Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028160.1

Orthogroup ID

OG0010923

Physical Location & Seq

Genomic Coordinates Forward (+)

2803 .. 3651

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028160.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggcgtcgcagagggaaaccaagttcctgcaggagctcattctctacgccgcgagcgccgccatgagctgcctggttctgttcgtggggctccgacacctcgacccgaaccgcgaggcctccaagaaggccatggagcacaagaaggaaatcgctaggcgcctcggccgtcctctcattcacaccaatccttatgaggatgtcatagcgtgcgatgttataaaccctgaccacattgatgtggagtttaactccattggaggactggaggctataaaggaagcattgtttgaactggtgattcttccactgaaaaggccggacctctttaaccatgggaaactccttggtccacaaaagggagtcttgttgtacggaccaccgggtactgggaagactatgcttgctaaagctattgcaaaggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

142

Amino Acids

15.73

Weight (kDa)

8.55

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27680 AT5G53540
fragaria_vesca	FvH4_7g32510
malus_domestica	MD01G1225800.v1.1 MD07G1296300.v1.1
prunus_persica	Prupe.2G315900_v2.0.a1
pyrus_communis	pycom01g23430 pycom07g26910
rosa_chinensis	RchiOBHm_Chr1g0382351
rosa_laevigata	RLG00000026184
rosa_multiflora	Rmu_sc0000110.1_g000041 Rmu_sc0006177.1_g000002 Rmu_sc0028160.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278170
rosa_rugosa	Rorug01G0433600
rosa_samantha	Rh1AG458300 Rh1BG414600 Rh1CG428700 Rh1DG446700
rosa_wichuraiana	Rw1G041270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	2 cut(s)	53, 114
AciI	CCGC	3 cut(s)	51, 60, 112
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	2 cut(s)	5, 160
AfaI	GTAC	2 cut(s)	374, 388
AfiI	CCNNNNNNNGG	2 cut(s)	359, 389
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	72
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	37, 69, 413
AluI	AGCT	3 cut(s)	37, 69, 413
Alw21I	GWGCWC	2 cut(s)	39, 141
AoxI	GGCC	4 cut(s)	117, 129, 166, 317
ApeKI	GCWGC	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	59, 162
AspS9I	GGNCC	3 cut(s)	322, 350, 377
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	3 cut(s)	322, 350, 377
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	2 cut(s)	39, 93
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	2 cut(s)	39, 141
BbvI	GCAGC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	384
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	29
BfoI	RGCGCY	2 cut(s)	60, 163
BisI	GCNGC	3 cut(s)	51, 60, 70
BlsI	GCNGC	3 cut(s)	52, 61, 71
Bme1390I	CCNGG	2 cut(s)	74, 384
Bme18I	GGWCC	3 cut(s)	322, 350, 377
BmgT120I	GGNCC	3 cut(s)	322, 350, 377
BmiI	GGNNCC	2 cut(s)	92, 161
BmrFI	CCNGG	2 cut(s)	74, 384
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	401
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	384
BsaHI	GRCGYC	2 cut(s)	5, 160
BsaJI	CCNNGG	4 cut(s)	132, 163, 334, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 389
Bse1I	ACTGG	3 cut(s)	270, 300, 394
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	4 cut(s)	132, 163, 334, 346
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	359, 389
BseNI	ACTGG	3 cut(s)	270, 300, 394
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	56
Bsh1236I	CGCG	2 cut(s)	53, 114
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	4 cut(s)	119, 131, 168, 319
BshNI	GGYRCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	39, 141
BsiSI	CCGG	2 cut(s)	320, 383
BslI	CCNNNNNNNGG	2 cut(s)	359, 389
BsnI	GGCC	4 cut(s)	119, 131, 168, 319
Bsp1286I	GDGCHC	3 cut(s)	39, 93, 141
Bsp19I	CCATGG	2 cut(s)	132, 334
BspACI	CCGC	3 cut(s)	51, 60, 112
BspANI	GGCC	4 cut(s)	119, 131, 168, 319
BspFNI	CGCG	2 cut(s)	53, 114
BspLI	GGNNCC	2 cut(s)	92, 161
BspMAI	CTGCAG	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	270, 300, 394
BssECI	CCNNGG	4 cut(s)	132, 163, 334, 346
BssNI	GRCGYC	2 cut(s)	5, 160
BssT1I	CCWWGG	3 cut(s)	132, 334, 346
Bst2UI	CCWGG	1 cut(s)	74
BstACI	GRCGYC	2 cut(s)	5, 160
BstC8I	GCNNGC	3 cut(s)	55, 211, 405
BstDSI	CCRYGG	2 cut(s)	132, 334
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	53, 114
BstH2I	RGCGCY	2 cut(s)	60, 163
BstHHI	GCGC	2 cut(s)	59, 162
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 59
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	72, 382
BstSFI	CTRYAG	1 cut(s)	29
BstUI	CGCG	2 cut(s)	53, 114
BstV1I	GCAGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	401
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	119, 131, 168, 319
BtgI	CCRYGG	2 cut(s)	132, 334
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	55, 211, 405
CfoI	GCGC	2 cut(s)	59, 162
Cfr13I	GGNCC	3 cut(s)	322, 350, 377
Csp6I	GTAC	2 cut(s)	373, 387
CviAII	CATG	3 cut(s)	64, 133, 335
CviJI	RGCY	9 cut(s)	37, 69, 91, 119, 131, 168, 272, 319, 413
CviKI_1	RGCY	9 cut(s)	37, 69, 91, 119, 131, 168, 272, 319, 413
CviQI	GTAC	2 cut(s)	373, 387
DinI	GGCGCC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	37
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	3 cut(s)	132, 334, 346
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	39, 93
Eco47I	GGWCC	3 cut(s)	322, 350, 377
Eco52I	CGGCCG	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	3 cut(s)	132, 334, 346
EcoT38I	GRGCYC	2 cut(s)	39, 93
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
ErhI	CCWWGG	3 cut(s)	132, 334, 346
FaeI	CATG	3 cut(s)	67, 136, 338
FaiI	YATR	8 cut(s)	65, 134, 195, 206, 221, 275, 336, 401
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	3 cut(s)	63, 132, 334
Fnu4HI	GCNGC	3 cut(s)	51, 60, 70
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	2 cut(s)	39, 93
Fsp4HI	GCNGC	3 cut(s)	51, 60, 70
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	2 cut(s)	58, 161
GluI	GCNGC	3 cut(s)	51, 60, 70
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	60, 163
HaeIII	GGCC	4 cut(s)	119, 131, 168, 319
HapII	CCGG	2 cut(s)	320, 383
HhaI	GCGC	2 cut(s)	59, 162
Hin1I	GRCGYC	2 cut(s)	5, 160
Hin1II	CATG	3 cut(s)	67, 136, 338
Hin6I	GCGC	2 cut(s)	57, 160
HinP1I	GCGC	2 cut(s)	57, 160
HinfI	GANTC	2 cut(s)	301, 363
HpaII	CCGG	2 cut(s)	320, 383
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	121, 139
HpyCH4V	TGCA	2 cut(s)	31, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 59
Hsp92I	GRCGYC	2 cut(s)	5, 160
Hsp92II	CATG	3 cut(s)	67, 136, 338
HspAI	GCGC	2 cut(s)	57, 160
KasI	GGCGCC	1 cut(s)	159
LmnI	GCTCC	3 cut(s)	34, 96, 136
Lsp1109I	GCAGC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	156
MboII	GAAGA	2 cut(s)	296, 406
MhlI	GDGCHC	3 cut(s)	39, 93, 141
Mly113I	GGCGCC	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	118
MseI	TTAA	2 cut(s)	249, 330
MslI	CAYNNNNRTG	2 cut(s)	237, 239
MspI	CCGG	2 cut(s)	320, 383
MspR9I	CCNGG	2 cut(s)	74, 384
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	53, 114
MwoI	GCNNNNNNNGC	2 cut(s)	56, 59
NarI	GGCGCC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	384
NcoI	CCATGG	2 cut(s)	132, 334
NlaIII	CATG	3 cut(s)	67, 136, 338
NlaIV	GGNNCC	2 cut(s)	92, 161
NmeAIII	GCCGAG	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	52, 61, 71
PleI	GAGTC	1 cut(s)	371
PluTI	GGCGCC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	92, 161
PspPI	GGNCC	3 cut(s)	322, 350, 377
PstI	CTGCAG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	374, 388
RsaNI	GTAC	2 cut(s)	373, 387
RseI	CAYNNNNRTG	2 cut(s)	237, 239
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	249, 330
SatI	GCNGC	3 cut(s)	51, 60, 70
Sau96I	GGNCC	3 cut(s)	322, 350, 377
SbfI	CCTGCAGG	1 cut(s)	33
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	74, 384
SdaI	CCTGCAGG	1 cut(s)	33
SduI	GDGCHC	3 cut(s)	39, 93, 141
SetI	ASST	5 cut(s)	39, 71, 102, 327, 415
SfcI	CTRYAG	1 cut(s)	29
SfoI	GGCGCC	1 cut(s)	161
SinI	GGWCC	3 cut(s)	322, 350, 377
SmiMI	CAYNNNNRTG	2 cut(s)	237, 239
Sse8387I	CCTGCAGG	1 cut(s)	33
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	51, 60, 112
SspDI	GGCGCC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	72, 382
StyI	CCWWGG	3 cut(s)	132, 334, 346
TaqI	TCGA	1 cut(s)	102
TauI	GCSGC	2 cut(s)	53, 62
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	249, 330
Tru9I	TTAA	2 cut(s)	249, 330
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	3 cut(s)	322, 350, 377
XcmI	CCANNNNNNNNNTGG	3 cut(s)	70, 130, 262
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.