Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004679

Physical Location & Seq

Genomic Coordinates Forward (+)

20344723 .. 20349663

Gene Structure 4941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGCTGTCTTTCGTGTACACTACCCCAAAAGCCAACTCCACCTCTCCTCTCGTCAGCAGCTTACCTCACTATTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTGTCAAACTACACCTTCAAACACTCACCACAGCCTATCTCTATCTTCCTCACCACGTCGCTCAACCAGGTTCAAAATGTCGTCCTCCGATTCGCTTCCCCCTCTCCCGGAAAACCGCACCGTGCTTGGTGTGGGCAGCATGGGGCTGGATTTCTTGGCGGTCGTTTCCTCTTATCCTAAGCCGGACGATAAGATCAGGACCACCAGCTTGAAGGTTCAAGGAGGTGGAAATGCCAGTAATGCTTTAACTTGTGTGGCTCGTTTGGGGCTACGTCCCAGGGTCATTTCCAAGGTTGCGGATGATACACAAGGCAGGGGTATACTGGAGGAGCTACAAGCCGAAGGAGTAGATACTTCTTTCGTTGTGGTTGCTGAGGAGGGTAATTCACCATTTACCTACATTATTGTTGAAAATGAAACGAATACTCGTACGTGTATTCATACTGAAGGATATCCTCCTATGATACCGGATGACCTTTCGCCTTCAAGTTTATTGTCTGCACTGGATGGAGCAAGACTTGTTTATTTTGATGGACGTCTACATGAAACTGCTTTACTTATTGCACAGGAGGCTACTCGCCGGAACATACCCATATTAATTGAGGCTGAAAGGATAAGAGAAGGGTTGGATGATCTTCTAAACTTGTCTGAGTATGCCATATGCTCAGCAAAATTTCCAAAGGCATGGACAGGAGCAGAAACTTTTCCAAGTGCTCTTGTTTCAATGCTTTTGAAATTGCCAGAGCTCAAATTTGCAATTGTGACCTTGGGTGAAGATGGATGCATAATGCTTGAGAGAAATATAGAAGAGGCTCCTCAGACGGAAGAAATGGACGTGGACAGCTTATTCGAAGCGCTGAAGCAGAGAAAGGATGACAGCATAACCAAACCAACATATGTTTCATCTCCAGTTACAAAGTTGAGAGCCAATGGAATAGGGACAGTGTGTGGAAGGCTGTTTGTGGGAACAGCTGAGAAAATACCACCCTCTGAGCTTGTAGATACAACGGGTGCTGGAGATAGTTTTATTGGGGCAGTTATTTATGCTGTTTGCGCCAACATGCCACCAGAGAAAATGCTCCCTTTTGCTGCTCAAGTGGCAGCTGCCTGCTGTAGAGGTTTGGGAGCACGAACTAGTCTTCCACACCGCACAGATCCACTCTTGGCACCTTTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

429

Amino Acids

45.91

Weight (kDa)

5.34

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	78 - 303	1.3e-22	pfkB family carbohydrate kinase
PfkB	PF00294	360 - 418	2.2e-13	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28706 AT4G28706 AT4G28706 AT4G28706 AT5G43910 AT5G43910 AT5G43910 AT5G43910 AT5G43910
fragaria_vesca	FvH4_2g20180 FvH4_2g20180 FvH4_2g20180 FvH4_2g20180
malus_domestica	MD05G1185300.v1.1 MD10G1173500.v1.1
prunus_persica	Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1
pyrus_communis	pycom05g17010 pycom10g14960
rosa_chinensis	RchiOBHm_Chr6g0285941
rosa_laevigata	RLG00000012595
rosa_multiflora	Rmu_sc0004808.1_g000008
rosa_roxburghii	Rroxscaffold_7G00182580
rosa_rugosa	Rorug06G0177600 Rorug06G0177600
rosa_samantha	Rh6AG289700 Rh6BG291600 Rh6CG292500 Rh6DG284600
rosa_wichuraiana	Rw6G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	1273
AccI	GTMKAC	2 cut(s)	427, 646
AciI	CCGC	4 cut(s)	223, 266, 404, 1255
AclWI	GGATC	1 cut(s)	1256
AcsI	RAATTY	2 cut(s)	779, 857
AcuI	CTGAAG	2 cut(s)	573, 986
AcyI	GRCGYC	1 cut(s)	643
AfaI	GTAC	2 cut(s)	17, 538
AfeI	AGCGCT	1 cut(s)	963
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	8 cut(s)	126, 181, 319, 326, 518, 594, 831, 841
AhlI	ACTAGT	1 cut(s)	1241
AjiI	CACGTC	2 cut(s)	164, 943
AjnI	CCWGG	2 cut(s)	173, 383
AjuI	GAANNNNNNNTTGG	2 cut(s)	991, 1023
AloI	GAACNNNNNNTCC	2 cut(s)	1231, 1263
AluBI	AGCT	8 cut(s)	60, 315, 439, 853, 951, 1079, 1102, 1211
AluI	AGCT	8 cut(s)	60, 315, 439, 853, 951, 1079, 1102, 1211
Alw21I	GWGCWC	3 cut(s)	823, 855, 1237
AlwI	GGATC	1 cut(s)	1256
Aor51HI	AGCGCT	1 cut(s)	963
ApeKI	GCWGC	5 cut(s)	57, 243, 1196, 1208, 1211
ApoI	RAATTY	2 cut(s)	779, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
AseI	ATTAAT	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	2 cut(s)	964, 1163
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	4 cut(s)	125, 150, 486, 890
AsuII	TTCGAA	1 cut(s)	957
AvaII	GGWCC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	1273
BanII	GRGCYC	1 cut(s)	855
BbsI	GAAGAC	1 cut(s)	1238
Bbv12I	GWGCWC	3 cut(s)	823, 855, 1237
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	5 cut(s)	69, 255, 1183, 1198, 1220
BccI	CCATC	3 cut(s)	608, 632, 878
BciT130I	CCWGG	2 cut(s)	175, 385
BcnI	CCSGG	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	1241
BfaI	CTAG	1 cut(s)	1242
BfmI	CTRYAG	1 cut(s)	1219
BfoI	RGCGCY	1 cut(s)	965
BisI	GCNGC	5 cut(s)	58, 244, 1197, 1209, 1212
BlpI	GCTNAGC	1 cut(s)	772
BlsI	GCNGC	5 cut(s)	59, 245, 1198, 1210, 1213
Bme1390I	CCNGG	3 cut(s)	175, 215, 385
Bme18I	GGWCC	1 cut(s)	306
BmgBI	CACGTC	2 cut(s)	164, 943
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	921, 1275
BmrFI	CCNGG	3 cut(s)	175, 215, 385
BmsI	GCATC	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	1238
BpmI	CTGGAG	3 cut(s)	452, 999, 1143
Bpu10I	CCTNAGC	2 cut(s)	285, 480
Bpu1102I	GCTNAGC	1 cut(s)	772
Bpu14I	TTCGAA	1 cut(s)	957
BpuEI	CTTGAG	2 cut(s)	920, 1185
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	643
BsaJI	CCNNGG	4 cut(s)	383, 384, 396, 873
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	4 cut(s)	342, 435, 615, 1016
BseBI	CCWGG	2 cut(s)	175, 385
BseDI	CCNNGG	4 cut(s)	383, 384, 396, 873
BseGI	GGATG	6 cut(s)	412, 583, 619, 742, 893, 985
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	6 cut(s)	471, 747, 786, 938, 1071, 1089
BseNI	ACTGG	4 cut(s)	342, 435, 615, 1016
BseRI	GAGGAG	4 cut(s)	36, 449, 497, 912
BseXI	GCAGC	5 cut(s)	69, 255, 1183, 1198, 1220
BsgI	GTGCAG	1 cut(s)	591
Bsh1285I	CGRYCG	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	1273
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	3 cut(s)	823, 855, 1237
BsiSI	CCGG	4 cut(s)	215, 290, 575, 688
BsiWI	CGTACG	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	366, 1060
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	366, 1060
Bsp119I	TTCGAA	1 cut(s)	957
Bsp1286I	GDGCHC	3 cut(s)	823, 855, 1237
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	300, 739, 1261
Bsp1720I	GCTNAGC	1 cut(s)	772
BspACI	CCGC	4 cut(s)	223, 266, 404, 1255
BspCNI	CTCAG	6 cut(s)	472, 748, 785, 937, 1072, 1090
BspLI	GGNNCC	2 cut(s)	921, 1275
BspPI	GGATC	1 cut(s)	1256
BspT104I	TTCGAA	1 cut(s)	957
BspT107I	GGYRCC	1 cut(s)	1273
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	4 cut(s)	342, 435, 615, 1016
BssECI	CCNNGG	4 cut(s)	383, 384, 396, 873
BssMI	GATC	3 cut(s)	300, 739, 1261
BssNAI	GTATAC	1 cut(s)	428
BssNI	GRCGYC	1 cut(s)	643
BssT1I	CCWWGG	2 cut(s)	396, 873
Bst1107I	GTATAC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	175, 385
Bst4CI	ACNGT	2 cut(s)	229, 1051
Bst6I	CTCTTC	1 cut(s)	909
BstACI	GRCGYC	1 cut(s)	643
BstAUI	TGTACA	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	540
BstBI	TTCGAA	1 cut(s)	957
BstC8I	GCNNGC	1 cut(s)	1216
BstDEI	CTNAG	7 cut(s)	285, 480, 756, 772, 924, 1080, 1098
BstF5I	GGATG	6 cut(s)	412, 583, 619, 742, 893, 985
BstH2I	RGCGCY	1 cut(s)	965
BstHHI	GCGC	2 cut(s)	964, 1163
BstKTI	GATC	3 cut(s)	303, 742, 1264
BstMBI	GATC	3 cut(s)	300, 739, 1261
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 677, 1160, 1205
BstNI	CCWGG	2 cut(s)	175, 385
BstNSI	RCATGY	1 cut(s)	1171
BstSCI	CCNGG	3 cut(s)	173, 213, 383
BstSFI	CTRYAG	1 cut(s)	1219
BstV1I	GCAGC	5 cut(s)	69, 255, 1183, 1198, 1220
BstV2I	GAAGAC	1 cut(s)	1238
BstX2I	RGATCY	1 cut(s)	1261
BstXI	CCANNNNNNTGG	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	1261
BstZ17I	GTATAC	1 cut(s)	428
BtrI	CACGTC	2 cut(s)	164, 943
BtsCI	GGATG	6 cut(s)	412, 583, 619, 742, 893, 985
BtsIMutI	CAGTG	2 cut(s)	608, 1056
Cac8I	GCNNGC	1 cut(s)	1216
CfoI	GCGC	2 cut(s)	964, 1163
Cfr13I	GGNCC	1 cut(s)	306
CsiI	ACCWGGT	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	16, 537
CviAII	CATG	4 cut(s)	247, 650, 792, 1168
CviQI	GTAC	2 cut(s)	16, 537
DdeI	CTNAG	7 cut(s)	285, 480, 756, 772, 924, 1080, 1098
DpnI	GATC	3 cut(s)	302, 741, 1263
DpnII	GATC	3 cut(s)	300, 739, 1261
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
Ecl136II	GAGCTC	1 cut(s)	853
Eco130I	CCWWGG	2 cut(s)	396, 873
Eco24I	GRGCYC	1 cut(s)	855
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	306
Eco47III	AGCGCT	1 cut(s)	963
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	573, 986
EcoICRI	GAGCTC	1 cut(s)	853
EcoRII	CCWGG	2 cut(s)	173, 383
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	2 cut(s)	396, 873
EcoT22I	ATGCAT	1 cut(s)	893
EcoT38I	GRGCYC	1 cut(s)	855
ErhI	CCWWGG	2 cut(s)	396, 873
FaeI	CATG	4 cut(s)	250, 653, 795, 1171
FaqI	GGGAC	2 cut(s)	366, 1060
FatI	CATG	4 cut(s)	246, 649, 791, 1167
FauNDI	CATATG	2 cut(s)	767, 1003
FblI	GTMKAC	2 cut(s)	427, 646
Fnu4HI	GCNGC	5 cut(s)	58, 244, 1197, 1209, 1212
FokI	GGATG	6 cut(s)	419, 590, 626, 749, 900, 992
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	5 cut(s)	58, 244, 1197, 1209, 1212
FspBI	CTAG	1 cut(s)	1242
GlaI	GCGC	2 cut(s)	963, 1162
GluI	GCNGC	5 cut(s)	58, 244, 1197, 1209, 1212
GsuI	CTGGAG	3 cut(s)	452, 999, 1143
HaeII	RGCGCY	1 cut(s)	965
HapII	CCGG	4 cut(s)	215, 290, 575, 688
HhaI	GCGC	2 cut(s)	964, 1163
Hin1I	GRCGYC	1 cut(s)	643
Hin1II	CATG	4 cut(s)	250, 653, 795, 1171
Hin6I	GCGC	2 cut(s)	962, 1161
HinP1I	GCGC	2 cut(s)	962, 1161
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	4 cut(s)	215, 290, 575, 688
HphI	GGTGA	4 cut(s)	125, 150, 486, 890
Hpy166II	GTNNAC	5 cut(s)	16, 18, 428, 647, 946
Hpy188I	TCNGA	4 cut(s)	196, 757, 927, 1099
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	5 cut(s)	16, 18, 428, 647, 946
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	7 cut(s)	132, 313, 443, 548, 600, 722, 1053
HpyCH4III	ACNGT	2 cut(s)	229, 1051
HpyCH4IV	ACGT	5 cut(s)	163, 379, 539, 643, 942
HpyCH4V	TGCA	4 cut(s)	608, 671, 863, 891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 677, 1160, 1205
HpyF3I	CTNAG	7 cut(s)	285, 480, 756, 772, 924, 1080, 1098
HpySE526I	ACGT	5 cut(s)	163, 379, 539, 643, 942
Hsp92I	GRCGYC	1 cut(s)	643
Hsp92II	CATG	4 cut(s)	250, 653, 795, 1171
HspAI	GCGC	2 cut(s)	962, 1161
Kzo9I	GATC	3 cut(s)	300, 739, 1261
LmnI	GCTCC	6 cut(s)	436, 617, 800, 925, 1191, 1232
Lsp1109I	GCAGC	5 cut(s)	69, 255, 1183, 1198, 1220
LweI	GCATC	1 cut(s)	878
MabI	ACCWGGT	1 cut(s)	173
MaeI	CTAG	1 cut(s)	1242
MaeII	ACGT	5 cut(s)	163, 379, 539, 643, 942
MaeIII	GTNAC	2 cut(s)	868, 1018
MalI	GATC	3 cut(s)	302, 741, 1263
MboI	GATC	3 cut(s)	300, 739, 1261
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	3 cut(s)	823, 855, 1237
MluCI	AATT	6 cut(s)	490, 705, 779, 842, 857, 864
MmeI	TCCRAC	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	893
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	2 cut(s)	353, 704
MspA1I	CMGCKG	2 cut(s)	1079, 1211
MspI	CCGG	4 cut(s)	215, 290, 575, 688
MspR9I	CCNGG	3 cut(s)	175, 215, 385
MunI	CAATTG	1 cut(s)	864
MvaI	CCWGG	2 cut(s)	175, 385
MwoI	GCNNNNNNNGC	4 cut(s)	347, 677, 1160, 1205
NciI	CCSGG	1 cut(s)	215
NdeI	CATATG	2 cut(s)	767, 1003
NdeII	GATC	3 cut(s)	300, 739, 1261
NlaIII	CATG	4 cut(s)	250, 653, 795, 1171
NlaIV	GGNNCC	2 cut(s)	921, 1275
NmuCI	GTSAC	1 cut(s)	868
NsiI	ATGCAT	1 cut(s)	893
NspI	RCATGY	1 cut(s)	1171
NspV	TTCGAA	1 cut(s)	957
PasI	CCCWGGG	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	197
Pfl23II	CGTACG	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	5 cut(s)	59, 245, 1198, 1210, 1213
Ppu21I	YACGTR	1 cut(s)	540
PshBI	ATTAAT	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	2 cut(s)	173, 383
PspGI	CCWGG	2 cut(s)	173, 383
PspLI	CGTACG	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	921, 1275
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	1261
PvuII	CAGCTG	2 cut(s)	1079, 1211
RsaI	GTAC	2 cut(s)	17, 538
RsaNI	GTAC	2 cut(s)	16, 537
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	2 cut(s)	353, 704
SatI	GCNGC	5 cut(s)	58, 244, 1197, 1209, 1212
Sau3AI	GATC	3 cut(s)	300, 739, 1261
Sau96I	GGNCC	1 cut(s)	306
ScrFI	CCNGG	3 cut(s)	175, 215, 385
SduI	GDGCHC	3 cut(s)	823, 855, 1237
SexAI	ACCWGGT	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	878
SfcI	CTRYAG	1 cut(s)	1219
SfuI	TTCGAA	1 cut(s)	957
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	899, 1200
SmoI	CTYRAG	2 cut(s)	899, 1200
SpeI	ACTAGT	1 cut(s)	1241
Sse9I	AATT	6 cut(s)	490, 705, 779, 842, 857, 864
SsiI	CCGC	4 cut(s)	223, 266, 404, 1255
SspMI	CTAG	1 cut(s)	1242
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	3 cut(s)	173, 213, 383
StyI	CCWWGG	2 cut(s)	396, 873
TaaI	ACNGT	2 cut(s)	229, 1051
TaiI	ACGT	5 cut(s)	166, 382, 542, 646, 945
TaqI	TCGA	1 cut(s)	957
TasI	AATT	6 cut(s)	490, 705, 779, 842, 857, 864
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	353, 704
Tru9I	TTAA	2 cut(s)	353, 704
TscAI	CASTG	2 cut(s)	615, 1056
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	5 cut(s)	57, 243, 1196, 1208, 1211
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	5 cut(s)	69, 536, 537, 666, 999
TspGWI	ACGGA	1 cut(s)	944
TspRI	CASTG	2 cut(s)	615, 1056
VpaK11BI	GGWCC	1 cut(s)	306
VspI	ATTAAT	1 cut(s)	704
XapI	RAATTY	2 cut(s)	779, 857
XceI	RCATGY	1 cut(s)	1171
XmiI	GTMKAC	2 cut(s)	427, 646
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	1 cut(s)	1242
ZraI	GACGTC	1 cut(s)	644
Zsp2I	ATGCAT	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.