG 2 cut(s) 390, 1071
BseDI CCNNGG 3 cut(s) 340, 352, 1070
BseGI GGATG 3 cut(s) 211, 477, 652
BseLI CCNNNNNNNGG 4 cut(s) 118, 365, 395, 966
BseMII CTCAG 3 cut(s) 618, 755, 849
BseNI ACTGG 5 cut(s) 276, 400, 979, 1048, 1106
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 5 cut(s) 496, 676, 914, 1015, 1102
Bsh1236I CGCG 3 cut(s) 56, 65, 92
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 4 cut(s) 174, 325, 746, 970
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 2 cut(s) 100, 118
BslI CCNNNNNNNGG 4 cut(s) 118, 365, 395, 966
BsmAI GTCTC 3 cut(s) 17, 915, 1085
BsmBI CGTCTC 1 cut(s) 1085
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 4 cut(s) 174, 325, 746, 970
Bso31I GGTCTC 2 cut(s) 17, 915
BsoBI CYCGRG 1 cut(s) 672
Bsp1286I GDGCHC 2 cut(s) 99, 147
Bsp143I GATC 5 cut(s) 306, 598, 661, 877, 1050
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 6 cut(s) 56, 65, 92, 175, 314, 960
BspANI GGCC 4 cut(s) 174, 325, 746, 970
BspCNI CTCAG 3 cut(s) 619, 754, 850
BspFNI CGCG 3 cut(s) 56, 65, 92
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 2 cut(s) 98, 1179
BspMAI CTGCAG 1 cut(s) 39
BspPI GGATC 2 cut(s) 301, 885
BspTNI GGTCTC 2 cut(s) 17, 915
BsrI ACTGG 5 cut(s) 276, 400, 979, 1048, 1106
BssECI CCNNGG 3 cut(s) 340, 352, 1070
BssMI GATC 5 cut(s) 306, 598, 661, 877, 1050
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 2 cut(s) 340, 352
Bst2UI CCWGG 2 cut(s) 390, 1071
Bst4CI ACNGT 2 cut(s) 51, 842
BstACI GRCGYC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 1141
BstC8I GCNNGC 4 cut(s) 61, 217, 411, 543
BstDEI CTNAG 3 cut(s) 627, 741, 858
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 3 cut(s) 211, 477, 652
BstFNI CGCG 3 cut(s) 56, 65, 92
BstH2I RGCGCY 1 cut(s) 589
BstHHI GCGC 2 cut(s) 65, 588
BstKTI GATC 5 cut(s) 309, 601, 664, 880, 1053
BstMAI GTCTC 3 cut(s) 17, 915, 1085
BstMBI GATC 5 cut(s) 306, 598, 661, 877, 1050
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 62, 65, 322, 1135
BstNI CCWGG 2 cut(s) 390, 1071
BstSCI CCNGG 3 cut(s) 117, 388, 1069
BstSFI CTRYAG 3 cut(s) 35, 317, 657
BstUI CGCG 3 cut(s) 56, 65, 92
BstV1I GCAGC 5 cut(s) 496, 676, 914, 1015, 1102
BstV2I GAAGAC 2 cut(s) 728, 828
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BstZI CGGCCG 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 741
BsuI GTATCC 1 cut(s) 753
BsuRI GGCC 4 cut(s) 174, 325, 746, 970
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 2 cut(s) 152, 234
BtsCI GGATG 3 cut(s) 211, 477, 652
Cac8I GCNNGC 4 cut(s) 61, 217, 411, 543
CaiI CAGNNNCTG 2 cut(s) 43, 395
CciI TCATGA 1 cut(s) 601
CfoI GCGC 2 cut(s) 65, 588
Cfr13I GGNCC 4 cut(s) 356, 383, 1144, 1177
CseI GACGC 1 cut(s) 114
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 2 cut(s) 52, 393
CviAII CATG 4 cut(s) 341, 602, 619, 634
CviQI GTAC 2 cut(s) 52, 393
DdeI CTNAG 3 cut(s) 627, 741, 858
DpnI GATC 5 cut(s) 308, 600, 663, 879, 1052
DpnII GATC 5 cut(s) 306, 598, 661, 877, 1050
EaeI YGGCCR 1 cut(s) 172
EagI CGGCCG 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 340, 352
Eco147I AGGCCT 2 cut(s) 325, 746
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 2 cut(s) 17, 915
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 4 cut(s) 356, 383, 1144, 1177
Eco52I CGGCCG 1 cut(s) 172
Eco72I CACGTG 1 cut(s) 1141
Eco81I CCTNAGG 1 cut(s) 741
Eco88I CYCGRG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 1177
EcoRII CCWGG 2 cut(s) 388, 1069
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 2 cut(s) 340, 352
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 340, 352
Esp3I CGTCTC 1 cut(s) 1085
FaeI CATG 4 cut(s) 344, 605, 622, 637
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 711, 743
FatI CATG 4 cut(s) 340, 601, 618, 633
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 8 cut(s) 57, 66, 175, 510, 690, 903, 1029, 1116
FokI GGATG 3 cut(s) 218, 484, 659
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 8 cut(s) 57, 66, 175, 510, 690, 903, 1029, 1116
FspBI CTAG 1 cut(s) 302
GlaI GCGC 2 cut(s) 64, 587
GluI GCNGC 8 cut(s) 57, 66, 175, 510, 690, 903, 1029, 1116
GsuI CTGGAG 2 cut(s) 456, 521
HaeII RGCGCY 1 cut(s) 589
HaeIII GGCC 4 cut(s) 174, 325, 746, 970
HapII CCGG 2 cut(s) 100, 118
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 65, 588
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 4 cut(s) 344, 605, 622, 637
Hin6I GCGC 2 cut(s) 63, 586
HinP1I GCGC 2 cut(s) 63, 586
HinfI GANTC 3 cut(s) 168, 257, 431
HpaII CCGG 2 cut(s) 100, 118
HphI GGTGA 4 cut(s) 500, 808, 1059, 1109
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 6 cut(s) 471, 666, 709, 859, 877, 920
Hpy188III TCNNGA 6 cut(s) 107, 435, 457, 602, 884, 1153
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 735
HpyAV CCTTC 4 cut(s) 127, 145, 320, 799
HpyCH4III ACNGT 2 cut(s) 51, 842
HpyCH4IV ACGT 2 cut(s) 1007, 1140
HpyCH4V TGCA 7 cut(s) 37, 425, 494, 894, 1031, 1118, 1172
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 65, 322, 1135
HpyF3I CTNAG 3 cut(s) 627, 741, 858
HpySE526I ACGT 2 cut(s) 1007, 1140
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 4 cut(s) 344, 605, 622, 637
HspAI GCGC 2 cut(s) 63, 586
Kzo9I GATC 5 cut(s) 306, 598, 661, 877, 1050
LmnI GCTCC 4 cut(s) 102, 142, 354, 437
Lsp1109I GCAGC 5 cut(s) 496, 676, 914, 1015, 1102
LweI GCATC 3 cut(s) 112, 481, 1159
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 1007, 1140
MaeIII GTNAC 1 cut(s) 863
MalI GATC 5 cut(s) 308, 600, 663, 879, 1052
MboI GATC 5 cut(s) 306, 598, 661, 877, 1050
MboII GAAGA 6 cut(s) 728, 833, 872, 947, 948, 961
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 2 cut(s) 99, 147
MluCI AATT 4 cut(s) 193, 251, 328, 1119
MlyI GAGTC 2 cut(s) 162, 440
MroXI GAANNNNTTC 1 cut(s) 996
MseI TTAA 4 cut(s) 186, 243, 611, 1122
MslI CAYNNNNRTG 1 cut(s) 1072
MspI CCGG 2 cut(s) 100, 118
MspR9I CCNGG 3 cut(s) 119, 390, 1071
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 2 cut(s) 390, 1071
MvnI CGCG 3 cut(s) 56, 65, 92
MwoI GCNNNNNNNGC 4 cut(s) 62, 65, 322, 1135
NciI CCSGG 1 cut(s) 119
NcoI CCATGG 1 cut(s) 340
NdeII GATC 5 cut(s) 306, 598, 661, 877, 1050
NlaIII CATG 4 cut(s) 344, 605, 622, 637
NlaIV GGNNCC 2 cut(s) 98, 1179
NmeAIII GCCGAG 1 cut(s) 150
OliI CACNNNNGTG 1 cut(s) 1072
PaeR7I CTCGAG 1 cut(s) 672
PagI TCATGA 1 cut(s) 601
PceI AGGCCT 2 cut(s) 325, 746
PctI GAATGC 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 996
PfeI GAWTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 8 cut(s) 58, 67, 176, 511, 691, 904, 1030, 1117
PleI GAGTC 2 cut(s) 162, 439
PmaCI CACGTG 1 cut(s) 1141
PmlI CACGTG 1 cut(s) 1141
PpsI GAGTC 2 cut(s) 162, 439
Ppu21I YACGTR 1 cut(s) 1141
PpuMI RGGWCCY 1 cut(s) 1177
PshBI ATTAAT 1 cut(s) 1122
PsiI TTATAA 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 1177
Psp6I CCWGG 2 cut(s) 388, 1069
PspCI CACGTG 1 cut(s) 1141
PspGI CCWGG 2 cut(s) 388, 1069
PspN4I GGNNCC 2 cut(s) 98, 1179
PspPI GGNCC 4 cut(s) 356, 383, 1144, 1177
PspPPI RGGWCCY 1 cut(s) 1177
PspXI VCTCGAGB 1 cut(s) 672
PstI CTGCAG 1 cut(s) 39
PstNI CAGNNNCTG 2 cut(s) 43, 395
PsuI RGATCY 1 cut(s) 877
RsaI GTAC 2 cut(s) 53, 394
RsaNI GTAC 2 cut(s) 52, 393
RseI CAYNNNNRTG 1 cut(s) 1072
SaqAI TTAA 4 cut(s) 186, 243, 611, 1122
SatI GCNGC 8 cut(s) 57, 66, 175, 510, 690, 903, 1029, 1116
Sau3AI GATC 5 cut(s) 306, 598, 661, 877, 1050
Sau96I GGNCC 4 cut(s) 356, 383, 1144, 1177
SchI GAGTC 2 cut(s) 162, 440
ScrFI CCNGG 3 cut(s) 119, 390, 1071
SduI GDGCHC 2 cut(s) 99, 147
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 3 cut(s) 112, 481, 1159
SfcI CTRYAG 3 cut(s) 35, 317, 657
Sfr274I CTCGAG 1 cut(s) 672
SinI GGWCC 4 cut(s) 356, 383, 1144, 1177
SlaI CTCGAG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 1072
SmlI CTYRAG 2 cut(s) 672, 884
SmoI CTYRAG 2 cut(s) 672, 884
SpeI ACTAGT 1 cut(s) 301
Sse9I AATT 4 cut(s) 193, 251, 328, 1119
SseBI AGGCCT 2 cut(s) 325, 746
SsiI CCGC 6 cut(s) 56, 65, 92, 175, 314, 960
SspI AATATT 2 cut(s) 829, 1159
SspMI CTAG 1 cut(s) 302
StuI AGGCCT 2 cut(s) 325, 746
StyD4I CCNGG 3 cut(s) 117, 388, 1069
StyI CCWWGG 2 cut(s) 340, 352
TaaI ACNGT 2 cut(s) 51, 842
TaiI ACGT 2 cut(s) 1010, 1143
TaqI TCGA 2 cut(s) 108, 673
TasI AATT 4 cut(s) 193, 251, 328, 1119
TauI GCSGC 3 cut(s) 59, 68, 177
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 4 cut(s) 186, 243, 611, 1122
Tru9I TTAA 4 cut(s) 186, 243, 611, 1122
TseI GCWGC 5 cut(s) 509, 689, 902, 1028, 1115
TspDTI ATGAA 6 cut(s) 312, 436, 622, 635, 732, 948
TspGWI ACGGA 1 cut(s) 693
Van91I CCANNNNNTGG 1 cut(s) 395
VpaK11BI GGWCC 4 cut(s) 356, 383, 1144, 1177
VspI ATTAAT 1 cut(s) 1122
XapI RAATTY 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.