Belongs to the AAA ATPase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G27680 AT5G53540 |
| fragaria_vesca | FvH4_7g32510 |
| malus_domestica | MD01G1225800.v1.1 MD07G1296300.v1.1 |
| prunus_persica | Prupe.2G315900_v2.0.a1 |
| pyrus_communis | pycom01g23430 pycom07g26910 |
| rosa_chinensis | RchiOBHm_Chr1g0382351 |
| rosa_laevigata | RLG00000026184 |
| rosa_multiflora | Rmu_sc0000110.1_g000041 Rmu_sc0006177.1_g000002 Rmu_sc0028160.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00278170 |
| rosa_rugosa | Rorug01G0433600 |
| rosa_samantha | Rh1AG458300 Rh1BG414600 Rh1CG428700 Rh1DG446700 |
| rosa_wichuraiana | Rw1G041270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 227, 531 |
| AccII | CGCG | 2 cut(s) | 56, 92 |
| AciI | CCGC | 3 cut(s) | 56, 66, 92 |
| AclWI | GGATC | 1 cut(s) | 301 |
| AcsI | RAATTY | 1 cut(s) | 251 |
| AcyI | GRCGYC | 1 cut(s) | 733 |
| AfaI | GTAC | 2 cut(s) | 53, 394 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 365, 395, 396, 771 |
| AgsI | TTSAA | 8 cut(s) | 245, 257, 299, 805, 821, 1051, 1162, 1169 |
| AhlI | ACTAGT | 1 cut(s) | 1141 |
| AjnI | CCWGG | 3 cut(s) | 1010, 1069, 1179 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 14, 46, 291, 323 |
| AluBI | AGCT | 9 cut(s) | 215, 349, 419, 440, 522, 848, 889, 905, 1132 |
| AluI | AGCT | 9 cut(s) | 215, 349, 419, 440, 522, 848, 889, 905, 1132 |
| Alw21I | GWGCWC | 2 cut(s) | 147, 1134 |
| Alw26I | GTCTC | 4 cut(s) | 17, 101, 915, 1083 |
| AlwI | GGATC | 1 cut(s) | 301 |
| Ama87I | CYCGRG | 1 cut(s) | 672 |
| AoxI | GGCC | 3 cut(s) | 323, 744, 968 |
| ApeKI | GCWGC | 4 cut(s) | 509, 689, 902, 1028 |
| ApoI | RAATTY | 1 cut(s) | 251 |
| AspLEI | GCGC | 2 cut(s) | 168, 588 |
| AspS9I | GGNCC | 3 cut(s) | 356, 383, 1183 |
| AsuC2I | CCSGG | 1 cut(s) | 390 |
| AsuHPI | GGTGA | 3 cut(s) | 316, 500, 808 |
| AvaI | CYCGRG | 1 cut(s) | 672 |
| AvaII | GGWCC | 3 cut(s) | 356, 383, 1183 |
| AxyI | CCTNAGG | 1 cut(s) | 741 |
| BanII | GRGCYC | 1 cut(s) | 1134 |
| BbsI | GAAGAC | 3 cut(s) | 407, 728, 828 |
| Bbv12I | GWGCWC | 2 cut(s) | 147, 1134 |
| BbvI | GCAGC | 4 cut(s) | 496, 676, 914, 1015 |
| BccI | CCATC | 2 cut(s) | 641, 712 |
| BciT130I | CCWGG | 3 cut(s) | 1012, 1071, 1181 |
| BciVI | GTATCC | 1 cut(s) | 771 |
| BcnI | CCSGG | 1 cut(s) | 390 |
| BcoDI | GTCTC | 4 cut(s) | 17, 101, 915, 1083 |
| BcuI | ACTAGT | 1 cut(s) | 1141 |
| BfaI | CTAG | 2 cut(s) | 929, 1142 |
| BfmI | CTRYAG | 2 cut(s) | 594, 657 |
| BfoI | RGCGCY | 2 cut(s) | 169, 589 |
| BfuI | GTATCC | 1 cut(s) | 771 |
| BglII | AGATCT | 2 cut(s) | 877, 953 |
| BisI | GCNGC | 6 cut(s) | 57, 66, 510, 690, 903, 1029 |
| BlpI | GCTNAGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 6 cut(s) | 58, 67, 511, 691, 904, 1030 |
| Bme1390I | CCNGG | 4 cut(s) | 390, 1012, 1071, 1181 |
| Bme18I | GGWCC | 3 cut(s) | 356, 383, 1183 |
| BmeT110I | CYCGRG | 1 cut(s) | 672 |
| BmgT120I | GGNCC | 3 cut(s) | 356, 383, 1183 |
| BmiI | GGNNCC | 1 cut(s) | 1185 |
| BmrFI | CCNGG | 4 cut(s) | 390, 1012, 1071, 1181 |
| BmrI | ACTGGG | 2 cut(s) | 405, 1053 |
| BmsI | GCATC | 4 cut(s) | 112, 481, 1108, 1165 |
| BmuI | ACTGGG | 2 cut(s) | 405, 1053 |
| BoxI | GACNNNNGTC | 1 cut(s) | 274 |
| BpiI | GAAGAC | 3 cut(s) | 407, 728, 828 |
| BpmI | CTGGAG | 3 cut(s) | 293, 456, 521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 2 cut(s) | 905, 1120 |
| BpuMI | CCSGG | 1 cut(s) | 390 |
| BsaHI | GRCGYC | 1 cut(s) | 733 |
| BsaI | GGTCTC | 3 cut(s) | 17, 101, 915 |
| BsaJI | CCNNGG | 6 cut(s) | 169, 340, 352, 965, 1070, 1179 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 14, 44 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 365, 395, 396, 771 |
| Bse118I | RCCGGY | 1 cut(s) | 1094 |
| Bse1I | ACTGG | 5 cut(s) | 276, 306, 400, 1048, 1109 |
| Bse21I | CCTNAGG | 1 cut(s) | 741 |
| BseBI | CCWGG | 3 cut(s) | 1012, 1071, 1181 |
| BseDI | CCNNGG | 6 cut(s) | 169, 340, 352, 965, 1070, 1179 |
| BseGI | GGATG | 2 cut(s) | 211, 652 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 365, 395, 396, 771 |
| BseMII | CTCAG | 3 cut(s) | 618, 755, 849 |
| BseNI | ACTGG | 5 cut(s) | 276, 306, 400, 1048, 1109 |
| BseRI | GAGGAG | 1 cut(s) | 341 |
| BseXI | GCAGC | 4 cut(s) | 496, 676, 914, 1015 |
| BsgI | GTGCAG | 1 cut(s) | 945 |
| Bsh1236I | CGCG | 2 cut(s) | 56, 92 |
| Bsh1285I | CGRYCG | 1 cut(s) | 769 |
| BshFI | GGCC | 3 cut(s) | 325, 746, 970 |
| BsiEI | CGRYCG | 1 cut(s) | 769 |
| BsiHKAI | GWGCWC | 2 cut(s) | 147, 1134 |
| BsiHKCI | CYCGRG | 1 cut(s) | 672 |
| BsiSI | CCGG | 3 cut(s) | 100, 390, 1095 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 365, 395, 396, 771 |
| BsmAI | GTCTC | 4 cut(s) | 17, 101, 915, 1083 |
| BsmI | GAATGC | 1 cut(s) | 673 |
| BsnI | GGCC | 3 cut(s) | 325, 746, 970 |
| Bso31I | GGTCTC | 3 cut(s) | 17, 101, 915 |
| BsoBI | CYCGRG | 1 cut(s) | 672 |
| Bsp1286I | GDGCHC | 2 cut(s) | 147, 1134 |
| Bsp143I | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 162 |
| Bsp19I | CCATGG | 1 cut(s) | 340 |
| BspACI | CCGC | 3 cut(s) | 56, 66, 92 |
| BspANI | GGCC | 3 cut(s) | 325, 746, 970 |
| BspCNI | CTCAG | 3 cut(s) | 619, 754, 850 |
| BspFNI | CGCG | 2 cut(s) | 56, 92 |
| BspHI | TCATGA | 1 cut(s) | 601 |
| BspLI | GGNNCC | 1 cut(s) | 1185 |
| BspPI | GGATC | 1 cut(s) | 301 |
| BspTNI | GGTCTC | 3 cut(s) | 17, 101, 915 |
| BsrFI | RCCGGY | 1 cut(s) | 1094 |
| BsrI | ACTGG | 5 cut(s) | 276, 306, 400, 1048, 1109 |
| BssAI | RCCGGY | 1 cut(s) | 1094 |
| BssECI | CCNNGG | 6 cut(s) | 169, 340, 352, 965, 1070, 1179 |
| BssMI | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| BssNI | GRCGYC | 1 cut(s) | 733 |
| BssT1I | CCWWGG | 3 cut(s) | 169, 340, 965 |
| Bst2UI | CCWGG | 3 cut(s) | 1012, 1071, 1181 |
| Bst4CI | ACNGT | 2 cut(s) | 119, 981 |
| BstACI | GRCGYC | 1 cut(s) | 733 |
| BstC8I | GCNNGC | 3 cut(s) | 411, 543, 850 |
| BstDEI | CTNAG | 5 cut(s) | 162, 317, 627, 741, 858 |
| BstDSI | CCRYGG | 1 cut(s) | 340 |
| BstF5I | GGATG | 2 cut(s) | 211, 652 |
| BstFNI | CGCG | 2 cut(s) | 56, 92 |
| BstH2I | RGCGCY | 2 cut(s) | 169, 589 |
| BstHHI | GCGC | 2 cut(s) | 168, 588 |
| BstKTI | GATC | 7 cut(s) | 309, 331, 601, 664, 769, 880, 956 |
| BstMAI | GTCTC | 4 cut(s) | 17, 101, 915, 1083 |
| BstMBI | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| BstMCI | CGRYCG | 1 cut(s) | 769 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 65 |
| BstNI | CCWGG | 3 cut(s) | 1012, 1071, 1181 |
| BstNSI | RCATGY | 1 cut(s) | 998 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 274 |
| BstSCI | CCNGG | 4 cut(s) | 388, 1010, 1069, 1179 |
| BstSFI | CTRYAG | 2 cut(s) | 594, 657 |
| BstUI | CGCG | 2 cut(s) | 56, 92 |
| BstV1I | GCAGC | 4 cut(s) | 496, 676, 914, 1015 |
| BstV2I | GAAGAC | 3 cut(s) | 407, 728, 828 |
| BstX2I | RGATCY | 2 cut(s) | 877, 953 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 848 |
| BstYI | RGATCY | 2 cut(s) | 877, 953 |
| Bsu36I | CCTNAGG | 1 cut(s) | 741 |
| BsuI | GTATCC | 1 cut(s) | 771 |
| BsuRI | GGCC | 3 cut(s) | 325, 746, 970 |
| BtgI | CCRYGG | 1 cut(s) | 340 |
| BtsCI | GGATG | 2 cut(s) | 211, 652 |
| BtsIMutI | CAGTG | 1 cut(s) | 1041 |
| Cac8I | GCNNGC | 3 cut(s) | 411, 543, 850 |
| CciI | TCATGA | 1 cut(s) | 601 |
| CfoI | GCGC | 2 cut(s) | 168, 588 |
| Cfr10I | RCCGGY | 1 cut(s) | 1094 |
| Cfr13I | GGNCC | 3 cut(s) | 356, 383, 1183 |
| CseI | GACGC | 1 cut(s) | 722 |
| Csp6I | GTAC | 2 cut(s) | 52, 393 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1125, 1160 |
| CviAII | CATG | 5 cut(s) | 341, 602, 619, 634, 995 |
| CviQI | GTAC | 2 cut(s) | 52, 393 |
| DdeI | CTNAG | 5 cut(s) | 162, 317, 627, 741, 858 |
| DpnI | GATC | 7 cut(s) | 308, 330, 600, 663, 768, 879, 955 |
| DpnII | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| Ecl136II | GAGCTC | 1 cut(s) | 1132 |
| Eco130I | CCWWGG | 3 cut(s) | 169, 340, 965 |
| Eco147I | AGGCCT | 2 cut(s) | 325, 746 |
| Eco24I | GRGCYC | 1 cut(s) | 1134 |
| Eco31I | GGTCTC | 3 cut(s) | 17, 101, 915 |
| Eco32I | GATATC | 1 cut(s) | 462 |
| Eco47I | GGWCC | 3 cut(s) | 356, 383, 1183 |
| Eco53kI | GAGCTC | 1 cut(s) | 1132 |
| Eco81I | CCTNAGG | 1 cut(s) | 741 |
| Eco88I | CYCGRG | 1 cut(s) | 672 |
| EcoICRI | GAGCTC | 1 cut(s) | 1132 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1183 |
| EcoRII | CCWGG | 3 cut(s) | 1010, 1069, 1179 |
| EcoRV | GATATC | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 3 cut(s) | 169, 340, 965 |
| EcoT38I | GRGCYC | 1 cut(s) | 1134 |
| ErhI | CCWWGG | 3 cut(s) | 169, 340, 965 |
| FaeI | CATG | 5 cut(s) | 344, 605, 622, 637, 998 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 275, 307, 711, 743 |
| FatI | CATG | 5 cut(s) | 340, 601, 618, 633, 994 |
| FauI | CCCGC | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 66, 510, 690, 903, 1029 |
| FokI | GGATG | 2 cut(s) | 218, 659 |
| FriOI | GRGCYC | 1 cut(s) | 1134 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 66, 510, 690, 903, 1029 |
| FspBI | CTAG | 2 cut(s) | 929, 1142 |
| GlaI | GCGC | 2 cut(s) | 167, 587 |
| GluI | GCNGC | 6 cut(s) | 57, 66, 510, 690, 903, 1029 |
| GsuI | CTGGAG | 3 cut(s) | 293, 456, 521 |
| HaeII | RGCGCY | 2 cut(s) | 169, 589 |
| HaeIII | GGCC | 3 cut(s) | 325, 746, 970 |
| HapII | CCGG | 3 cut(s) | 100, 390, 1095 |
| HgaI | GACGC | 1 cut(s) | 722 |
| HhaI | GCGC | 2 cut(s) | 168, 588 |
| Hin1I | GRCGYC | 1 cut(s) | 733 |
| Hin1II | CATG | 5 cut(s) | 344, 605, 622, 637, 998 |
| Hin6I | GCGC | 2 cut(s) | 166, 586 |
| HinP1I | GCGC | 2 cut(s) | 166, 586 |
| HinfI | GANTC | 3 cut(s) | 257, 275, 431 |
| HpaII | CCGG | 3 cut(s) | 100, 390, 1095 |
| HphI | GGTGA | 3 cut(s) | 316, 500, 808 |
| Hpy166II | GTNNAC | 1 cut(s) | 359 |
| Hpy188I | TCNGA | 8 cut(s) | 16, 266, 471, 666, 709, 877, 920, 985 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 435, 602, 764, 1115, 1137, 1159 |
| Hpy8I | GTNNAC | 1 cut(s) | 359 |
| HpyAV | CCTTC | 5 cut(s) | 127, 145, 320, 765, 799 |
| HpyCH4III | ACNGT | 2 cut(s) | 119, 981 |
| HpyCH4IV | ACGT | 1 cut(s) | 1007 |
| HpyCH4V | TGCA | 8 cut(s) | 37, 425, 494, 894, 962, 1004, 1031, 1121 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 65 |
| HpyF3I | CTNAG | 5 cut(s) | 162, 317, 627, 741, 858 |
| HpySE526I | ACGT | 1 cut(s) | 1007 |
| Hsp92I | GRCGYC | 1 cut(s) | 733 |
| Hsp92II | CATG | 5 cut(s) | 344, 605, 622, 637, 998 |
| HspAI | GCGC | 2 cut(s) | 166, 586 |
| Kzo9I | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| LmnI | GCTCC | 4 cut(s) | 142, 354, 437, 991 |
| Lsp1109I | GCAGC | 4 cut(s) | 496, 676, 914, 1015 |
| LweI | GCATC | 4 cut(s) | 112, 481, 1108, 1165 |
| MaeI | CTAG | 2 cut(s) | 929, 1142 |
| MaeII | ACGT | 1 cut(s) | 1007 |
| MaeIII | GTNAC | 1 cut(s) | 863 |
| MalI | GATC | 7 cut(s) | 308, 330, 600, 663, 768, 879, 955 |
| MboI | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| MboII | GAAGA | 5 cut(s) | 412, 728, 833, 947, 948 |
| MfeI | CAATTG | 1 cut(s) | 1061 |
| MflI | RGATCY | 2 cut(s) | 877, 953 |
| MhlI | GDGCHC | 2 cut(s) | 147, 1134 |
| MluCI | AATT | 5 cut(s) | 156, 193, 251, 1061, 1122 |
| MlyI | GAGTC | 2 cut(s) | 284, 440 |
| MmeI | TCCRAC | 1 cut(s) | 963 |
| MseI | TTAA | 3 cut(s) | 611, 1125, 1189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 452 |
| MspI | CCGG | 3 cut(s) | 100, 390, 1095 |
| MspR9I | CCNGG | 4 cut(s) | 390, 1012, 1071, 1181 |
| MunI | CAATTG | 1 cut(s) | 1061 |
| Mva1269I | GAATGC | 1 cut(s) | 673 |
| MvaI | CCWGG | 3 cut(s) | 1012, 1071, 1181 |
| MvnI | CGCG | 2 cut(s) | 56, 92 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 65 |
| NciI | CCSGG | 1 cut(s) | 390 |
| NcoI | CCATGG | 1 cut(s) | 340 |
| NdeII | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| NlaIII | CATG | 5 cut(s) | 344, 605, 622, 637, 998 |
| NlaIV | GGNNCC | 1 cut(s) | 1185 |
| NspI | RCATGY | 1 cut(s) | 998 |
| PaeR7I | CTCGAG | 1 cut(s) | 672 |
| PagI | TCATGA | 1 cut(s) | 601 |
| PceI | AGGCCT | 2 cut(s) | 325, 746 |
| PctI | GAATGC | 1 cut(s) | 673 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 6 cut(s) | 58, 67, 511, 691, 904, 1030 |
| Ple19I | CGATCG | 1 cut(s) | 769 |
| PleI | GAGTC | 2 cut(s) | 283, 439 |
| PpsI | GAGTC | 2 cut(s) | 283, 439 |
| PpuMI | RGGWCCY | 1 cut(s) | 1183 |
| PshAI | GACNNNNGTC | 1 cut(s) | 274 |
| PsiI | TTATAA | 2 cut(s) | 227, 531 |
| Psp124BI | GAGCTC | 1 cut(s) | 1134 |
| Psp5II | RGGWCCY | 1 cut(s) | 1183 |
| Psp6I | CCWGG | 3 cut(s) | 1010, 1069, 1179 |
| PspGI | CCWGG | 3 cut(s) | 1010, 1069, 1179 |
| PspN4I | GGNNCC | 1 cut(s) | 1185 |
| PspPI | GGNCC | 3 cut(s) | 356, 383, 1183 |
| PspPPI | RGGWCCY | 1 cut(s) | 1183 |
| PspXI | VCTCGAGB | 1 cut(s) | 672 |
| PsuI | RGATCY | 2 cut(s) | 877, 953 |
| PvuI | CGATCG | 1 cut(s) | 769 |
| RsaI | GTAC | 2 cut(s) | 53, 394 |
| RsaNI | GTAC | 2 cut(s) | 52, 393 |
| RseI | CAYNNNNRTG | 1 cut(s) | 452 |
| SacI | GAGCTC | 1 cut(s) | 1134 |
| SaqAI | TTAA | 3 cut(s) | 611, 1125, 1189 |
| SatI | GCNGC | 6 cut(s) | 57, 66, 510, 690, 903, 1029 |
| Sau3AI | GATC | 7 cut(s) | 306, 328, 598, 661, 766, 877, 953 |
| Sau96I | GGNCC | 3 cut(s) | 356, 383, 1183 |
| SchI | GAGTC | 2 cut(s) | 284, 440 |
| ScrFI | CCNGG | 4 cut(s) | 390, 1012, 1071, 1181 |
| SduI | GDGCHC | 2 cut(s) | 147, 1134 |
| SfaNI | GCATC | 4 cut(s) | 112, 481, 1108, 1165 |
| SfcI | CTRYAG | 2 cut(s) | 594, 657 |
| Sfr274I | CTCGAG | 1 cut(s) | 672 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1094 |
| SinI | GGWCC | 3 cut(s) | 356, 383, 1183 |
| SlaI | CTCGAG | 1 cut(s) | 672 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 452 |
| SmlI | CTYRAG | 3 cut(s) | 672, 884, 1135 |
| SmoI | CTYRAG | 3 cut(s) | 672, 884, 1135 |
| SpeI | ACTAGT | 1 cut(s) | 1141 |
| Sse9I | AATT | 5 cut(s) | 156, 193, 251, 1061, 1122 |
| SseBI | AGGCCT | 2 cut(s) | 325, 746 |
| SsiI | CCGC | 3 cut(s) | 56, 66, 92 |
| SspI | AATATT | 2 cut(s) | 829, 1165 |
| SspMI | CTAG | 2 cut(s) | 929, 1142 |
| SstI | GAGCTC | 1 cut(s) | 1134 |
| StuI | AGGCCT | 2 cut(s) | 325, 746 |
| StyD4I | CCNGG | 4 cut(s) | 388, 1010, 1069, 1179 |
| StyI | CCWWGG | 3 cut(s) | 169, 340, 965 |
| TaaI | ACNGT | 2 cut(s) | 119, 981 |
| TaiI | ACGT | 1 cut(s) | 1010 |
| TaqI | TCGA | 4 cut(s) | 108, 673, 769, 1079 |
| TaqII | GACCGA | 1 cut(s) | 344 |
| TasI | AATT | 5 cut(s) | 156, 193, 251, 1061, 1122 |
| TauI | GCSGC | 2 cut(s) | 59, 68 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 3 cut(s) | 611, 1125, 1189 |
| Tru9I | TTAA | 3 cut(s) | 611, 1125, 1189 |
| TscAI | CASTG | 1 cut(s) | 1048 |
| TseI | GCWGC | 4 cut(s) | 509, 689, 902, 1028 |
| TspDTI | ATGAA | 6 cut(s) | 436, 618, 622, 635, 732, 948 |
| TspRI | CASTG | 1 cut(s) | 1048 |
| VpaK11BI | GGWCC | 3 cut(s) | 356, 383, 1183 |
| XapI | RAATTY | 1 cut(s) | 251 |
| XceI | RCATGY | 1 cut(s) | 998 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 136 |
| XhoI | CTCGAG | 1 cut(s) | 672 |
| XspI | CTAG | 2 cut(s) | 929, 1142 |