Rroxscaffold_7G00182580

Belongs to the carbohydrate kinase PfkB family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
21667122 .. 21672302
5181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182580.1

Sequence Viewer

Length: 1272 bp
ATGCTGTCTCTTCTTTATACGACCCCAAAAGCCAACTCCACCTCTCCTCTCGTCAGCTTACCTCACTATTCTTCTCCTTCAACTCCTCCTCCTTTTCACACTTCACCTTCAAAAGCTCACCACAGCTTATCTCTATCTTCTTCACCACGTCGCTCAACCAGGTTCAAAATGTCGTCCTCCGATTCGCTTCCCCCTCTCCCGGACAACCGGACCGTGCTTGGTGTGGGCAGCATGGGGCTGGATTTCTTGGCGGTCGTGTCCTCTTATCCTAAGCCGGACGATAAGATCAGGACCACCAGCTTGAAGGTTCAAGGAGGTGGAAATGCCAGTAATGCTTTAACTTGTGTGGCTCGTTTGGGGCTAAGTCCCAGGGTCATTTCCAAGGTTGCGGATGATACACAAGGCAGGGGTATACTGGAGGAGCTACAAGCCGCAGGCGTAGATACTTCTTTTGTTGTGGTTGCTGAGGAGGGTAATTCACCATTTACCTACATTATTGTTGACAATGAAACGAATACTCGTACGTGTATTCATACTGAAGGATATCCTCCTATGATACCGGATGACCTTTCGCCTTCAAGTTTATCGTCTGCACTGGATGGAGCAAGACTTGCTTATTTTGATGGACGTCTACATGAAACTGCTTTACTTATTGCACAGGAGGCTACTCGCCGGAACATACCTATATTAATTGAGGCTGAAAGGATAAGAGAAGGGTTGGATGATCTTCTAAACTTGTCTGAGTATGCCATATGCTCAGCAAAATTTCCAAAGGCATGGACAGGAGCAGAAACTTTTCCAAGTGCTCTTGTTTCAATGCTTTTGAAATTGCCAAAGCTCAAATTTGCAATTGTGACCTTGGGTGAAGATGGATGCATAATGCTTGAGAGAAATATAGAAGAGGCTCCTCAGATGGAAGAAATGGACGTGGACAGCTTATTCGAAGCGCTGAAGCAGAGAAGGGATGACAGCATAACCAGACCAACATATGTTTCATCTCCAGTTACAAAATTGAGAGCCAATGGAATAGGGACAGTGTGTGGAAGGCTGTTTGTGGGAACAGCTGAGAAAATACCACCCTCTGAGCTTGTAGATACAACAGGTGCTGGAGATAGTTTTATTGGAGCAGTTATTTATGCTTTTTGCACCAACATGCCACCAGAGAAAATGCTCCCTTTTGCTGCTCAAGTGGCTGCTGCCTGCTGTAGAGGTTTGGGAGCACGAACTAGTCTTCCACTCCGCACAGATCCACTCTTGGCACCATTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

423

Amino Acids

45.46

Weight (kDa)

5.65

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 73 - 297 7.9e-22 pfkB family carbohydrate kinase
PfkB PF00294 355 - 412 2.1e-13 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 1258
AccI GTMKAC 2 cut(s) 412, 631
AciI CCGC 4 cut(s) 251, 389, 432, 1240
AclWI GGATC 1 cut(s) 1241
AcsI RAATTY 2 cut(s) 764, 842
AcuI CTGAAG 2 cut(s) 558, 971
AcyI GRCGYC 1 cut(s) 628
AfaI GTAC 1 cut(s) 523
AfeI AGCGCT 1 cut(s) 948
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 8 cut(s) 81, 111, 166, 304, 311, 579, 816, 826
AhlI ACTAGT 1 cut(s) 1226
AjiI CACGTC 2 cut(s) 149, 928
AjnI CCWGG 2 cut(s) 158, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 976, 1008
AloI GAACNNNNNNTCC 2 cut(s) 1216, 1248
AluBI AGCT 9 cut(s) 57, 116, 126, 300, 424, 838, 936, 1064, 1087
AluI AGCT 9 cut(s) 57, 116, 126, 300, 424, 838, 936, 1064, 1087
Alw21I GWGCWC 2 cut(s) 808, 1222
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 1241
AlwNI CAGNNNCTG 1 cut(s) 1106
Aor51HI AGCGCT 1 cut(s) 948
ApeKI GCWGC 4 cut(s) 228, 1181, 1193, 1196
ApoI RAATTY 2 cut(s) 764, 842
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AseI ATTAAT 1 cut(s) 689
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 949
AspS9I GGNCC 2 cut(s) 210, 291
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 5 cut(s) 96, 110, 135, 471, 875
AsuII TTCGAA 1 cut(s) 942
AvaII GGWCC 2 cut(s) 210, 291
BanI GGYRCC 1 cut(s) 1258
BbsI GAAGAC 1 cut(s) 1223
Bbv12I GWGCWC 2 cut(s) 808, 1222
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 240, 1168, 1180, 1183
BccI CCATC 4 cut(s) 593, 617, 863, 907
BciT130I CCWGG 2 cut(s) 160, 370
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 12
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 1 cut(s) 1227
BfmI CTRYAG 1 cut(s) 1204
BfoI RGCGCY 1 cut(s) 950
BisI GCNGC 5 cut(s) 229, 432, 1182, 1194, 1197
BlpI GCTNAGC 1 cut(s) 757
BlsI GCNGC 5 cut(s) 230, 433, 1183, 1195, 1198
Bme1390I CCNGG 3 cut(s) 160, 200, 370
Bme18I GGWCC 2 cut(s) 210, 291
BmgBI CACGTC 2 cut(s) 149, 928
BmgT120I GGNCC 2 cut(s) 210, 291
BmiI GGNNCC 2 cut(s) 906, 1260
BmrFI CCNGG 3 cut(s) 160, 200, 370
BmsI GCATC 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 1223
BpmI CTGGAG 3 cut(s) 437, 984, 1128
Bpu10I CCTNAGC 2 cut(s) 270, 465
Bpu1102I GCTNAGC 1 cut(s) 757
Bpu14I TTCGAA 1 cut(s) 942
BpuEI CTTGAG 2 cut(s) 905, 1170
BpuMI CCSGG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 4 cut(s) 368, 369, 381, 858
BsaWI WCCGGW 2 cut(s) 207, 559
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 4 cut(s) 327, 420, 600, 1001
BseBI CCWGG 2 cut(s) 160, 370
BseDI CCNNGG 4 cut(s) 368, 369, 381, 858
BseGI GGATG 6 cut(s) 397, 568, 604, 727, 878, 970
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 6 cut(s) 456, 732, 771, 923, 1056, 1074
BseNI ACTGG 4 cut(s) 327, 420, 600, 1001
BseRI GAGGAG 6 cut(s) 36, 75, 78, 434, 482, 897
BseXI GCAGC 4 cut(s) 240, 1168, 1180, 1183
BsgI GTGCAG 1 cut(s) 576
Bsh1285I CGRYCG 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 1258
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 808, 1222
BsiSI CCGG 5 cut(s) 200, 208, 275, 560, 673
BsiWI CGTACG 1 cut(s) 521
BslFI GGGAC 2 cut(s) 351, 1045
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 351, 1045
Bsp119I TTCGAA 1 cut(s) 942
Bsp1286I GDGCHC 2 cut(s) 808, 1222
Bsp143I GATC 3 cut(s) 285, 724, 1246
Bsp1720I GCTNAGC 1 cut(s) 757
BspACI CCGC 4 cut(s) 251, 389, 432, 1240
BspCNI CTCAG 6 cut(s) 457, 733, 770, 922, 1057, 1075
BspLI GGNNCC 2 cut(s) 906, 1260
BspPI GGATC 1 cut(s) 1241
BspT104I TTCGAA 1 cut(s) 942
BspT107I GGYRCC 1 cut(s) 1258
BsrI ACTGG 4 cut(s) 327, 420, 600, 1001
BssECI CCNNGG 4 cut(s) 368, 369, 381, 858
BssMI GATC 3 cut(s) 285, 724, 1246
BssNAI GTATAC 1 cut(s) 413
BssNI GRCGYC 1 cut(s) 628
BssT1I CCWWGG 2 cut(s) 381, 858
Bst1107I GTATAC 1 cut(s) 413
Bst2UI CCWGG 2 cut(s) 160, 370
Bst4CI ACNGT 2 cut(s) 214, 1036
Bst6I CTCTTC 2 cut(s) 15, 894
BstACI GRCGYC 1 cut(s) 628
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 525
BstBI TTCGAA 1 cut(s) 942
BstC8I GCNNGC 2 cut(s) 436, 1201
BstDEI CTNAG 8 cut(s) 270, 362, 465, 741, 757, 909, 1065, 1083
BstF5I GGATG 6 cut(s) 397, 568, 604, 727, 878, 970
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 1 cut(s) 949
BstKTI GATC 3 cut(s) 288, 727, 1249
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 285, 724, 1246
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 4 cut(s) 332, 611, 662, 1190
BstNI CCWGG 2 cut(s) 160, 370
BstNSI RCATGY 1 cut(s) 1156
BstSCI CCNGG 3 cut(s) 158, 198, 368
BstSFI CTRYAG 1 cut(s) 1204
BstV1I GCAGC 4 cut(s) 240, 1168, 1180, 1183
BstV2I GAAGAC 1 cut(s) 1223
BstX2I RGATCY 1 cut(s) 1246
BstXI CCANNNNNNTGG 1 cut(s) 777
BstYI RGATCY 1 cut(s) 1246
BstZ17I GTATAC 1 cut(s) 413
BtrI CACGTC 2 cut(s) 149, 928
BtsCI GGATG 6 cut(s) 397, 568, 604, 727, 878, 970
BtsIMutI CAGTG 2 cut(s) 593, 1041
Cac8I GCNNGC 2 cut(s) 436, 1201
CaiI CAGNNNCTG 1 cut(s) 1106
CfoI GCGC 1 cut(s) 949
Cfr13I GGNCC 2 cut(s) 210, 291
CpoI CGGWCCG 1 cut(s) 210
CsiI ACCWGGT 1 cut(s) 158
Csp6I GTAC 1 cut(s) 522
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 4 cut(s) 232, 635, 777, 1153
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 8 cut(s) 270, 362, 465, 741, 757, 909, 1065, 1083
DpnI GATC 3 cut(s) 287, 726, 1248
DpnII GATC 3 cut(s) 285, 724, 1246
Eam1104I CTCTTC 2 cut(s) 15, 894
EarI CTCTTC 2 cut(s) 15, 894
Eco130I CCWWGG 2 cut(s) 381, 858
Eco32I GATATC 1 cut(s) 545
Eco47I GGWCC 2 cut(s) 210, 291
Eco47III AGCGCT 1 cut(s) 948
Eco57I CTGAAG 2 cut(s) 558, 971
EcoRII CCWGG 2 cut(s) 158, 368
EcoRV GATATC 1 cut(s) 545
EcoT14I CCWWGG 2 cut(s) 381, 858
EcoT22I ATGCAT 1 cut(s) 878
ErhI CCWWGG 2 cut(s) 381, 858
FaeI CATG 4 cut(s) 235, 638, 780, 1156
FalI AAGNNNNNCTT 2 cut(s) 598, 630
FaqI GGGAC 2 cut(s) 351, 1045
FatI CATG 4 cut(s) 231, 634, 776, 1152
FauNDI CATATG 2 cut(s) 752, 988
FblI GTMKAC 2 cut(s) 412, 631
Fnu4HI GCNGC 5 cut(s) 229, 432, 1182, 1194, 1197
FokI GGATG 6 cut(s) 404, 575, 611, 734, 885, 977
Fsp4HI GCNGC 5 cut(s) 229, 432, 1182, 1194, 1197
FspBI CTAG 1 cut(s) 1227
GlaI GCGC 1 cut(s) 948
GluI GCNGC 5 cut(s) 229, 432, 1182, 1194, 1197
GsuI CTGGAG 3 cut(s) 437, 984, 1128
HaeII RGCGCY 1 cut(s) 950
HapII CCGG 5 cut(s) 200, 208, 275, 560, 673
HhaI GCGC 1 cut(s) 949
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 4 cut(s) 235, 638, 780, 1156
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 1 cut(s) 182
HpaII CCGG 5 cut(s) 200, 208, 275, 560, 673
HphI GGTGA 5 cut(s) 96, 110, 135, 471, 875
Hpy166II GTNNAC 4 cut(s) 413, 502, 632, 931
Hpy188I TCNGA 4 cut(s) 181, 742, 912, 1084
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 4 cut(s) 413, 502, 632, 931
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 8 cut(s) 87, 117, 298, 533, 585, 707, 954, 1038
HpyCH4III ACNGT 2 cut(s) 214, 1036
HpyCH4IV ACGT 4 cut(s) 148, 524, 628, 927
HpyCH4V TGCA 5 cut(s) 593, 656, 848, 876, 1146
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 611, 662, 1190
HpyF3I CTNAG 8 cut(s) 270, 362, 465, 741, 757, 909, 1065, 1083
HpySE526I ACGT 4 cut(s) 148, 524, 628, 927
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 4 cut(s) 235, 638, 780, 1156
HspAI GCGC 1 cut(s) 947
Kzo9I GATC 3 cut(s) 285, 724, 1246
LmnI GCTCC 7 cut(s) 421, 602, 785, 910, 1124, 1176, 1217
Lsp1109I GCAGC 4 cut(s) 240, 1168, 1180, 1183
LweI GCATC 1 cut(s) 863
MabI ACCWGGT 1 cut(s) 158
MaeI CTAG 1 cut(s) 1227
MaeII ACGT 4 cut(s) 148, 524, 628, 927
MaeIII GTNAC 2 cut(s) 853, 1003
MalI GATC 3 cut(s) 287, 726, 1248
MboI GATC 3 cut(s) 285, 724, 1246
MboII GAAGA 8 cut(s) 63, 129, 132, 719, 878, 911, 929, 1223
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 1 cut(s) 1246
MhlI GDGCHC 2 cut(s) 808, 1222
MluCI AATT 7 cut(s) 475, 690, 764, 827, 842, 849, 1010
MmeI TCCRAC 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 878
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 2 cut(s) 338, 689
MslI CAYNNNNRTG 2 cut(s) 1151, 1267
MspA1I CMGCKG 1 cut(s) 1064
MspI CCGG 5 cut(s) 200, 208, 275, 560, 673
MspR9I CCNGG 3 cut(s) 160, 200, 370
MunI CAATTG 1 cut(s) 849
MvaI CCWGG 2 cut(s) 160, 370
MwoI GCNNNNNNNGC 4 cut(s) 332, 611, 662, 1190
NciI CCSGG 1 cut(s) 200
NdeI CATATG 2 cut(s) 752, 988
NdeII GATC 3 cut(s) 285, 724, 1246
NlaIII CATG 4 cut(s) 235, 638, 780, 1156
NlaIV GGNNCC 2 cut(s) 906, 1260
NmuCI GTSAC 1 cut(s) 853
NsiI ATGCAT 1 cut(s) 878
NspI RCATGY 1 cut(s) 1156
NspV TTCGAA 1 cut(s) 942
PasI CCCWGGG 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 182
Pfl23II CGTACG 1 cut(s) 521
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 5 cut(s) 230, 433, 1183, 1195, 1198
Ppu21I YACGTR 1 cut(s) 525
PshBI ATTAAT 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 158, 368
PspGI CCWGG 2 cut(s) 158, 368
PspLI CGTACG 1 cut(s) 521
PspN4I GGNNCC 2 cut(s) 906, 1260
PspPI GGNCC 2 cut(s) 210, 291
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 1 cut(s) 1246
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 2 cut(s) 1151, 1267
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 338, 689
SatI GCNGC 5 cut(s) 229, 432, 1182, 1194, 1197
Sau3AI GATC 3 cut(s) 285, 724, 1246
Sau96I GGNCC 2 cut(s) 210, 291
ScrFI CCNGG 3 cut(s) 160, 200, 370
SduI GDGCHC 2 cut(s) 808, 1222
SexAI ACCWGGT 1 cut(s) 158
SfaNI GCATC 1 cut(s) 863
SfcI CTRYAG 1 cut(s) 1204
SfuI TTCGAA 1 cut(s) 942
SinI GGWCC 2 cut(s) 210, 291
SmiMI CAYNNNNRTG 2 cut(s) 1151, 1267
SmlI CTYRAG 2 cut(s) 884, 1185
SmoI CTYRAG 2 cut(s) 884, 1185
SpeI ACTAGT 1 cut(s) 1226
Sse9I AATT 7 cut(s) 475, 690, 764, 827, 842, 849, 1010
SsiI CCGC 4 cut(s) 251, 389, 432, 1240
SspMI CTAG 1 cut(s) 1227
StyD4I CCNGG 3 cut(s) 158, 198, 368
StyI CCWWGG 2 cut(s) 381, 858
TaaI ACNGT 2 cut(s) 214, 1036
TaiI ACGT 4 cut(s) 151, 527, 631, 930
TaqI TCGA 1 cut(s) 942
TasI AATT 7 cut(s) 475, 690, 764, 827, 842, 849, 1010
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 338, 689
Tru9I TTAA 2 cut(s) 338, 689
TscAI CASTG 2 cut(s) 600, 1041
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 4 cut(s) 228, 1181, 1193, 1196
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 4 cut(s) 521, 522, 651, 984
TspRI CASTG 2 cut(s) 600, 1041
VpaK11BI GGWCC 2 cut(s) 210, 291
VspI ATTAAT 1 cut(s) 689
XapI RAATTY 2 cut(s) 764, 842
XceI RCATGY 1 cut(s) 1156
XmiI GTMKAC 2 cut(s) 412, 631
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 1 cut(s) 1227
ZraI GACGTC 1 cut(s) 629
Zsp2I ATGCAT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.