FvH4_7g32510

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010923
Physical Location & Seq
Reverse (-)
23369261 .. 23372217
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32510.t1

Sequence Viewer

Length: 1182 bp
ATGGGTTCGCAGAGAGAGACCAAGTTCTTGCAGGAGCTCATGCTCTACGCCGCGAGCGCTGCCCTGAGCTACCTGGCTATCGTCGTGGGGCTCCGACACCTTGACCCGAACCGCGAGGCCTCCAAGAAGGCCATGGAGCACAAGAAGGAAATCGCTAAGCGGCTAGGTCGTCCTCTCATTCAGACCAATCCTTATGAGGATGTTATAGCTTGCGATGTTATAAACCCTGACCACATTGATGTGGAGTTTAACTCCATTGGAGGGCTGGAGGAGATAAAGGAAGCCTTATTTGAACTGGTGATTCTTCCACTCAAGAGGCCGGACCTCTTTAACCATGGGAAACTCCTTGGTCCACAGAAGGGAGTCTTGTTGTATGGACCACCGGGTACTGGGAAGACTATGCTTGCTAAAGCTATTGCAAAGGAGTCTGGAGCTGTTTTCATTAATGTTAGGATATCAAATCTGATGAGCAAGTGGTTTGGTGATGCACAAAAACTTGTTTCTGCTGTGTTTAGCTTGGCTCATAAACTTCAGCCTGCTATCATATTTATCGACGAGGTTGATAGTTTCTTAGGACAGCGCCGTACTACAGAGCATGAAGCATTAACAAACATGAAAACTGAGTTCATGGCTTTGTGGGATGGGTTTACTACAGACCAAAATGCTCGGGTTATGGTTCTTGCTGCTACTAATCGTCCATCAGAGCTTGATGAAGCAATACTTCGGCGTCTTCCTCAGGCCTTTGAGATTGGGATGCCCAGTGCAAAGGATAGAGCTGAGATATTGAAAGTAGTCTTGAAGGGTGAGAGAGTTGAAAATAACATTGATTTTGATCGTTTAGCTGCCTTGGCTGACGGGTACACTGGTTCAGACCTACTTGAACTCTGCAAGAAAGCAGCCTATATCCCAATTAGAGGTTTACTAGATGAAGAGAAGAGAGGGAAAAAAGCTTCGGCACCAAGGCCATTATCACAGAAGGACTTGGAGAATGTTCTTGCAACTTCCAGGCATACAAAGGTTGCTGCAAATGAGTATTATACAGGATTGAACTTGCCATCATCACCAAGGTTGTCAAGGAACAGGGATTCTGTTGAGATTCCAGCTCAAGCTGCAATTAATGAGCTCTCTAGGCTTGTGGTTTCCCAGATATTGAATATTCAAACCGATCCCCAGGACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

394

Amino Acids

43.6

Weight (kDa)

7.08

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_5 PF07728 121 - 244 3.1e-06 AAA domain (dynein-related subfamily)
AAA PF00004 122 - 251 5.4e-37 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 274 - 308 1.4e-08 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27680 AT5G53540
fragaria_vesca FvH4_7g32510
malus_domestica MD01G1225800.v1.1 MD07G1296300.v1.1
prunus_persica Prupe.2G315900_v2.0.a1
pyrus_communis pycom01g23430 pycom07g26910
rosa_chinensis RchiOBHm_Chr1g0382351
rosa_laevigata RLG00000026184
rosa_multiflora Rmu_sc0000110.1_g000041 Rmu_sc0006177.1_g000002 Rmu_sc0028160.1_g000002
rosa_roxburghii Rroxscaffold_4G00278170
rosa_rugosa Rorug01G0433600
rosa_samantha Rh1AG458300 Rh1BG414600 Rh1CG428700 Rh1DG446700
rosa_wichuraiana Rw1G041270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 955
AccII CGCG 2 cut(s) 53, 114
AciI CCGC 3 cut(s) 51, 112, 160
AclWI GGATC 1 cut(s) 1160
AcuI CTGAAG 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 3 cut(s) 388, 586, 860
AfeI AGCGCT 1 cut(s) 58
AfiI CCNNNNNNNGG 4 cut(s) 261, 359, 389, 914
AgsI TTSAA 8 cut(s) 293, 787, 799, 815, 881, 1048, 1153, 1160
AjnI CCWGG 3 cut(s) 72, 1004, 1170
Alw21I GWGCWC 3 cut(s) 39, 141, 1125
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 1160
Ama87I CYCGRG 1 cut(s) 666
Aor51HI AGCGCT 1 cut(s) 58
AoxI GGCC 5 cut(s) 117, 129, 317, 738, 962
ApeKI GCWGC 6 cut(s) 59, 683, 842, 896, 1022, 1109
AseI ATTAAT 2 cut(s) 444, 1116
AspLEI GCGC 2 cut(s) 59, 582
AspS9I GGNCC 4 cut(s) 322, 350, 377, 1174
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 4 cut(s) 310, 494, 815, 1053
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 4 cut(s) 322, 350, 377, 1174
AxyI CCTNAGG 1 cut(s) 735
BaeI ACNNNNGTAYC 2 cut(s) 850, 883
BanI GGYRCC 1 cut(s) 955
BanII GRGCYC 3 cut(s) 39, 93, 1125
BbsI GAAGAC 2 cut(s) 401, 722
Bbv12I GWGCWC 3 cut(s) 39, 141, 1125
BbvI GCAGC 6 cut(s) 46, 670, 829, 908, 1009, 1096
BccI CCATC 3 cut(s) 635, 706, 1063
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 3 cut(s) 74, 1006, 1172
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 3 cut(s) 164, 923, 1128
BfmI CTRYAG 2 cut(s) 588, 651
BfoI RGCGCY 2 cut(s) 60, 583
BisI GCNGC 8 cut(s) 51, 60, 161, 684, 843, 897, 1023, 1110
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 8 cut(s) 52, 61, 162, 685, 844, 898, 1024, 1111
Bme1390I CCNGG 4 cut(s) 74, 384, 1006, 1172
Bme18I GGWCC 4 cut(s) 322, 350, 377, 1174
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 4 cut(s) 322, 350, 377, 1174
BmiI GGNNCC 3 cut(s) 92, 957, 1176
BmrFI CCNGG 4 cut(s) 74, 384, 1006, 1172
BmrI ACTGGG 2 cut(s) 399, 753
BmsI GCATC 2 cut(s) 475, 744
BmuI ACTGGG 2 cut(s) 399, 753
BpiI GAAGAC 2 cut(s) 401, 722
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 2 cut(s) 287, 450
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 296, 1089
BpuMI CCSGG 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 727
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 7 cut(s) 132, 334, 346, 846, 959, 1064, 1170
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 359, 389, 914
Bse1I ACTGG 4 cut(s) 300, 394, 759, 868
Bse21I CCTNAGG 1 cut(s) 735
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 3 cut(s) 74, 1006, 1172
BseDI CCNNGG 7 cut(s) 132, 334, 346, 846, 959, 1064, 1170
BseGI GGATG 3 cut(s) 205, 646, 759
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 4 cut(s) 261, 359, 389, 914
BseMII CTCAG 4 cut(s) 56, 612, 749, 768
BseNI ACTGG 4 cut(s) 300, 394, 759, 868
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 6 cut(s) 46, 670, 829, 908, 1009, 1096
Bsh1236I CGCG 2 cut(s) 53, 114
BshFI GGCC 5 cut(s) 119, 131, 319, 740, 964
BshNI GGYRCC 1 cut(s) 955
BsiHKAI GWGCWC 3 cut(s) 39, 141, 1125
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 2 cut(s) 320, 383
BslI CCNNNNNNNGG 4 cut(s) 261, 359, 389, 914
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 5 cut(s) 119, 131, 319, 740, 964
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 4 cut(s) 39, 93, 141, 1125
Bsp143I GATC 2 cut(s) 832, 1165
Bsp1720I GCTNAGC 1 cut(s) 156
Bsp19I CCATGG 2 cut(s) 132, 334
BspACI CCGC 3 cut(s) 51, 112, 160
BspANI GGCC 5 cut(s) 119, 131, 319, 740, 964
BspCNI CTCAG 4 cut(s) 57, 613, 748, 769
BspFNI CGCG 2 cut(s) 53, 114
BspLI GGNNCC 3 cut(s) 92, 957, 1176
BspPI GGATC 1 cut(s) 1160
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 4 cut(s) 300, 394, 759, 868
BssECI CCNNGG 7 cut(s) 132, 334, 346, 846, 959, 1064, 1170
BssMI GATC 2 cut(s) 832, 1165
BssNI GRCGYC 1 cut(s) 727
BssT1I CCWWGG 6 cut(s) 132, 334, 346, 846, 959, 1064
Bst2UI CCWGG 3 cut(s) 74, 1006, 1172
Bst6I CTCTTC 2 cut(s) 924, 929
BstACI GRCGYC 1 cut(s) 727
BstC8I GCNNGC 4 cut(s) 55, 211, 405, 537
BstDEI CTNAG 6 cut(s) 65, 156, 571, 621, 735, 777
BstDSI CCRYGG 2 cut(s) 132, 334
BstF5I GGATG 3 cut(s) 205, 646, 759
BstFNI CGCG 2 cut(s) 53, 114
BstH2I RGCGCY 2 cut(s) 60, 583
BstHHI GCGC 2 cut(s) 59, 582
BstKTI GATC 2 cut(s) 835, 1168
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 832, 1165
BstMWI GCNNNNNNNGC 5 cut(s) 56, 59, 848, 1109, 1129
BstNI CCWGG 3 cut(s) 74, 1006, 1172
BstSCI CCNGG 4 cut(s) 72, 382, 1004, 1170
BstSFI CTRYAG 2 cut(s) 588, 651
BstUI CGCG 2 cut(s) 53, 114
BstV1I GCAGC 6 cut(s) 46, 670, 829, 908, 1009, 1096
BstV2I GAAGAC 2 cut(s) 401, 722
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 5 cut(s) 119, 131, 319, 740, 964
BtgI CCRYGG 2 cut(s) 132, 334
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 3 cut(s) 205, 646, 759
BtsIMutI CAGTG 2 cut(s) 766, 861
Cac8I GCNNGC 4 cut(s) 55, 211, 405, 537
CfoI GCGC 2 cut(s) 59, 582
Cfr13I GGNCC 4 cut(s) 322, 350, 377, 1174
CseI GACGC 1 cut(s) 716
Csp6I GTAC 3 cut(s) 387, 585, 859
CviAII CATG 6 cut(s) 40, 133, 335, 596, 613, 628
CviQI GTAC 3 cut(s) 387, 585, 859
DdeI CTNAG 6 cut(s) 65, 156, 571, 621, 735, 777
DpnI GATC 2 cut(s) 834, 1167
DpnII GATC 2 cut(s) 832, 1165
Eam1104I CTCTTC 2 cut(s) 924, 929
EarI CTCTTC 2 cut(s) 924, 929
Ecl136II GAGCTC 2 cut(s) 37, 1123
Eco130I CCWWGG 6 cut(s) 132, 334, 346, 846, 959, 1064
Eco147I AGGCCT 2 cut(s) 119, 740
Eco24I GRGCYC 3 cut(s) 39, 93, 1125
Eco31I GGTCTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 4 cut(s) 322, 350, 377, 1174
Eco47III AGCGCT 1 cut(s) 58
Eco53kI GAGCTC 2 cut(s) 37, 1123
Eco57I CTGAAG 1 cut(s) 515
Eco81I CCTNAGG 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 666
EcoICRI GAGCTC 2 cut(s) 37, 1123
EcoO109I RGGNCCY 1 cut(s) 1174
EcoRII CCWGG 3 cut(s) 72, 1004, 1170
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 6 cut(s) 132, 334, 346, 846, 959, 1064
EcoT38I GRGCYC 3 cut(s) 39, 93, 1125
ErhI CCWWGG 6 cut(s) 132, 334, 346, 846, 959, 1064
FaeI CATG 6 cut(s) 43, 136, 338, 599, 616, 631
FalI AAGNNNNNCTT 6 cut(s) 269, 301, 350, 382, 705, 737
FatI CATG 6 cut(s) 39, 132, 334, 595, 612, 627
Fnu4HI GCNGC 8 cut(s) 51, 60, 161, 684, 843, 897, 1023, 1110
FokI GGATG 3 cut(s) 212, 653, 766
FriOI GRGCYC 3 cut(s) 39, 93, 1125
Fsp4HI GCNGC 8 cut(s) 51, 60, 161, 684, 843, 897, 1023, 1110
FspBI CTAG 3 cut(s) 164, 923, 1128
GlaI GCGC 2 cut(s) 58, 581
GluI GCNGC 8 cut(s) 51, 60, 161, 684, 843, 897, 1023, 1110
GsuI CTGGAG 2 cut(s) 287, 450
HaeII RGCGCY 2 cut(s) 60, 583
HaeIII GGCC 5 cut(s) 119, 131, 319, 740, 964
HapII CCGG 2 cut(s) 320, 383
HgaI GACGC 1 cut(s) 716
HhaI GCGC 2 cut(s) 59, 582
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 6 cut(s) 43, 136, 338, 599, 616, 631
Hin6I GCGC 2 cut(s) 57, 580
HinP1I GCGC 2 cut(s) 57, 580
HindIII AAGCTT 1 cut(s) 948
HinfI GANTC 5 cut(s) 301, 363, 425, 1085, 1096
HpaII CCGG 2 cut(s) 320, 383
HphI GGTGA 4 cut(s) 310, 494, 815, 1053
Hpy166II GTNNAC 4 cut(s) 353, 648, 861, 920
Hpy188I TCNGA 5 cut(s) 95, 183, 465, 703, 871
Hpy188III TCNNGA 3 cut(s) 313, 429, 796
Hpy8I GTNNAC 4 cut(s) 353, 648, 861, 920
Hpy99I CGWCG 2 cut(s) 86, 557
HpyAV CCTTC 5 cut(s) 121, 139, 352, 793, 970
HpyCH4V TGCA 8 cut(s) 31, 419, 488, 764, 888, 998, 1025, 1112
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 59, 848, 1109, 1129
HpyF3I CTNAG 6 cut(s) 65, 156, 571, 621, 735, 777
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 6 cut(s) 43, 136, 338, 599, 616, 631
HspAI GCGC 2 cut(s) 57, 580
Kzo9I GATC 2 cut(s) 832, 1165
LmnI GCTCC 4 cut(s) 34, 96, 136, 431
Lsp1109I GCAGC 6 cut(s) 46, 670, 829, 908, 1009, 1096
LweI GCATC 2 cut(s) 475, 744
MaeI CTAG 3 cut(s) 164, 923, 1128
MalI GATC 2 cut(s) 834, 1167
MboI GATC 2 cut(s) 832, 1165
MboII GAAGA 5 cut(s) 296, 406, 722, 941, 946
MhlI GDGCHC 4 cut(s) 39, 93, 141, 1125
MluCI AATT 2 cut(s) 909, 1113
MlyI GAGTC 2 cut(s) 372, 434
MmeI TCCRAC 1 cut(s) 118
MseI TTAA 5 cut(s) 249, 330, 444, 605, 1116
MslI CAYNNNNRTG 2 cut(s) 237, 239
MspI CCGG 2 cut(s) 320, 383
MspR9I CCNGG 4 cut(s) 74, 384, 1006, 1172
MvaI CCWGG 3 cut(s) 74, 1006, 1172
MvnI CGCG 2 cut(s) 53, 114
MwoI GCNNNNNNNGC 5 cut(s) 56, 59, 848, 1109, 1129
NciI CCSGG 1 cut(s) 384
NcoI CCATGG 2 cut(s) 132, 334
NdeII GATC 2 cut(s) 832, 1165
NlaIII CATG 6 cut(s) 43, 136, 338, 599, 616, 631
NlaIV GGNNCC 3 cut(s) 92, 957, 1176
PceI AGGCCT 2 cut(s) 119, 740
PfeI GAWTC 3 cut(s) 301, 1085, 1096
PkrI GCNGC 8 cut(s) 52, 61, 162, 685, 844, 898, 1024, 1111
PleI GAGTC 2 cut(s) 371, 433
PpsI GAGTC 2 cut(s) 371, 433
PpuMI RGGWCCY 1 cut(s) 1174
PshBI ATTAAT 2 cut(s) 444, 1116
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 2 cut(s) 39, 1125
Psp5II RGGWCCY 1 cut(s) 1174
Psp6I CCWGG 3 cut(s) 72, 1004, 1170
PspGI CCWGG 3 cut(s) 72, 1004, 1170
PspN4I GGNNCC 3 cut(s) 92, 957, 1176
PspPI GGNCC 4 cut(s) 322, 350, 377, 1174
PspPPI RGGWCCY 1 cut(s) 1174
RsaI GTAC 3 cut(s) 388, 586, 860
RsaNI GTAC 3 cut(s) 387, 585, 859
RseI CAYNNNNRTG 2 cut(s) 237, 239
SacI GAGCTC 2 cut(s) 39, 1125
SaqAI TTAA 5 cut(s) 249, 330, 444, 605, 1116
SatI GCNGC 8 cut(s) 51, 60, 161, 684, 843, 897, 1023, 1110
Sau3AI GATC 2 cut(s) 832, 1165
Sau96I GGNCC 4 cut(s) 322, 350, 377, 1174
SchI GAGTC 2 cut(s) 372, 434
ScrFI CCNGG 4 cut(s) 74, 384, 1006, 1172
SduI GDGCHC 4 cut(s) 39, 93, 141, 1125
SfaNI GCATC 2 cut(s) 475, 744
SfcI CTRYAG 2 cut(s) 588, 651
SinI GGWCC 4 cut(s) 322, 350, 377, 1174
SmiMI CAYNNNNRTG 2 cut(s) 237, 239
SmlI CTYRAG 2 cut(s) 311, 1104
SmoI CTYRAG 2 cut(s) 311, 1104
Sse9I AATT 2 cut(s) 909, 1113
SseBI AGGCCT 2 cut(s) 119, 740
SsiI CCGC 3 cut(s) 51, 112, 160
SspI AATATT 1 cut(s) 1156
SspMI CTAG 3 cut(s) 164, 923, 1128
SstI GAGCTC 2 cut(s) 39, 1125
StuI AGGCCT 2 cut(s) 119, 740
StyD4I CCNGG 4 cut(s) 72, 382, 1004, 1170
StyI CCWWGG 6 cut(s) 132, 334, 346, 846, 959, 1064
TaqI TCGA 1 cut(s) 552
TasI AATT 2 cut(s) 909, 1113
TauI GCSGC 2 cut(s) 53, 163
TfiI GAWTC 3 cut(s) 301, 1085, 1096
Tru1I TTAA 5 cut(s) 249, 330, 444, 605, 1116
Tru9I TTAA 5 cut(s) 249, 330, 444, 605, 1116
TscAI CASTG 2 cut(s) 766, 868
TseI GCWGC 6 cut(s) 59, 683, 842, 896, 1022, 1109
TspDTI ATGAA 6 cut(s) 430, 612, 616, 629, 726, 942
TspRI CASTG 2 cut(s) 766, 868
VpaK11BI GGWCC 4 cut(s) 322, 350, 377, 1174
VspI ATTAAT 2 cut(s) 444, 1116
XcmI CCANNNNNNNNNTGG 2 cut(s) 130, 262
XspI CTAG 3 cut(s) 164, 923, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.