Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004679

Physical Location & Seq

Genomic Coordinates Reverse (-)

49206629 .. 49211834

Gene Structure 5206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGCTGTCTCTCGTTTACACCACCCCAAAAGCCAATTCCCCCTCTCCTCTCGTCAGCTTACCCCACTATTCTTCTTCTCCTCCTCCTTTTCAGACTTCACCTTCAAAGACGCACCACACCCTATCTCTACCTTCTTCACCACGTCGCTCAACCAGGTGCAGAATGTCGTCCTCCGATTCGCTTCCCCCTCTCCCGGAAAACCGGACCGTGCTCGGTGTGGGCAGCATGGGGCTGGATTTCTTGGCGGTCGTGTCCTCTTATCCTAAGCCGGACGATAAGATCAGGACCACCAGCTTGAAGGTTCAAGGAGGTGGAAATGCCAGTAATGCTTTAACTTGTGTGGCTCGTTTGGGGCTAAGTCCCAGGGTCATTTCCAAGATTGCGGATGATACACAAGGCAGGGGTATAATGGAGGAGCTACAAGCCGAAGGCGTAGATACTTCGTTTGTTGTGGTTGCTGAGGAGGGTAATTCACCATTTACCTACATTATTGTTGACAATGAAACGAATACTCGTACGTGTATTCATACTGAAGGATATCCTCCTATGATACCGGATGACCTTTCACCTTCAAGTTTATCGTCTGCACTGGATGGAGCAAGACTTGCTTATTTTGATGGACGTCTACATGAAACTGCTTTACTTGTTGCACAGGAGGCTACTCGCCGGAACATACCTATATTAATTGAGGCTGAAAGGATAAGAGAAGGGCTGGATGATCTTCTAAACTTGTCTGAGTATGCCATATGCTCAGTAAAATTTCCAAAGGCATGGACAGGAGCAGAAACTTTTCCAAGTGCTCTTGTTTCAATGCTTTTGAAATTGCCAAAGCTCAAATTTGCAATTGTGACCTTGGGTGAAGATGGATGCATAATGCTTGAGAGAAATCTAGAAGAGGCTCCTCAGACGGAAGAAATTGACGTGGACAGCTTATTCGAAGCACTGAAGCAGAGAAAGGATGACAGCTTAACCAAACCAACATATGTTTCATCTCCAGTTACAAAATTGAGAGCCAATGGAATAGGGACAGTGTGCGGAAGGTTGTTTGTGGGAACAGCTGAGAAAATACCACCCTCTGAGCTTCTAGATACAACGGGTGCTGGAGATAGTTTTATTGGAGCAGTTATTTATGCTGTTTGCACCAACATGCCACCAGAGAAAATGCTCCCTTTTGCTGCTCAAGTGGCTGCTGCCTGCTGTAGAGGTTTGGGAGCACGAACTAGTCTTCCACACCTCACAGATCCACTCTTGGCACCATTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

421

Amino Acids

45.23

Weight (kDa)

5.42

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	71 - 296	1.3e-21	pfkB family carbohydrate kinase
PfkB	PF00294	353 - 411	2.9e-12	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28706 AT4G28706 AT4G28706 AT4G28706 AT5G43910 AT5G43910 AT5G43910 AT5G43910 AT5G43910
fragaria_vesca	FvH4_2g20180 FvH4_2g20180 FvH4_2g20180 FvH4_2g20180
malus_domestica	MD05G1185300.v1.1 MD10G1173500.v1.1
prunus_persica	Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1
pyrus_communis	pycom05g17010 pycom10g14960
rosa_chinensis	RchiOBHm_Chr6g0285941
rosa_laevigata	RLG00000012595
rosa_multiflora	Rmu_sc0004808.1_g000008
rosa_roxburghii	Rroxscaffold_7G00182580
rosa_rugosa	Rorug06G0177600 Rorug06G0177600
rosa_samantha	Rh6AG289700 Rh6BG291600 Rh6CG292500 Rh6DG284600
rosa_wichuraiana	Rw6G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	1252
AccI	GTMKAC	1 cut(s)	625
AciI	CCGC	3 cut(s)	245, 383, 1035
AclWI	GGATC	1 cut(s)	1235
AcsI	RAATTY	2 cut(s)	758, 836
AcuI	CTGAAG	2 cut(s)	552, 965
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	6 cut(s)	105, 298, 305, 573, 810, 820
AhlI	ACTAGT	1 cut(s)	1220
AjiI	CACGTC	2 cut(s)	143, 922
AjnI	CCWGG	2 cut(s)	152, 362
AjuI	GAANNNNNNNTTGG	4 cut(s)	19, 51, 970, 1002
AloI	GAACNNNNNNTCC	2 cut(s)	1210, 1242
AluBI	AGCT	8 cut(s)	57, 294, 418, 832, 930, 966, 1058, 1081
AluI	AGCT	8 cut(s)	57, 294, 418, 832, 930, 966, 1058, 1081
Alw21I	GWGCWC	3 cut(s)	213, 802, 1216
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	1235
ApeKI	GCWGC	4 cut(s)	222, 1175, 1187, 1190
ApoI	RAATTY	2 cut(s)	758, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AseI	ATTAAT	1 cut(s)	683
Asp700I	GAANNNNTTC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	204, 285
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	5 cut(s)	90, 129, 465, 558, 869
AsuII	TTCGAA	1 cut(s)	936
AvaII	GGWCC	2 cut(s)	204, 285
BanI	GGYRCC	1 cut(s)	1252
BbsI	GAAGAC	1 cut(s)	1217
Bbv12I	GWGCWC	3 cut(s)	213, 802, 1216
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	234, 1162, 1174, 1177
BccI	CCATC	3 cut(s)	587, 611, 857
BciT130I	CCWGG	2 cut(s)	154, 364
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	1220
BfaI	CTAG	3 cut(s)	890, 1085, 1221
BfmI	CTRYAG	1 cut(s)	1198
BisI	GCNGC	4 cut(s)	223, 1176, 1188, 1191
BlsI	GCNGC	4 cut(s)	224, 1177, 1189, 1192
Bme1390I	CCNGG	3 cut(s)	154, 194, 364
Bme18I	GGWCC	2 cut(s)	204, 285
BmgBI	CACGTC	2 cut(s)	143, 922
BmgT120I	GGNCC	2 cut(s)	204, 285
BmiI	GGNNCC	2 cut(s)	900, 1254
BmrFI	CCNGG	3 cut(s)	154, 194, 364
BmsI	GCATC	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	1217
BpmI	CTGGAG	2 cut(s)	978, 1122
Bpu10I	CCTNAGC	2 cut(s)	264, 459
Bpu14I	TTCGAA	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	899, 1164
BpuMI	CCSGG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	622
BsaJI	CCNNGG	3 cut(s)	362, 363, 852
BsaWI	WCCGGW	2 cut(s)	201, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	321, 594, 995
BseBI	CCWGG	2 cut(s)	154, 364
BseDI	CCNNGG	3 cut(s)	362, 363, 852
BseGI	GGATG	6 cut(s)	391, 562, 598, 721, 872, 964
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	6 cut(s)	450, 726, 765, 917, 1050, 1068
BseNI	ACTGG	3 cut(s)	321, 594, 995
BseRI	GAGGAG	6 cut(s)	36, 69, 72, 428, 476, 891
BseXI	GCAGC	4 cut(s)	234, 1162, 1174, 1177
BsgI	GTGCAG	2 cut(s)	178, 570
Bsh1285I	CGRYCG	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	1252
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	3 cut(s)	213, 802, 1216
BsiSI	CCGG	5 cut(s)	194, 202, 269, 554, 667
BsiWI	CGTACG	1 cut(s)	515
BslFI	GGGAC	2 cut(s)	345, 1039
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	345, 1039
Bsp119I	TTCGAA	1 cut(s)	936
Bsp1286I	GDGCHC	3 cut(s)	213, 802, 1216
Bsp143I	GATC	3 cut(s)	279, 718, 1240
BspACI	CCGC	3 cut(s)	245, 383, 1035
BspCNI	CTCAG	6 cut(s)	451, 727, 764, 916, 1051, 1069
BspLI	GGNNCC	2 cut(s)	900, 1254
BspPI	GGATC	1 cut(s)	1235
BspT104I	TTCGAA	1 cut(s)	936
BspT107I	GGYRCC	1 cut(s)	1252
BsrI	ACTGG	3 cut(s)	321, 594, 995
BssECI	CCNNGG	3 cut(s)	362, 363, 852
BssMI	GATC	3 cut(s)	279, 718, 1240
BssNI	GRCGYC	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	852
Bst2UI	CCWGG	2 cut(s)	154, 364
Bst4CI	ACNGT	2 cut(s)	208, 1030
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstBAI	YACGTR	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	936
BstC8I	GCNNGC	1 cut(s)	1195
BstDEI	CTNAG	8 cut(s)	264, 356, 459, 735, 751, 903, 1059, 1077
BstF5I	GGATG	6 cut(s)	391, 562, 598, 721, 872, 964
BstKTI	GATC	3 cut(s)	282, 721, 1243
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	279, 718, 1240
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 605, 656, 1184
BstNI	CCWGG	2 cut(s)	154, 364
BstNSI	RCATGY	1 cut(s)	1150
BstSCI	CCNGG	3 cut(s)	152, 192, 362
BstSFI	CTRYAG	1 cut(s)	1198
BstV1I	GCAGC	4 cut(s)	234, 1162, 1174, 1177
BstV2I	GAAGAC	1 cut(s)	1217
BstX2I	RGATCY	1 cut(s)	1240
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	1240
BtrI	CACGTC	2 cut(s)	143, 922
BtsCI	GGATG	6 cut(s)	391, 562, 598, 721, 872, 964
BtsIMutI	CAGTG	3 cut(s)	587, 941, 1035
Cac8I	GCNNGC	1 cut(s)	1195
Cfr13I	GGNCC	2 cut(s)	204, 285
CpoI	CGGWCCG	1 cut(s)	204
CseI	GACGC	1 cut(s)	118
CsiI	ACCWGGT	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	516
CspI	CGGWCCG	1 cut(s)	204
CviAII	CATG	4 cut(s)	226, 629, 771, 1147
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	8 cut(s)	264, 356, 459, 735, 751, 903, 1059, 1077
DpnI	GATC	3 cut(s)	281, 720, 1242
DpnII	GATC	3 cut(s)	279, 718, 1240
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	1 cut(s)	852
Eco32I	GATATC	1 cut(s)	539
Eco47I	GGWCC	2 cut(s)	204, 285
Eco57I	CTGAAG	2 cut(s)	552, 965
EcoRII	CCWGG	2 cut(s)	152, 362
EcoRV	GATATC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	852
EcoT22I	ATGCAT	1 cut(s)	872
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	4 cut(s)	229, 632, 774, 1150
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	2 cut(s)	345, 1039
FatI	CATG	4 cut(s)	225, 628, 770, 1146
FauNDI	CATATG	2 cut(s)	746, 982
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	4 cut(s)	223, 1176, 1188, 1191
FokI	GGATG	6 cut(s)	398, 569, 605, 728, 879, 971
Fsp4HI	GCNGC	4 cut(s)	223, 1176, 1188, 1191
FspBI	CTAG	3 cut(s)	890, 1085, 1221
GluI	GCNGC	4 cut(s)	223, 1176, 1188, 1191
GsuI	CTGGAG	2 cut(s)	978, 1122
HapII	CCGG	5 cut(s)	194, 202, 269, 554, 667
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	622
Hin1II	CATG	4 cut(s)	229, 632, 774, 1150
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	5 cut(s)	194, 202, 269, 554, 667
HphI	GGTGA	5 cut(s)	90, 129, 465, 558, 869
Hpy166II	GTNNAC	4 cut(s)	16, 496, 626, 925
Hpy188I	TCNGA	5 cut(s)	93, 175, 736, 906, 1078
Hpy188III	TCNNGA	3 cut(s)	283, 890, 1085
Hpy8I	GTNNAC	4 cut(s)	16, 496, 626, 925
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	8 cut(s)	111, 141, 292, 422, 527, 579, 701, 1032
HpyCH4III	ACNGT	2 cut(s)	208, 1030
HpyCH4IV	ACGT	4 cut(s)	142, 518, 622, 921
HpyCH4V	TGCA	6 cut(s)	159, 587, 650, 842, 870, 1140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 605, 656, 1184
HpyF3I	CTNAG	8 cut(s)	264, 356, 459, 735, 751, 903, 1059, 1077
HpySE526I	ACGT	4 cut(s)	142, 518, 622, 921
Hsp92I	GRCGYC	1 cut(s)	622
Hsp92II	CATG	4 cut(s)	229, 632, 774, 1150
Kzo9I	GATC	3 cut(s)	279, 718, 1240
LmnI	GCTCC	7 cut(s)	415, 596, 779, 904, 1118, 1170, 1211
Lsp1109I	GCAGC	4 cut(s)	234, 1162, 1174, 1177
LweI	GCATC	1 cut(s)	857
MabI	ACCWGGT	1 cut(s)	152
MaeI	CTAG	3 cut(s)	890, 1085, 1221
MaeII	ACGT	4 cut(s)	142, 518, 622, 921
MaeIII	GTNAC	2 cut(s)	847, 997
MalI	GATC	3 cut(s)	281, 720, 1242
MboI	GATC	3 cut(s)	279, 718, 1240
MboII	GAAGA	8 cut(s)	63, 66, 126, 713, 872, 905, 923, 1217
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	1240
MhlI	GDGCHC	3 cut(s)	213, 802, 1216
MluCI	AATT	9 cut(s)	34, 469, 684, 758, 821, 836, 843, 915, 1004
Mph1103I	ATGCAT	1 cut(s)	872
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	3 cut(s)	332, 683, 968
MslI	CAYNNNNRTG	2 cut(s)	1145, 1261
MspA1I	CMGCKG	1 cut(s)	1058
MspI	CCGG	5 cut(s)	194, 202, 269, 554, 667
MspR9I	CCNGG	3 cut(s)	154, 194, 364
MunI	CAATTG	1 cut(s)	843
MvaI	CCWGG	2 cut(s)	154, 364
MwoI	GCNNNNNNNGC	4 cut(s)	326, 605, 656, 1184
NciI	CCSGG	1 cut(s)	194
NdeI	CATATG	2 cut(s)	746, 982
NdeII	GATC	3 cut(s)	279, 718, 1240
NlaIII	CATG	4 cut(s)	229, 632, 774, 1150
NlaIV	GGNNCC	2 cut(s)	900, 1254
NmuCI	GTSAC	1 cut(s)	847
NsiI	ATGCAT	1 cut(s)	872
NspI	RCATGY	1 cut(s)	1150
NspV	TTCGAA	1 cut(s)	936
PasI	CCCWGGG	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	1 cut(s)	176
Pfl23II	CGTACG	1 cut(s)	515
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	224, 1177, 1189, 1192
Ppu21I	YACGTR	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	683
Psp6I	CCWGG	2 cut(s)	152, 362
PspGI	CCWGG	2 cut(s)	152, 362
PspLI	CGTACG	1 cut(s)	515
PspN4I	GGNNCC	2 cut(s)	900, 1254
PspPI	GGNCC	2 cut(s)	204, 285
PsuI	RGATCY	1 cut(s)	1240
PvuII	CAGCTG	1 cut(s)	1058
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	2 cut(s)	1145, 1261
Rsr2I	CGGWCCG	1 cut(s)	204
RsrII	CGGWCCG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	332, 683, 968
SatI	GCNGC	4 cut(s)	223, 1176, 1188, 1191
Sau3AI	GATC	3 cut(s)	279, 718, 1240
Sau96I	GGNCC	2 cut(s)	204, 285
ScrFI	CCNGG	3 cut(s)	154, 194, 364
SduI	GDGCHC	3 cut(s)	213, 802, 1216
SexAI	ACCWGGT	1 cut(s)	152
SfaNI	GCATC	1 cut(s)	857
SfcI	CTRYAG	1 cut(s)	1198
SfuI	TTCGAA	1 cut(s)	936
SinI	GGWCC	2 cut(s)	204, 285
SmiMI	CAYNNNNRTG	2 cut(s)	1145, 1261
SmlI	CTYRAG	2 cut(s)	878, 1179
SmoI	CTYRAG	2 cut(s)	878, 1179
SpeI	ACTAGT	1 cut(s)	1220
Sse9I	AATT	9 cut(s)	34, 469, 684, 758, 821, 836, 843, 915, 1004
SsiI	CCGC	3 cut(s)	245, 383, 1035
SspMI	CTAG	3 cut(s)	890, 1085, 1221
StyD4I	CCNGG	3 cut(s)	152, 192, 362
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	2 cut(s)	208, 1030
TaiI	ACGT	4 cut(s)	145, 521, 625, 924
TaqI	TCGA	1 cut(s)	936
TasI	AATT	9 cut(s)	34, 469, 684, 758, 821, 836, 843, 915, 1004
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	332, 683, 968
Tru9I	TTAA	3 cut(s)	332, 683, 968
TscAI	CASTG	3 cut(s)	594, 948, 1035
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	4 cut(s)	222, 1175, 1187, 1190
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	4 cut(s)	515, 516, 645, 978
TspGWI	ACGGA	1 cut(s)	923
TspRI	CASTG	3 cut(s)	594, 948, 1035
VpaK11BI	GGWCC	2 cut(s)	204, 285
VspI	ATTAAT	1 cut(s)	683
XapI	RAATTY	2 cut(s)	758, 836
XbaI	TCTAGA	2 cut(s)	889, 1084
XceI	RCATGY	1 cut(s)	1150
XmiI	GTMKAC	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	3 cut(s)	890, 1085, 1221
ZraI	GACGTC	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.