Rw1G041270

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
68187171 .. 68190001
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G041270.1

Sequence Viewer

Length: 1185 bp
ATGGCGTCGCAGAGGGAAACCAAGTTCCTGCAGGAGCTCATTCTCTACGCCGCGAGCGCCGCCATGAGCTGCCTGGTTCTGTTCGTGGGGCTCCGACACCTCGACCCGAACCGCGAGGCCTCCAAGAAGGCCATGGAGCACAAGAAGGAAATCGCTAGGCGCCTCGGCCGTCCTCTCATTCACACCAATCCTTATGAGGATGTCATAGCGTGCGATGTTATAAACCCTGACCACATTGATGTGGAGTTTAACTCCATTGGAGGACTGGAGGCTATAAAGGAAGCATTGTTTGAACTGGTGATTCTTCCACTGAAGAGGCCGGACCTCTTTAACCATGGGAAACTCCTTGGTCCACAAAAGGGAGTCTTGTTGTACGGACCACCAGGTACTGGGAAGACTATGCTTGCTAAAGCTATTGCAAAGGAGTCTGGAGCTGTTTTCATTAATGTTAGGATATCAAACCTGATGAGCAAATGGTTTGGTGATGCACAAAAACTTGTTTCTGCTGTGTTTAGCTTGGCTCATAAACTCCAGCCTGCTATCATATTTATCGACGAGGTTGATAGTTTCTTGGGACAGCGCCGTACTACAGAGCATGAAGCGTTAACTAACATGAAAACTGAGTTCATGGCTTTGTGGGATGGGTTTACTACAGACCAGCATGCTAGGGTTATGGTTCTCGCCGCTACCAATCGTCCATCAGAGCTTGATGAAGCAATACTTCGGCGTCTTCCTCAGGCCTTTGAGATTGGGATGCCCAATCAAAGGGATAGAGCTGAGATACTGAAGGTAGTCTTGAAGGGTGAGAGAGTTGAAAAGAACATTAATTATGACCGTTTAGCTGCCTTGGCTGAGGGTTACTCCGGTTCAGATCTACTTGAGCTCTGCAAGAAAGCAGCCTATTTCCCTATCAGAGACTTACTAGATGAAGAAAAGAAGGGGAAAAAATCTTCAGCACCAAGGCCATTAACACAGAAGGACTTGGAGAATGTTCTTGCAACTTCCAGGCATACAAAGGTTGCTGCAAATGACTATTATACGGGATTGAAGTCGCCATCATCATCACCAGGGTTTTCAAGGAACAGGGAGTCCGGTGAGATTCCAGTTCAAGCTGCAATTAATGAGCTCTCTAAGCTTGTGGTTTCCCAAATATTGAATATTCAAACCGATCCCCAGGATCCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

43.84

Weight (kDa)

8.25

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_5 PF07728 121 - 244 1.7e-06 AAA domain (dynein-related subfamily)
AAA PF00004 122 - 251 7.7e-37 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 274 - 310 9.8e-10 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010923)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 2 cut(s) 53, 114
AciI CCGC 4 cut(s) 51, 60, 112, 684
AclWI GGATC 2 cut(s) 1163, 1172
AcoI YGGCCR 1 cut(s) 166
AcuI CTGAAG 3 cut(s) 332, 806, 936
AcyI GRCGYC 3 cut(s) 5, 160, 727
AfaI GTAC 3 cut(s) 374, 388, 586
AfiI CCNNNNNNNGG 3 cut(s) 359, 389, 765
AgsI TTSAA 8 cut(s) 293, 799, 815, 1048, 1077, 1109, 1156, 1163
AjnI CCWGG 5 cut(s) 72, 382, 1004, 1066, 1173
AloI GAACNNNNNNTCC 4 cut(s) 8, 40, 1073, 1105
Alw21I GWGCWC 4 cut(s) 39, 141, 885, 1128
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 2 cut(s) 1163, 1172
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 6 cut(s) 117, 129, 166, 317, 738, 962
ApeKI GCWGC 5 cut(s) 69, 842, 896, 1022, 1112
AseI ATTAAT 3 cut(s) 444, 825, 1119
AspLEI GCGC 3 cut(s) 59, 162, 582
AspS9I GGNCC 3 cut(s) 322, 350, 377
AsuHPI GGTGA 5 cut(s) 310, 494, 815, 1056, 1106
AvaII GGWCC 3 cut(s) 322, 350, 377
AxyI CCTNAGG 1 cut(s) 735
BamHI GGATCC 1 cut(s) 1177
BanI GGYRCC 1 cut(s) 159
BanII GRGCYC 4 cut(s) 39, 93, 885, 1128
BbsI GAAGAC 2 cut(s) 401, 722
Bbv12I GWGCWC 4 cut(s) 39, 141, 885, 1128
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 5 cut(s) 56, 829, 908, 1009, 1099
BccI CCATC 3 cut(s) 635, 706, 1063
BceAI ACGGC 2 cut(s) 153, 567
BciT130I CCWGG 5 cut(s) 74, 384, 1006, 1068, 1175
BcoDI GTCTC 1 cut(s) 909
BfaI CTAG 3 cut(s) 156, 666, 923
BfmI CTRYAG 3 cut(s) 29, 588, 651
BfoI RGCGCY 3 cut(s) 60, 163, 583
BglII AGATCT 1 cut(s) 871
BisI GCNGC 8 cut(s) 51, 60, 70, 684, 843, 897, 1023, 1113
BlsI GCNGC 8 cut(s) 52, 61, 71, 685, 844, 898, 1024, 1114
Bme1390I CCNGG 5 cut(s) 74, 384, 1006, 1068, 1175
Bme18I GGWCC 3 cut(s) 322, 350, 377
BmgT120I GGNCC 3 cut(s) 322, 350, 377
BmiI GGNNCC 3 cut(s) 92, 161, 1179
BmrFI CCNGG 5 cut(s) 74, 384, 1006, 1068, 1175
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 475, 744
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 2 cut(s) 401, 722
BplI GAGNNNNNCTC 4 cut(s) 236, 268, 845, 877
BpmI CTGGAG 3 cut(s) 287, 450, 515
Bpu10I CCTNAGC 1 cut(s) 852
BpuEI CTTGAG 1 cut(s) 899
BsaHI GRCGYC 3 cut(s) 5, 160, 727
BsaJI CCNNGG 8 cut(s) 132, 163, 334, 346, 846, 959, 1067, 1173
BsaWI WCCGGW 2 cut(s) 863, 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 389, 765
Bse1I ACTGG 4 cut(s) 270, 300, 394, 1103
Bse21I CCTNAGG 1 cut(s) 735
BseBI CCWGG 5 cut(s) 74, 384, 1006, 1068, 1175
BseDI CCNNGG 8 cut(s) 132, 163, 334, 346, 846, 959, 1067, 1173
BseGI GGATG 3 cut(s) 205, 646, 759
BseLI CCNNNNNNNGG 3 cut(s) 359, 389, 765
BseMII CTCAG 4 cut(s) 612, 749, 768, 843
BseNI ACTGG 4 cut(s) 270, 300, 394, 1103
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 5 cut(s) 56, 829, 908, 1009, 1099
Bsh1236I CGCG 2 cut(s) 53, 114
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 6 cut(s) 119, 131, 168, 319, 740, 964
BshNI GGYRCC 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 4 cut(s) 39, 141, 885, 1128
BsiSI CCGG 3 cut(s) 320, 864, 1092
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 3 cut(s) 359, 389, 765
BsmAI GTCTC 1 cut(s) 909
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 6 cut(s) 119, 131, 168, 319, 740, 964
Bsp1286I GDGCHC 5 cut(s) 39, 93, 141, 885, 1128
Bsp143I GATC 3 cut(s) 871, 1168, 1177
Bsp19I CCATGG 2 cut(s) 132, 334
BspACI CCGC 4 cut(s) 51, 60, 112, 684
BspANI GGCC 6 cut(s) 119, 131, 168, 319, 740, 964
BspCNI CTCAG 4 cut(s) 613, 748, 769, 844
BspFNI CGCG 2 cut(s) 53, 114
BspLI GGNNCC 3 cut(s) 92, 161, 1179
BspMAI CTGCAG 1 cut(s) 33
BspPI GGATC 2 cut(s) 1163, 1172
BspT107I GGYRCC 1 cut(s) 159
BsrI ACTGG 4 cut(s) 270, 300, 394, 1103
BssECI CCNNGG 8 cut(s) 132, 163, 334, 346, 846, 959, 1067, 1173
BssMI GATC 3 cut(s) 871, 1168, 1177
BssNI GRCGYC 3 cut(s) 5, 160, 727
BssT1I CCWWGG 5 cut(s) 132, 334, 346, 846, 959
Bst2UI CCWGG 5 cut(s) 74, 384, 1006, 1068, 1175
Bst4CI ACNGT 1 cut(s) 836
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 3 cut(s) 5, 160, 727
BstC8I GCNNGC 5 cut(s) 55, 211, 405, 537, 663
BstDEI CTNAG 5 cut(s) 621, 735, 777, 852, 1131
BstDSI CCRYGG 2 cut(s) 132, 334
BstF5I GGATG 3 cut(s) 205, 646, 759
BstFNI CGCG 2 cut(s) 53, 114
BstH2I RGCGCY 3 cut(s) 60, 163, 583
BstHHI GCGC 3 cut(s) 59, 162, 582
BstKTI GATC 3 cut(s) 874, 1171, 1180
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 3 cut(s) 871, 1168, 1177
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 56, 59, 848, 1132
BstNI CCWGG 5 cut(s) 74, 384, 1006, 1068, 1175
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 5 cut(s) 72, 382, 1004, 1066, 1173
BstSFI CTRYAG 3 cut(s) 29, 588, 651
BstUI CGCG 2 cut(s) 53, 114
BstV1I GCAGC 5 cut(s) 56, 829, 908, 1009, 1099
BstV2I GAAGAC 2 cut(s) 401, 722
BstX2I RGATCY 2 cut(s) 871, 1177
BstYI RGATCY 2 cut(s) 871, 1177
BstZI CGGCCG 1 cut(s) 166
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 6 cut(s) 119, 131, 168, 319, 740, 964
BtgI CCRYGG 2 cut(s) 132, 334
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 3 cut(s) 205, 646, 759
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 5 cut(s) 55, 211, 405, 537, 663
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 3 cut(s) 59, 162, 582
Cfr13I GGNCC 3 cut(s) 322, 350, 377
CseI GACGC 1 cut(s) 716
CsiI ACCWGGT 1 cut(s) 382
Csp6I GTAC 3 cut(s) 373, 387, 585
CviAII CATG 7 cut(s) 64, 133, 335, 596, 613, 628, 662
CviQI GTAC 3 cut(s) 373, 387, 585
DdeI CTNAG 5 cut(s) 621, 735, 777, 852, 1131
DinI GGCGCC 1 cut(s) 161
DpnI GATC 3 cut(s) 873, 1170, 1179
DpnII GATC 3 cut(s) 871, 1168, 1177
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 3 cut(s) 37, 883, 1126
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 5 cut(s) 132, 334, 346, 846, 959
Eco147I AGGCCT 2 cut(s) 119, 740
Eco24I GRGCYC 4 cut(s) 39, 93, 885, 1128
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 322, 350, 377
Eco52I CGGCCG 1 cut(s) 166
Eco53kI GAGCTC 3 cut(s) 37, 883, 1126
Eco57I CTGAAG 3 cut(s) 332, 806, 936
Eco81I CCTNAGG 1 cut(s) 735
EcoICRI GAGCTC 3 cut(s) 37, 883, 1126
EcoRII CCWGG 5 cut(s) 72, 382, 1004, 1066, 1173
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 5 cut(s) 132, 334, 346, 846, 959
EcoT38I GRGCYC 4 cut(s) 39, 93, 885, 1128
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 5 cut(s) 132, 334, 346, 846, 959
FaeI CATG 7 cut(s) 67, 136, 338, 599, 616, 631, 665
FalI AAGNNNNNCTT 6 cut(s) 350, 382, 705, 737, 779, 811
FaqI GGGAC 1 cut(s) 588
FatI CATG 7 cut(s) 63, 132, 334, 595, 612, 627, 661
Fnu4HI GCNGC 8 cut(s) 51, 60, 70, 684, 843, 897, 1023, 1113
FokI GGATG 3 cut(s) 212, 653, 766
FriOI GRGCYC 4 cut(s) 39, 93, 885, 1128
Fsp4HI GCNGC 8 cut(s) 51, 60, 70, 684, 843, 897, 1023, 1113
FspBI CTAG 3 cut(s) 156, 666, 923
GlaI GCGC 3 cut(s) 58, 161, 581
GluI GCNGC 8 cut(s) 51, 60, 70, 684, 843, 897, 1023, 1113
GsuI CTGGAG 3 cut(s) 287, 450, 515
HaeII RGCGCY 3 cut(s) 60, 163, 583
HaeIII GGCC 6 cut(s) 119, 131, 168, 319, 740, 964
HapII CCGG 3 cut(s) 320, 864, 1092
HgaI GACGC 1 cut(s) 716
HhaI GCGC 3 cut(s) 59, 162, 582
Hin1I GRCGYC 3 cut(s) 5, 160, 727
Hin1II CATG 7 cut(s) 67, 136, 338, 599, 616, 631, 665
Hin6I GCGC 3 cut(s) 57, 160, 580
HinP1I GCGC 3 cut(s) 57, 160, 580
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 1 cut(s) 1133
HinfI GANTC 5 cut(s) 301, 363, 425, 1088, 1099
HpaI GTTAAC 1 cut(s) 606
HpaII CCGG 3 cut(s) 320, 864, 1092
HphI GGTGA 5 cut(s) 310, 494, 815, 1056, 1106
Hpy166II GTNNAC 3 cut(s) 353, 606, 648
Hpy188I TCNGA 4 cut(s) 95, 703, 871, 914
Hpy188III TCNNGA 2 cut(s) 429, 796
Hpy8I GTNNAC 3 cut(s) 353, 606, 648
Hpy99I CGWCG 2 cut(s) 10, 557
HpyAV CCTTC 6 cut(s) 121, 139, 781, 793, 931, 970
HpyCH4III ACNGT 1 cut(s) 836
HpyCH4V TGCA 7 cut(s) 31, 419, 488, 888, 998, 1025, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 59, 848, 1132
HpyF3I CTNAG 5 cut(s) 621, 735, 777, 852, 1131
Hsp92I GRCGYC 3 cut(s) 5, 160, 727
Hsp92II CATG 7 cut(s) 67, 136, 338, 599, 616, 631, 665
HspAI GCGC 3 cut(s) 57, 160, 580
KasI GGCGCC 1 cut(s) 159
KspAI GTTAAC 1 cut(s) 606
Kzo9I GATC 3 cut(s) 871, 1168, 1177
LmnI GCTCC 4 cut(s) 34, 96, 136, 431
Lsp1109I GCAGC 5 cut(s) 56, 829, 908, 1009, 1099
LweI GCATC 2 cut(s) 475, 744
MabI ACCWGGT 1 cut(s) 382
MaeI CTAG 3 cut(s) 156, 666, 923
MaeIII GTNAC 1 cut(s) 857
MalI GATC 3 cut(s) 873, 1170, 1179
MboI GATC 3 cut(s) 871, 1168, 1177
MboII GAAGA 6 cut(s) 296, 325, 406, 722, 941, 942
MflI RGATCY 2 cut(s) 871, 1177
MhlI GDGCHC 5 cut(s) 39, 93, 141, 885, 1128
MluCI AATT 2 cut(s) 826, 1116
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 3 cut(s) 372, 434, 1097
MmeI TCCRAC 1 cut(s) 118
MseI TTAA 7 cut(s) 249, 330, 444, 605, 825, 968, 1119
MslI CAYNNNNRTG 2 cut(s) 237, 239
MspI CCGG 3 cut(s) 320, 864, 1092
MspR9I CCNGG 5 cut(s) 74, 384, 1006, 1068, 1175
MvaI CCWGG 5 cut(s) 74, 384, 1006, 1068, 1175
MvnI CGCG 2 cut(s) 53, 114
MwoI GCNNNNNNNGC 4 cut(s) 56, 59, 848, 1132
NarI GGCGCC 1 cut(s) 160
NcoI CCATGG 2 cut(s) 132, 334
NdeII GATC 3 cut(s) 871, 1168, 1177
NlaIII CATG 7 cut(s) 67, 136, 338, 599, 616, 631, 665
NlaIV GGNNCC 3 cut(s) 92, 161, 1179
NmeAIII GCCGAG 1 cut(s) 144
NspI RCATGY 1 cut(s) 665
PaeI GCATGC 1 cut(s) 665
PceI AGGCCT 2 cut(s) 119, 740
PfeI GAWTC 2 cut(s) 301, 1099
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 8 cut(s) 52, 61, 71, 685, 844, 898, 1024, 1114
PleI GAGTC 3 cut(s) 371, 433, 1096
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 3 cut(s) 371, 433, 1096
PshBI ATTAAT 3 cut(s) 444, 825, 1119
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 3 cut(s) 39, 885, 1128
Psp6I CCWGG 5 cut(s) 72, 382, 1004, 1066, 1173
PspGI CCWGG 5 cut(s) 72, 382, 1004, 1066, 1173
PspN4I GGNNCC 3 cut(s) 92, 161, 1179
PspPI GGNCC 3 cut(s) 322, 350, 377
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 2 cut(s) 871, 1177
RsaI GTAC 3 cut(s) 374, 388, 586
RsaNI GTAC 3 cut(s) 373, 387, 585
RseI CAYNNNNRTG 2 cut(s) 237, 239
SacI GAGCTC 3 cut(s) 39, 885, 1128
SaqAI TTAA 7 cut(s) 249, 330, 444, 605, 825, 968, 1119
SatI GCNGC 8 cut(s) 51, 60, 70, 684, 843, 897, 1023, 1113
Sau3AI GATC 3 cut(s) 871, 1168, 1177
Sau96I GGNCC 3 cut(s) 322, 350, 377
SbfI CCTGCAGG 1 cut(s) 33
SchI GAGTC 3 cut(s) 372, 434, 1097
ScrFI CCNGG 5 cut(s) 74, 384, 1006, 1068, 1175
SdaI CCTGCAGG 1 cut(s) 33
SduI GDGCHC 5 cut(s) 39, 93, 141, 885, 1128
SexAI ACCWGGT 1 cut(s) 382
SfaNI GCATC 2 cut(s) 475, 744
SfcI CTRYAG 3 cut(s) 29, 588, 651
SfoI GGCGCC 1 cut(s) 161
SinI GGWCC 3 cut(s) 322, 350, 377
SmiMI CAYNNNNRTG 2 cut(s) 237, 239
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
SphI GCATGC 1 cut(s) 665
Sse8387I CCTGCAGG 1 cut(s) 33
Sse9I AATT 2 cut(s) 826, 1116
SseBI AGGCCT 2 cut(s) 119, 740
SsiI CCGC 4 cut(s) 51, 60, 112, 684
SspDI GGCGCC 1 cut(s) 159
SspI AATATT 2 cut(s) 1152, 1159
SspMI CTAG 3 cut(s) 156, 666, 923
SstI GAGCTC 3 cut(s) 39, 885, 1128
StuI AGGCCT 2 cut(s) 119, 740
StyD4I CCNGG 5 cut(s) 72, 382, 1004, 1066, 1173
StyI CCWWGG 5 cut(s) 132, 334, 346, 846, 959
TaaI ACNGT 1 cut(s) 836
TaqI TCGA 2 cut(s) 102, 552
TasI AATT 2 cut(s) 826, 1116
TauI GCSGC 3 cut(s) 53, 62, 686
TfiI GAWTC 2 cut(s) 301, 1099
Tru1I TTAA 7 cut(s) 249, 330, 444, 605, 825, 968, 1119
Tru9I TTAA 7 cut(s) 249, 330, 444, 605, 825, 968, 1119
TscAI CASTG 1 cut(s) 315
TseI GCWGC 5 cut(s) 69, 842, 896, 1022, 1112
TspDTI ATGAA 6 cut(s) 430, 612, 616, 629, 726, 942
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 315
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 3 cut(s) 322, 350, 377
VspI ATTAAT 3 cut(s) 444, 825, 1119
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 3 cut(s) 70, 130, 262
XspI CTAG 3 cut(s) 156, 666, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.