Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004679

Physical Location & Seq

Genomic Coordinates Reverse (-)

48189571 .. 48194829

Gene Structure 5259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCGTCCTCCGATTCGCTTCCCCCTCCCCCTCTCCCGGAAAACCGGACCGTGCTCGGTGTGGGCAGCATGGGGCTGGATTTCTTGGCCGTCGTGTCCTCTTATCCTAAGCCGGACGATAAGATCAGGACCACCAGCTTGAAGGTTCAAGGAGGTGGAAATGCCAGTAATGCTTTAACTTGTGTGGCTCGTTTGGGGCTAAGTCCCAGGGTCATTTCCAAGGTTGCGGATGATACACAAGGCAGGGGTATACTGGAGGAGCTACAAGCCGAAGGCGTAGATACTTCGTTTGCTGTGGTTGCTGAGGAGGGTAATTCACCATTTACCTACATTATTGTTGACAATGAAACGAATACTCGTACGTGTATTCATACTGAAGGATATCCTCCTATGATACCGGATGACCTTTCACCTTCAAGTTTATCGTCTGCACTGGATGGAACAAGACTTGCTTATTTTGATGGACGTCTACATGAAACTGCTTTACTTGTTGCACAGGAGGCTACTCGCCGGAACATACCTATATTAATTGAGGCTGAAAGGATAAGAGAAGGGTTGGATGATCTTCTAAACTTGTCTGAGTATGCCATATGCTCAGCAAAATTTCCAAAGGCATGGACAGGAGCAGAAACTTTTCCAAGTGCTCTTGTTTCAATGCTTTTGAAATTGCCAAAGCTCAAATTTGCAATTGTGACCTTGGGTGAAGATGGATGCATAATGCTTGAGAGAAATCTAGAAGAGGCTCCTCAGACGGAAGAAATTGACGTGGACAGCTTATTCGAAGCGCTGAAGCAGAGAAAGGATGACAGCTTAACCAAACCAACATATATTTCATCTCCAATTACAAAATTGAGAGCCAATGGAATAGGGACAGTGTGTGGAAGGTTGTTTGTGGGAACAGCTGAGAAAATACCACCCTCTGAGCTTGTAGATACAACGGGTGCTGGAGATAGTTTTATTGGAGCAGTAATTTATGCTGTTTGCAACAACATGCCACCAGAGAAAATGCTCCCTTTTGCTGCTCAAGTGGCTGCTGCCTGCTGTAGAGGTTTGGGAGCACGAACTAGTCTTCCACACCTCACAGATCCACTCTTGGCACCATTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

369

Amino Acids

39.49

Weight (kDa)

4.79

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	19 - 244	2.7e-21	pfkB family carbohydrate kinase
PfkB	PF00294	301 - 359	2e-13	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28706 AT4G28706 AT4G28706 AT4G28706 AT5G43910 AT5G43910 AT5G43910 AT5G43910 AT5G43910
fragaria_vesca	FvH4_2g20180 FvH4_2g20180 FvH4_2g20180 FvH4_2g20180
malus_domestica	MD05G1185300.v1.1 MD10G1173500.v1.1
prunus_persica	Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1
pyrus_communis	pycom05g17010 pycom10g14960
rosa_chinensis	RchiOBHm_Chr6g0285941
rosa_laevigata	RLG00000012595
rosa_multiflora	Rmu_sc0004808.1_g000008
rosa_roxburghii	Rroxscaffold_7G00182580
rosa_rugosa	Rorug06G0177600 Rorug06G0177600
rosa_samantha	Rh6AG289700 Rh6BG291600 Rh6CG292500 Rh6DG284600
rosa_wichuraiana	Rw6G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	1096
AccI	GTMKAC	2 cut(s)	250, 469
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	1079
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	602, 680
AcuI	CTGAAG	2 cut(s)	396, 809
AcyI	GRCGYC	1 cut(s)	466
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	786
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	142, 149, 417, 654, 664
AhlI	ACTAGT	1 cut(s)	1064
AjiI	CACGTC	1 cut(s)	766
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	814, 846
AloI	GAACNNNNNNTCC	2 cut(s)	1054, 1086
AluBI	AGCT	7 cut(s)	138, 262, 676, 774, 810, 902, 925
AluI	AGCT	7 cut(s)	138, 262, 676, 774, 810, 902, 925
Alw21I	GWGCWC	3 cut(s)	57, 646, 1060
AlwI	GGATC	1 cut(s)	1079
Aor51HI	AGCGCT	1 cut(s)	786
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	4 cut(s)	66, 1019, 1031, 1034
ApoI	RAATTY	2 cut(s)	602, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
AseI	ATTAAT	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	2 cut(s)	48, 129
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	309, 402, 713
AsuII	TTCGAA	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	48, 129
BanI	GGYRCC	1 cut(s)	1096
BbsI	GAAGAC	1 cut(s)	1061
Bbv12I	GWGCWC	3 cut(s)	57, 646, 1060
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	4 cut(s)	78, 1006, 1018, 1021
BccI	CCATC	3 cut(s)	431, 455, 701
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	1064
BfaI	CTAG	2 cut(s)	734, 1065
BfmI	CTRYAG	1 cut(s)	1042
BfoI	RGCGCY	1 cut(s)	788
BisI	GCNGC	4 cut(s)	67, 1020, 1032, 1035
BlpI	GCTNAGC	1 cut(s)	595
BlsI	GCNGC	4 cut(s)	68, 1021, 1033, 1036
Bme1390I	CCNGG	2 cut(s)	38, 208
Bme18I	GGWCC	2 cut(s)	48, 129
BmgBI	CACGTC	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	48, 129
BmiI	GGNNCC	2 cut(s)	744, 1098
BmrFI	CCNGG	2 cut(s)	38, 208
BmsI	GCATC	1 cut(s)	701
BpiI	GAAGAC	1 cut(s)	1061
BpmI	CTGGAG	2 cut(s)	275, 966
Bpu10I	CCTNAGC	2 cut(s)	108, 303
Bpu1102I	GCTNAGC	1 cut(s)	595
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	743, 1008
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	206, 207, 219, 696
BsaWI	WCCGGW	2 cut(s)	45, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	165, 258, 438
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	4 cut(s)	206, 207, 219, 696
BseGI	GGATG	6 cut(s)	235, 406, 442, 565, 716, 808
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	6 cut(s)	294, 570, 609, 761, 894, 912
BseNI	ACTGG	3 cut(s)	165, 258, 438
BseRI	GAGGAG	3 cut(s)	272, 320, 735
BseXI	GCAGC	4 cut(s)	78, 1006, 1018, 1021
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	1096
BsiHKAI	GWGCWC	3 cut(s)	57, 646, 1060
BsiSI	CCGG	5 cut(s)	38, 46, 113, 398, 511
BsiWI	CGTACG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	189, 883
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	189, 883
BsnI	GGCC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1286I	GDGCHC	3 cut(s)	57, 646, 1060
Bsp143I	GATC	3 cut(s)	123, 562, 1084
Bsp1720I	GCTNAGC	1 cut(s)	595
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	6 cut(s)	295, 571, 608, 760, 895, 913
BspLI	GGNNCC	2 cut(s)	744, 1098
BspPI	GGATC	1 cut(s)	1079
BspT104I	TTCGAA	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	1096
BsrI	ACTGG	3 cut(s)	165, 258, 438
BssECI	CCNNGG	4 cut(s)	206, 207, 219, 696
BssMI	GATC	3 cut(s)	123, 562, 1084
BssNAI	GTATAC	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	466
BssT1I	CCWWGG	2 cut(s)	219, 696
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	2 cut(s)	52, 874
Bst6I	CTCTTC	1 cut(s)	732
BstACI	GRCGYC	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	363
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	1039
BstDEI	CTNAG	8 cut(s)	108, 200, 303, 579, 595, 747, 903, 921
BstF5I	GGATG	6 cut(s)	235, 406, 442, 565, 716, 808
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	3 cut(s)	126, 565, 1087
BstMBI	GATC	3 cut(s)	123, 562, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 299, 500, 1028
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	994
BstSCI	CCNGG	2 cut(s)	36, 206
BstSFI	CTRYAG	1 cut(s)	1042
BstV1I	GCAGC	4 cut(s)	78, 1006, 1018, 1021
BstV2I	GAAGAC	1 cut(s)	1061
BstX2I	RGATCY	1 cut(s)	1084
BstXI	CCANNNNNNTGG	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	1084
BstZ17I	GTATAC	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	766
BtsCI	GGATG	6 cut(s)	235, 406, 442, 565, 716, 808
BtsIMutI	CAGTG	2 cut(s)	431, 879
Cac8I	GCNNGC	1 cut(s)	1039
CfoI	GCGC	1 cut(s)	787
Cfr13I	GGNCC	2 cut(s)	48, 129
CpoI	CGGWCCG	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	360
CspI	CGGWCCG	1 cut(s)	48
CviAII	CATG	4 cut(s)	70, 473, 615, 991
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	8 cut(s)	108, 200, 303, 579, 595, 747, 903, 921
DpnI	GATC	3 cut(s)	125, 564, 1086
DpnII	GATC	3 cut(s)	123, 562, 1084
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Eco130I	CCWWGG	2 cut(s)	219, 696
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	48, 129
Eco47III	AGCGCT	1 cut(s)	786
Eco57I	CTGAAG	2 cut(s)	396, 809
EcoRII	CCWGG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	219, 696
EcoT22I	ATGCAT	1 cut(s)	716
ErhI	CCWWGG	2 cut(s)	219, 696
FaeI	CATG	4 cut(s)	73, 476, 618, 994
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	2 cut(s)	189, 883
FatI	CATG	4 cut(s)	69, 472, 614, 990
FauNDI	CATATG	1 cut(s)	590
FblI	GTMKAC	2 cut(s)	250, 469
Fnu4HI	GCNGC	4 cut(s)	67, 1020, 1032, 1035
FokI	GGATG	6 cut(s)	242, 413, 449, 572, 723, 815
Fsp4HI	GCNGC	4 cut(s)	67, 1020, 1032, 1035
FspBI	CTAG	2 cut(s)	734, 1065
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	4 cut(s)	67, 1020, 1032, 1035
GsuI	CTGGAG	2 cut(s)	275, 966
HaeII	RGCGCY	1 cut(s)	788
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	5 cut(s)	38, 46, 113, 398, 511
HhaI	GCGC	1 cut(s)	787
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	4 cut(s)	73, 476, 618, 994
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	5 cut(s)	38, 46, 113, 398, 511
HphI	GGTGA	3 cut(s)	309, 402, 713
Hpy166II	GTNNAC	4 cut(s)	251, 340, 470, 769
Hpy188I	TCNGA	4 cut(s)	13, 580, 750, 922
Hpy188III	TCNNGA	2 cut(s)	127, 734
Hpy8I	GTNNAC	4 cut(s)	251, 340, 470, 769
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	6 cut(s)	136, 266, 371, 423, 545, 876
HpyCH4III	ACNGT	2 cut(s)	52, 874
HpyCH4IV	ACGT	3 cut(s)	362, 466, 765
HpyCH4V	TGCA	5 cut(s)	431, 494, 686, 714, 984
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 299, 500, 1028
HpyF3I	CTNAG	8 cut(s)	108, 200, 303, 579, 595, 747, 903, 921
HpySE526I	ACGT	3 cut(s)	362, 466, 765
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	4 cut(s)	73, 476, 618, 994
HspAI	GCGC	1 cut(s)	785
Kzo9I	GATC	3 cut(s)	123, 562, 1084
LmnI	GCTCC	6 cut(s)	259, 623, 748, 962, 1014, 1055
Lsp1109I	GCAGC	4 cut(s)	78, 1006, 1018, 1021
LweI	GCATC	1 cut(s)	701
MaeI	CTAG	2 cut(s)	734, 1065
MaeII	ACGT	3 cut(s)	362, 466, 765
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	3 cut(s)	125, 564, 1086
MboI	GATC	3 cut(s)	123, 562, 1084
MboII	GAAGA	5 cut(s)	557, 716, 749, 767, 1061
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	1 cut(s)	1084
MhlI	GDGCHC	3 cut(s)	57, 646, 1060
MmeI	TCCRAC	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	176, 527, 812
MslI	CAYNNNNRTG	1 cut(s)	1105
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	5 cut(s)	38, 46, 113, 398, 511
MspR9I	CCNGG	2 cut(s)	38, 208
MunI	CAATTG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	4 cut(s)	170, 299, 500, 1028
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	3 cut(s)	123, 562, 1084
NlaIII	CATG	4 cut(s)	73, 476, 618, 994
NlaIV	GGNNCC	2 cut(s)	744, 1098
NmuCI	GTSAC	1 cut(s)	691
NsiI	ATGCAT	1 cut(s)	716
NspI	RCATGY	1 cut(s)	994
NspV	TTCGAA	1 cut(s)	780
PasI	CCCWGGG	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	14
Pfl23II	CGTACG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	68, 1021, 1033, 1036
Ppu21I	YACGTR	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspLI	CGTACG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	744, 1098
PspPI	GGNCC	2 cut(s)	48, 129
PsuI	RGATCY	1 cut(s)	1084
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	1105
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	176, 527, 812
SatI	GCNGC	4 cut(s)	67, 1020, 1032, 1035
Sau3AI	GATC	3 cut(s)	123, 562, 1084
Sau96I	GGNCC	2 cut(s)	48, 129
ScrFI	CCNGG	2 cut(s)	38, 208
SduI	GDGCHC	3 cut(s)	57, 646, 1060
SfaNI	GCATC	1 cut(s)	701
SfcI	CTRYAG	1 cut(s)	1042
SfuI	TTCGAA	1 cut(s)	780
SinI	GGWCC	2 cut(s)	48, 129
SmiMI	CAYNNNNRTG	1 cut(s)	1105
SmlI	CTYRAG	2 cut(s)	722, 1023
SmoI	CTYRAG	2 cut(s)	722, 1023
SpeI	ACTAGT	1 cut(s)	1064
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	734, 1065
StyD4I	CCNGG	2 cut(s)	36, 206
StyI	CCWWGG	2 cut(s)	219, 696
TaaI	ACNGT	2 cut(s)	52, 874
TaiI	ACGT	3 cut(s)	365, 469, 768
TaqI	TCGA	1 cut(s)	780
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	176, 527, 812
Tru9I	TTAA	3 cut(s)	176, 527, 812
TscAI	CASTG	2 cut(s)	438, 879
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	4 cut(s)	66, 1019, 1031, 1034
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	4 cut(s)	359, 360, 489, 822
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	2 cut(s)	438, 879
VpaK11BI	GGWCC	2 cut(s)	48, 129
VspI	ATTAAT	1 cut(s)	527
XapI	RAATTY	2 cut(s)	602, 680
XbaI	TCTAGA	1 cut(s)	733
XceI	RCATGY	1 cut(s)	994
XmiI	GTMKAC	2 cut(s)	250, 469
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	734, 1065
ZraI	GACGTC	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.