Rmu_sc0006177.1_g000002

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006177.1
OG0010923
Physical Location & Seq
Reverse (-)
1 .. 2444
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006177.1_g000002.1.cds

Sequence Viewer

Length: 658 bp
atggcgtcgcagagggaaaccaagttcctgcaggagctcattctctacgccgcgagcgccgccatgagctgcctggttctgttcgtggggctccgacacctcgacccgaaccgcgaggcctccaagaaggccatggagcacaagaaggaaatcgctaggcgcctcggccgtcctctcattcacaccaatccttatgaggatgtcatagcgtgcgatgttataaaccctgaccacattgatgtggagtttaactccattggaggactggaggctataaaggaagcattgtttgaactggtgattcttccactgaaaaggccggacctctttaaccatgggaaactccttggtccacaaaagggagtcttgttgtacggaccaccgggtactgggaagactatgcttgctaaagctattgcaaaggagtctggagctgttttcattaatgttaggatatcaaacctgatgagcaaatggtttggtgatgcacaaaaacttgtttctgctgtgtttagcttggctcataaactccagcctgctatcatatttatcgacgaggttgatagtttcttgggacagcgccgtactacagagcatgaagcgttaacaaacatgaaaactgagttcatggctttgtgggatgggtttactacagacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

7.06

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27680 AT5G53540
fragaria_vesca FvH4_7g32510
malus_domestica MD01G1225800.v1.1 MD07G1296300.v1.1
prunus_persica Prupe.2G315900_v2.0.a1
pyrus_communis pycom01g23430 pycom07g26910
rosa_chinensis RchiOBHm_Chr1g0382351
rosa_laevigata RLG00000026184
rosa_multiflora Rmu_sc0000110.1_g000041 Rmu_sc0006177.1_g000002 Rmu_sc0028160.1_g000002
rosa_roxburghii Rroxscaffold_4G00278170
rosa_rugosa Rorug01G0433600
rosa_samantha Rh1AG458300 Rh1BG414600 Rh1CG428700 Rh1DG446700
rosa_wichuraiana Rw1G041270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 159
AccII CGCG 2 cut(s) 53, 114
AciI CCGC 3 cut(s) 51, 60, 112
AcoI YGGCCR 1 cut(s) 166
AcyI GRCGYC 2 cut(s) 5, 160
AfaI GTAC 3 cut(s) 374, 388, 586
AfiI CCNNNNNNNGG 2 cut(s) 359, 389
AgsI TTSAA 1 cut(s) 293
AjnI CCWGG 1 cut(s) 72
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 5 cut(s) 37, 69, 413, 434, 516
AluI AGCT 5 cut(s) 37, 69, 413, 434, 516
Alw21I GWGCWC 2 cut(s) 39, 141
AoxI GGCC 4 cut(s) 117, 129, 166, 317
ApeKI GCWGC 1 cut(s) 69
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 3 cut(s) 59, 162, 582
AspS9I GGNCC 3 cut(s) 322, 350, 377
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 310, 494
AvaII GGWCC 3 cut(s) 322, 350, 377
BanI GGYRCC 1 cut(s) 159
BanII GRGCYC 2 cut(s) 39, 93
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 39, 141
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 635
BceAI ACGGC 2 cut(s) 153, 567
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 1 cut(s) 384
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 3 cut(s) 29, 588, 651
BfoI RGCGCY 3 cut(s) 60, 163, 583
BisI GCNGC 3 cut(s) 51, 60, 70
BlsI GCNGC 3 cut(s) 52, 61, 71
Bme1390I CCNGG 2 cut(s) 74, 384
Bme18I GGWCC 3 cut(s) 322, 350, 377
BmgT120I GGNCC 3 cut(s) 322, 350, 377
BmiI GGNNCC 2 cut(s) 92, 161
BmrFI CCNGG 2 cut(s) 74, 384
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 475
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 3 cut(s) 287, 450, 515
BpuMI CCSGG 1 cut(s) 384
BsaHI GRCGYC 2 cut(s) 5, 160
BsaJI CCNNGG 4 cut(s) 132, 163, 334, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 389
Bse1I ACTGG 3 cut(s) 270, 300, 394
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 4 cut(s) 132, 163, 334, 346
BseGI GGATG 2 cut(s) 205, 646
BseLI CCNNNNNNNGG 2 cut(s) 359, 389
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 3 cut(s) 270, 300, 394
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 56
Bsh1236I CGCG 2 cut(s) 53, 114
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 4 cut(s) 119, 131, 168, 319
BshNI GGYRCC 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 39, 141
BsiSI CCGG 2 cut(s) 320, 383
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 359, 389
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 4 cut(s) 119, 131, 168, 319
Bsp1286I GDGCHC 3 cut(s) 39, 93, 141
Bsp19I CCATGG 2 cut(s) 132, 334
BspACI CCGC 3 cut(s) 51, 60, 112
BspANI GGCC 4 cut(s) 119, 131, 168, 319
BspCNI CTCAG 1 cut(s) 613
BspFNI CGCG 2 cut(s) 53, 114
BspLI GGNNCC 2 cut(s) 92, 161
BspMAI CTGCAG 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 159
BsrI ACTGG 3 cut(s) 270, 300, 394
BssECI CCNNGG 4 cut(s) 132, 163, 334, 346
BssNI GRCGYC 2 cut(s) 5, 160
BssT1I CCWWGG 3 cut(s) 132, 334, 346
Bst2UI CCWGG 1 cut(s) 74
BstACI GRCGYC 2 cut(s) 5, 160
BstC8I GCNNGC 4 cut(s) 55, 211, 405, 537
BstDEI CTNAG 1 cut(s) 621
BstDSI CCRYGG 2 cut(s) 132, 334
BstF5I GGATG 2 cut(s) 205, 646
BstFNI CGCG 2 cut(s) 53, 114
BstH2I RGCGCY 3 cut(s) 60, 163, 583
BstHHI GCGC 3 cut(s) 59, 162, 582
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 56, 59
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 72, 382
BstSFI CTRYAG 3 cut(s) 29, 588, 651
BstUI CGCG 2 cut(s) 53, 114
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 401
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 4 cut(s) 119, 131, 168, 319
BtgI CCRYGG 2 cut(s) 132, 334
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 205, 646
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 4 cut(s) 55, 211, 405, 537
CfoI GCGC 3 cut(s) 59, 162, 582
Cfr13I GGNCC 3 cut(s) 322, 350, 377
Csp6I GTAC 3 cut(s) 373, 387, 585
CviAII CATG 6 cut(s) 64, 133, 335, 596, 613, 628
CviQI GTAC 3 cut(s) 373, 387, 585
DdeI CTNAG 1 cut(s) 621
DinI GGCGCC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 37
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 132, 334, 346
Eco147I AGGCCT 1 cut(s) 119
Eco24I GRGCYC 2 cut(s) 39, 93
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 322, 350, 377
Eco52I CGGCCG 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 3 cut(s) 132, 334, 346
EcoT38I GRGCYC 2 cut(s) 39, 93
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 3 cut(s) 132, 334, 346
FaeI CATG 6 cut(s) 67, 136, 338, 599, 616, 631
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 588
FatI CATG 6 cut(s) 63, 132, 334, 595, 612, 627
Fnu4HI GCNGC 3 cut(s) 51, 60, 70
FokI GGATG 2 cut(s) 212, 653
FriOI GRGCYC 2 cut(s) 39, 93
Fsp4HI GCNGC 3 cut(s) 51, 60, 70
FspBI CTAG 1 cut(s) 156
GlaI GCGC 3 cut(s) 58, 161, 581
GluI GCNGC 3 cut(s) 51, 60, 70
GsuI CTGGAG 3 cut(s) 287, 450, 515
HaeII RGCGCY 3 cut(s) 60, 163, 583
HaeIII GGCC 4 cut(s) 119, 131, 168, 319
HapII CCGG 2 cut(s) 320, 383
HhaI GCGC 3 cut(s) 59, 162, 582
Hin1I GRCGYC 2 cut(s) 5, 160
Hin1II CATG 6 cut(s) 67, 136, 338, 599, 616, 631
Hin6I GCGC 3 cut(s) 57, 160, 580
HinP1I GCGC 3 cut(s) 57, 160, 580
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 3 cut(s) 301, 363, 425
HpaI GTTAAC 1 cut(s) 606
HpaII CCGG 2 cut(s) 320, 383
HphI GGTGA 2 cut(s) 310, 494
Hpy166II GTNNAC 3 cut(s) 353, 606, 648
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 429
Hpy8I GTNNAC 3 cut(s) 353, 606, 648
Hpy99I CGWCG 2 cut(s) 10, 557
HpyAV CCTTC 2 cut(s) 121, 139
HpyCH4V TGCA 3 cut(s) 31, 419, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 59
HpyF3I CTNAG 1 cut(s) 621
Hsp92I GRCGYC 2 cut(s) 5, 160
Hsp92II CATG 6 cut(s) 67, 136, 338, 599, 616, 631
HspAI GCGC 3 cut(s) 57, 160, 580
KasI GGCGCC 1 cut(s) 159
KspAI GTTAAC 1 cut(s) 606
LmnI GCTCC 4 cut(s) 34, 96, 136, 431
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 156
MboII GAAGA 2 cut(s) 296, 406
MhlI GDGCHC 3 cut(s) 39, 93, 141
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 2 cut(s) 372, 434
MmeI TCCRAC 1 cut(s) 118
MseI TTAA 4 cut(s) 249, 330, 444, 605
MslI CAYNNNNRTG 2 cut(s) 237, 239
MspI CCGG 2 cut(s) 320, 383
MspR9I CCNGG 2 cut(s) 74, 384
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 53, 114
MwoI GCNNNNNNNGC 2 cut(s) 56, 59
NarI GGCGCC 1 cut(s) 160
NciI CCSGG 1 cut(s) 384
NcoI CCATGG 2 cut(s) 132, 334
NlaIII CATG 6 cut(s) 67, 136, 338, 599, 616, 631
NlaIV GGNNCC 2 cut(s) 92, 161
NmeAIII GCCGAG 1 cut(s) 144
PceI AGGCCT 1 cut(s) 119
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 52, 61, 71
PleI GAGTC 2 cut(s) 371, 433
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 2 cut(s) 371, 433
PshBI ATTAAT 1 cut(s) 444
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 92, 161
PspPI GGNCC 3 cut(s) 322, 350, 377
PstI CTGCAG 1 cut(s) 33
RsaI GTAC 3 cut(s) 374, 388, 586
RsaNI GTAC 3 cut(s) 373, 387, 585
RseI CAYNNNNRTG 2 cut(s) 237, 239
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 4 cut(s) 249, 330, 444, 605
SatI GCNGC 3 cut(s) 51, 60, 70
Sau96I GGNCC 3 cut(s) 322, 350, 377
SbfI CCTGCAGG 1 cut(s) 33
SchI GAGTC 2 cut(s) 372, 434
ScrFI CCNGG 2 cut(s) 74, 384
SdaI CCTGCAGG 1 cut(s) 33
SduI GDGCHC 3 cut(s) 39, 93, 141
SetI ASST 9 cut(s) 39, 71, 102, 327, 415, 436, 465, 518, 561
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 3 cut(s) 29, 588, 651
SfoI GGCGCC 1 cut(s) 161
SinI GGWCC 3 cut(s) 322, 350, 377
SmiMI CAYNNNNRTG 2 cut(s) 237, 239
Sse8387I CCTGCAGG 1 cut(s) 33
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 3 cut(s) 51, 60, 112
SspDI GGCGCC 1 cut(s) 159
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 72, 382
StyI CCWWGG 3 cut(s) 132, 334, 346
TaqI TCGA 2 cut(s) 102, 552
TauI GCSGC 2 cut(s) 53, 62
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 4 cut(s) 249, 330, 444, 605
Tru9I TTAA 4 cut(s) 249, 330, 444, 605
TscAI CASTG 1 cut(s) 315
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 4 cut(s) 430, 612, 616, 629
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 315
VpaK11BI GGWCC 3 cut(s) 322, 350, 377
VspI ATTAAT 1 cut(s) 444
XcmI CCANNNNNNNNNTGG 3 cut(s) 70, 130, 262
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.