Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004679

Physical Location & Seq

Genomic Coordinates Forward (+)

14167635 .. 14172454

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28706.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCTCTGCTTCACTCATGTCCCACCTCTTCCTCTGTTCTCCACCTCCGGTATCTATCTTCCGGCCTCCAGACGATTCACTAGGATTAGAATGTCTTCTTCTTCCTCCATCGATTCTGTTCCTCCTCCACCGGATAACGCAATCGTCCTTGGTTGTGGTGGAATCGCTGTAGATTTCTTAGCGACGGTGGATTCTTATCCTCAAGCTGACGACAAGATCCGAAGCACTAGCCTAAAGGTGCAAGGAGGTGGAAATGCTGCAAATGCGTTAACTTGTGCTGCTCGTTTGGGATTGAATTCGAGACTGATTAGTAAGGTAGCGAATGACTCTCAAGGAAAAGGCATGTTGGAGGAGCTTGAAGCTGATGGTGTGGATACTTCTTTTATTGTGGTCTCTAAAGAGGGTAATTCACCATTTACCTATATCTTAGTTGACAACCAAACGAAAACGCGTACTTGTATTCACACGCCTGGAGACCCACCTATGTTACCAACTGACCTTTCTCAATCGAGTATGCTATCAGCGCTAGACCGAGCCAGCATTGTATACTTTGATGTAAGATTACACGAAACAGCTTTGGTTATTGCAAAAGAGGCAAGTCGCAAGAAGATACCTATTTTAGTTGATACAGAGAAAAAAAGAGATGGTTTAGATGATCTCTTGCCATTCGCCGACTACGTTGTCTGTCCAGAAAATTTCCCTCAGACATGGACAGAAGTGTCTTCAACTCCTGGTGCACTTGTTTCCATGTTGTTGAGATTGCCTAAACTGAAATTTGTGATCGTGACCTCAGGTGAACATGGGTGCTTAATGGTTCAAAGAGCTTCAAAAGAAGTATTTGAATCTCAAGAGACAGACATTGAAAGCTTGTTGGAGACACTGAAGCATAGAAAAGACTCAACGACAACATTTCCAACATGTGTTTCATCGGAGACAACAAAGCTGAAGGCCAACGGGGTAGGAACAATGACCGGAAGATTGTTTCTCGGAACAGCGGAGAAAATTCCTCCAGAAGAGCTTGTAGACACCACTGGTGCTGGCGATGCATTCATAGGAGCTGTTCTATATGCCATATGCGCCGGCATGCCCCCAGAGAAAATGTTACCATTTGCTGCTCAAGTGGCTGGTTGCAGCTGCCGGGCTTTGGGAGCTCGCACGGGTCTTCCTCACCGTACAGATCCTAGACTTGTACCCTTTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

401

Amino Acids

43.08

Weight (kDa)

5.94

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	57 - 281	5.4e-24	pfkB family carbohydrate kinase
PfkB	PF00294	336 - 393	4e-14	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28706 AT4G28706 AT4G28706 AT4G28706 AT5G43910 AT5G43910 AT5G43910 AT5G43910 AT5G43910
fragaria_vesca	FvH4_2g20180 FvH4_2g20180 FvH4_2g20180 FvH4_2g20180
malus_domestica	MD05G1185300.v1.1 MD10G1173500.v1.1
prunus_persica	Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1
pyrus_communis	pycom05g17010 pycom10g14960
rosa_chinensis	RchiOBHm_Chr6g0285941
rosa_laevigata	RLG00000012595
rosa_multiflora	Rmu_sc0004808.1_g000008
rosa_roxburghii	Rroxscaffold_7G00182580
rosa_rugosa	Rorug06G0177600 Rorug06G0177600
rosa_samantha	Rh6AG289700 Rh6BG291600 Rh6CG292500 Rh6DG284600
rosa_wichuraiana	Rw6G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	680, 718
AccI	GTMKAC	2 cut(s)	546, 1023
AccII	CGCG	1 cut(s)	451
AciI	CCGC	1 cut(s)	995
AclWI	GGATC	2 cut(s)	211, 1172
AcsI	RAATTY	4 cut(s)	295, 694, 773, 1002
AcuI	CTGAAG	2 cut(s)	902, 965
AfaI	GTAC	3 cut(s)	454, 1174, 1191
AfeI	AGCGCT	1 cut(s)	525
AfiI	CCNNNNNNNGG	1 cut(s)	1144
AflIII	ACRYGT	2 cut(s)	449, 917
AgsI	TTSAA	7 cut(s)	295, 359, 726, 818, 828, 842, 863
AjnI	CCWGG	2 cut(s)	469, 730
AjuI	GAANNNNNNNTTGG	4 cut(s)	484, 516, 907, 939
Alw21I	GWGCWC	2 cut(s)	739, 1153
Alw26I	GTCTC	6 cut(s)	295, 397, 468, 845, 869, 926
Alw44I	GTGCAC	1 cut(s)	735
AlwI	GGATC	2 cut(s)	211, 1172
Aor51HI	AGCGCT	1 cut(s)	525
AoxI	GGCC	2 cut(s)	63, 948
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	5 cut(s)	257, 278, 1112, 1131, 1134
ApoI	RAATTY	4 cut(s)	295, 694, 773, 1002
Asp700I	GAANNNNTTC	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	526, 1079
AsuC2I	CCSGG	1 cut(s)	1139
AsuHPI	GGTGA	3 cut(s)	402, 806, 1160
AxyI	CCTNAGG	1 cut(s)	790
BaeGI	GKGCMC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	1153
BbsI	GAAGAC	3 cut(s)	87, 714, 1154
Bbv12I	GWGCWC	2 cut(s)	739, 1153
BbvI	GCAGC	5 cut(s)	244, 265, 1099, 1121, 1143
BccI	CCATC	3 cut(s)	116, 359, 638
BciT130I	CCWGG	2 cut(s)	471, 732
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	1139
BcoDI	GTCTC	6 cut(s)	295, 397, 468, 845, 869, 926
BfaI	CTAG	4 cut(s)	81, 228, 527, 1182
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	5 cut(s)	258, 279, 1113, 1132, 1135
BlsI	GCNGC	5 cut(s)	259, 280, 1114, 1133, 1136
Bme1390I	CCNGG	3 cut(s)	471, 732, 1139
BmrFI	CCNGG	3 cut(s)	471, 732, 1139
BmsI	GCATC	1 cut(s)	1033
BpiI	GAAGAC	3 cut(s)	87, 714, 1154
BpmI	CTGGAG	3 cut(s)	52, 492, 993
BpuEI	CTTGAG	4 cut(s)	186, 315, 831, 1101
BpuMI	CCSGG	1 cut(s)	1139
Bsa29I	ATCGAT	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	195
BsaI	GGTCTC	2 cut(s)	397, 468
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	3 cut(s)	47, 130, 971
Bsc4I	CCNNNNNNNGG	1 cut(s)	1144
Bse118I	RCCGGY	1 cut(s)	1079
Bse1I	ACTGG	1 cut(s)	1036
Bse21I	CCTNAGG	1 cut(s)	790
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	471, 732
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	1144
BseMII	CTCAG	2 cut(s)	716, 804
BseNI	ACTGG	1 cut(s)	1036
BseRI	GAGGAG	2 cut(s)	114, 365
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	5 cut(s)	244, 265, 1099, 1121, 1143
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	2 cut(s)	65, 950
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	739, 1153
BsiSI	CCGG	6 cut(s)	48, 62, 131, 972, 1080, 1138
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	1144
BsmAI	GTCTC	6 cut(s)	295, 397, 468, 845, 869, 926
BsmFI	GGGAC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	1046
BsnI	GGCC	2 cut(s)	65, 950
Bso31I	GGTCTC	2 cut(s)	397, 468
Bsp1286I	GDGCHC	2 cut(s)	739, 1153
Bsp143I	GATC	4 cut(s)	216, 655, 780, 1177
BspACI	CCGC	1 cut(s)	995
BspANI	GGCC	2 cut(s)	65, 950
BspCNI	CTCAG	2 cut(s)	715, 803
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	451
BspPI	GGATC	2 cut(s)	211, 1172
BspQI	GCTCTTC	1 cut(s)	1008
BspTNI	GGTCTC	2 cut(s)	397, 468
BsrFI	RCCGGY	1 cut(s)	1079
BsrI	ACTGG	1 cut(s)	1036
BssAI	RCCGGY	1 cut(s)	1079
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	4 cut(s)	216, 655, 780, 1177
BssNAI	GTATAC	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	148
Bst1107I	GTATAC	1 cut(s)	547
Bst2UI	CCWGG	2 cut(s)	471, 732
Bst4CI	ACNGT	2 cut(s)	187, 1172
Bst6I	CTCTTC	2 cut(s)	33, 1008
BstC8I	GCNNGC	5 cut(s)	538, 1039, 1081, 1085, 1153
BstDEI	CTNAG	4 cut(s)	178, 427, 702, 790
BstFNI	CGCG	1 cut(s)	451
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	526, 1079
BstKTI	GATC	4 cut(s)	219, 658, 783, 1180
BstMAI	GTCTC	6 cut(s)	295, 397, 468, 845, 869, 926
BstMBI	GATC	4 cut(s)	216, 655, 780, 1177
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 523, 593, 1043, 1076, 1121, 1148
BstNI	CCWGG	2 cut(s)	471, 732
BstNSI	RCATGY	3 cut(s)	346, 921, 1087
BstSCI	CCNGG	3 cut(s)	469, 730, 1137
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	5 cut(s)	244, 265, 1099, 1121, 1143
BstV2I	GAAGAC	3 cut(s)	87, 714, 1154
BstX2I	RGATCY	2 cut(s)	216, 1177
BstYI	RGATCY	2 cut(s)	216, 1177
BstZ17I	GTATAC	1 cut(s)	547
Bsu15I	ATCGAT	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	790
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	65, 950
BsuTUI	ATCGAT	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	1056
BtsIMutI	CAGTG	2 cut(s)	878, 1029
Cac8I	GCNNGC	5 cut(s)	538, 1039, 1081, 1085, 1153
CfoI	GCGC	2 cut(s)	526, 1079
Cfr10I	RCCGGY	1 cut(s)	1079
ClaI	ATCGAT	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	453, 1173, 1190
CviAII	CATG	7 cut(s)	17, 343, 708, 748, 800, 918, 1084
CviQI	GTAC	3 cut(s)	453, 1173, 1190
DdeI	CTNAG	4 cut(s)	178, 427, 702, 790
DpnI	GATC	4 cut(s)	218, 657, 782, 1179
DpnII	GATC	4 cut(s)	216, 655, 780, 1177
DrdI	GACNNNNNNGTC	2 cut(s)	680, 718
DseDI	GACNNNNNNGTC	2 cut(s)	680, 718
Eam1104I	CTCTTC	2 cut(s)	33, 1008
EarI	CTCTTC	2 cut(s)	33, 1008
Ecl136II	GAGCTC	1 cut(s)	1151
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	1153
Eco31I	GGTCTC	2 cut(s)	397, 468
Eco47III	AGCGCT	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	1151
Eco57I	CTGAAG	2 cut(s)	902, 965
Eco81I	CCTNAGG	1 cut(s)	790
EcoICRI	GAGCTC	1 cut(s)	1151
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	469, 730
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	1048
EcoT38I	GRGCYC	1 cut(s)	1153
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	7 cut(s)	20, 346, 711, 751, 803, 921, 1087
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	7 cut(s)	16, 342, 707, 747, 799, 917, 1083
FauNDI	CATATG	1 cut(s)	1073
FblI	GTMKAC	2 cut(s)	546, 1023
Fnu4HI	GCNGC	5 cut(s)	258, 279, 1113, 1132, 1135
FriOI	GRGCYC	1 cut(s)	1153
Fsp4HI	GCNGC	5 cut(s)	258, 279, 1113, 1132, 1135
FspBI	CTAG	4 cut(s)	81, 228, 527, 1182
GlaI	GCGC	2 cut(s)	525, 1078
GluI	GCNGC	5 cut(s)	258, 279, 1113, 1132, 1135
GsuI	CTGGAG	3 cut(s)	52, 492, 993
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	65, 950
HapII	CCGG	6 cut(s)	48, 62, 131, 972, 1080, 1138
HhaI	GCGC	2 cut(s)	526, 1079
Hin1II	CATG	7 cut(s)	20, 346, 711, 751, 803, 921, 1087
Hin6I	GCGC	2 cut(s)	524, 1077
HinP1I	GCGC	2 cut(s)	524, 1077
HincII	GTYRAC	2 cut(s)	270, 433
HindII	GTYRAC	2 cut(s)	270, 433
HindIII	AAGCTT	1 cut(s)	865
HinfI	GANTC	7 cut(s)	75, 113, 162, 191, 326, 842, 896
HpaI	GTTAAC	1 cut(s)	270
HpaII	CCGG	6 cut(s)	48, 62, 131, 972, 1080, 1138
HphI	GGTGA	3 cut(s)	402, 806, 1160
Hpy166II	GTNNAC	6 cut(s)	270, 433, 547, 737, 797, 1024
Hpy188I	TCNGA	4 cut(s)	221, 705, 931, 989
Hpy188III	TCNNGA	6 cut(s)	69, 300, 689, 784, 848, 1010
Hpy8I	GTNNAC	6 cut(s)	270, 433, 547, 737, 797, 1024
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	940
HpyCH4III	ACNGT	2 cut(s)	187, 1172
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	6 cut(s)	241, 260, 587, 737, 1046, 1131
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 523, 593, 1043, 1076, 1121, 1148
HpyF3I	CTNAG	4 cut(s)	178, 427, 702, 790
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	7 cut(s)	20, 346, 711, 751, 803, 921, 1087
HspAI	GCGC	2 cut(s)	524, 1077
KroI	GCCGGC	1 cut(s)	1079
KroNI	GCCGGC	1 cut(s)	1081
KspAI	GTTAAC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	216, 655, 780, 1177
LguI	GCTCTTC	1 cut(s)	1008
LmnI	GCTCC	3 cut(s)	352, 1055, 1148
Lsp1109I	GCAGC	5 cut(s)	244, 265, 1099, 1121, 1143
LweI	GCATC	1 cut(s)	1033
MaeI	CTAG	4 cut(s)	81, 228, 527, 1182
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	3 cut(s)	486, 784, 1101
MalI	GATC	4 cut(s)	218, 657, 782, 1179
MboI	GATC	4 cut(s)	216, 655, 780, 1177
MflI	RGATCY	2 cut(s)	216, 1177
MhlI	GDGCHC	2 cut(s)	739, 1153
MluCI	AATT	5 cut(s)	295, 406, 694, 773, 1002
MluI	ACGCGT	1 cut(s)	449
MlyI	GAGTC	2 cut(s)	320, 890
MmeI	TCCRAC	3 cut(s)	327, 852, 938
Mph1103I	ATGCAT	1 cut(s)	1048
MroNI	GCCGGC	1 cut(s)	1079
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	2 cut(s)	269, 809
MspA1I	CMGCKG	2 cut(s)	995, 1134
MspI	CCGG	6 cut(s)	48, 62, 131, 972, 1080, 1138
MspR9I	CCNGG	3 cut(s)	471, 732, 1139
Mva1269I	GAATGC	1 cut(s)	1046
MvaI	CCWGG	2 cut(s)	471, 732
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	7 cut(s)	263, 523, 593, 1043, 1076, 1121, 1148
NaeI	GCCGGC	1 cut(s)	1081
NciI	CCSGG	1 cut(s)	1139
NdeI	CATATG	1 cut(s)	1073
NdeII	GATC	4 cut(s)	216, 655, 780, 1177
NgoMIV	GCCGGC	1 cut(s)	1079
NlaIII	CATG	7 cut(s)	20, 346, 711, 751, 803, 921, 1087
NmuCI	GTSAC	1 cut(s)	784
NsiI	ATGCAT	1 cut(s)	1048
NspI	RCATGY	3 cut(s)	346, 921, 1087
PaeI	GCATGC	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	917
PciSI	GCTCTTC	1 cut(s)	1008
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PctI	GAATGC	1 cut(s)	1046
PdiI	GCCGGC	1 cut(s)	1081
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	5 cut(s)	75, 113, 162, 191, 842
PkrI	GCNGC	5 cut(s)	259, 280, 1114, 1133, 1136
PleI	GAGTC	2 cut(s)	320, 890
PpsI	GAGTC	2 cut(s)	320, 890
PscI	ACATGT	1 cut(s)	917
Psp124BI	GAGCTC	1 cut(s)	1153
Psp6I	CCWGG	2 cut(s)	469, 730
PspGI	CCWGG	2 cut(s)	469, 730
PsuI	RGATCY	2 cut(s)	216, 1177
PvuII	CAGCTG	1 cut(s)	1134
RsaI	GTAC	3 cut(s)	454, 1174, 1191
RsaNI	GTAC	3 cut(s)	453, 1173, 1190
SacI	GAGCTC	1 cut(s)	1153
SapI	GCTCTTC	1 cut(s)	1008
SaqAI	TTAA	2 cut(s)	269, 809
SatI	GCNGC	5 cut(s)	258, 279, 1113, 1132, 1135
Sau3AI	GATC	4 cut(s)	216, 655, 780, 1177
SchI	GAGTC	2 cut(s)	320, 890
ScrFI	CCNGG	3 cut(s)	471, 732, 1139
SduI	GDGCHC	2 cut(s)	739, 1153
SfaNI	GCATC	1 cut(s)	1033
SfcI	CTRYAG	1 cut(s)	168
SmlI	CTYRAG	4 cut(s)	201, 330, 846, 1116
SmoI	CTYRAG	4 cut(s)	201, 330, 846, 1116
SphI	GCATGC	1 cut(s)	1087
Sse9I	AATT	5 cut(s)	295, 406, 694, 773, 1002
SsiI	CCGC	1 cut(s)	995
SspMI	CTAG	4 cut(s)	81, 228, 527, 1182
SstI	GAGCTC	1 cut(s)	1153
StyD4I	CCNGG	3 cut(s)	469, 730, 1137
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	187, 1172
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	3 cut(s)	111, 299, 509
TaqII	GACCGA	1 cut(s)	546
TasI	AATT	5 cut(s)	295, 406, 694, 773, 1002
TfiI	GAWTC	5 cut(s)	75, 113, 162, 191, 842
Tru1I	TTAA	2 cut(s)	269, 809
Tru9I	TTAA	2 cut(s)	269, 809
TscAI	CASTG	2 cut(s)	885, 1036
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	5 cut(s)	257, 278, 1112, 1131, 1134
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	2 cut(s)	915, 1039
TspRI	CASTG	2 cut(s)	885, 1036
VneI	GTGCAC	1 cut(s)	735
XapI	RAATTY	4 cut(s)	295, 694, 773, 1002
XceI	RCATGY	3 cut(s)	346, 921, 1087
XmiI	GTMKAC	2 cut(s)	546, 1023
XmnI	GAANNNNTTC	1 cut(s)	94
XspI	CTAG	4 cut(s)	81, 228, 527, 1182
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.