Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004679

Physical Location & Seq

Genomic Coordinates Reverse (-)

19580643 .. 19585236

Gene Structure 4594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCTCTCTCTTTACCCAACTGCCAATGCCACTTCCCTCAGCTCACCAACCACCTTCTCACCTCGCTCAACCAGGTTCAGAATGTCGCACGGTTCTCTTCCCCCTCTCCCCGAAAACCGAATCGTCCTCAGCGTCGGCACGGTGGTCGTCGATTTCTTGGCCGCCGTGGCCTCTTACCCTAATCCGGACGACAAAATCAGAACCACCAGCTTAAAGGTTCAAGGAGGTGGAAACGCGGGTAATGCTTTAATTTGTGCAGCTCGTTTGGGCTTAAGTCCGAGACTGATTTCCAAGGTTGCAAATGATACACAAGGCAGGGGCATACTGGAGGAGCTACAAGCCGACGGCGTAGATACTTCTTCTGTTGTGGTTTCCGAGGAGGGTAATTCACCATTTACCTACATTATTGTTGACAATGAAACGAAAACTCGCACTTGTATTCATACTCCAGGATATCCTCCCATGATACCAAGCGACCTTTCCCAAACAAGTTTATCATCTGCATTGGATGGAGCAAGAGTGCTTTATTTAGATGGACGAATACATGAAACTGCTTTACTTGTTGCACAGGAGGCTGCTCGCAAGTATGTACCTATATTAGTTGAAGGTGAACGGATAAGAGAAGGGCTGGATGATCTTCTAAAACTAGCTGATTATGCTATATGCTCAGCGAAATTTCCACAGGCATGGACAGAAGCAGCATCCGTTCCGAGTGCTCTTGTTTCGATTCTTGTGAGATTGCCAAAGATTAAATTTGTGATTGTGACATTGGGTGAAGATGGATGCATAATGCTTGAGAGAAGTGTGGATGAGGCTCCTCAGACAGAAGAAATGGATGTTGATAGCTTGCTAGAATTGCTGAAGCAGAGAAAAGATGATAACATTGCTATCCCGACATGTGTTTCATCGCCTCTGACAAAATTGAGAGCCAACGGAGTAGGGACGGTTTGTGGGAGGTTGTTTGTGGGAACAGCTGAGAAAGTACCACCCTCAGAACTTCAAGATACAACAGGTGCTGGAGATAGTTTTATCGGAGCAGTTCTCTATGCTATTTGCTCCAACATGCCGCCAGAGAAAATGCTGCCATTTGCTGCTCAAGTGGCAGCTAGCTGCTGTAGGGCTTTTGGAGCTCGAACTGGTCTTCCACACCGCACAGATGCACGCCTGGCATCATTTTTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

395

Amino Acids

42.02

Weight (kDa)

5.43

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28706 AT4G28706 AT4G28706 AT4G28706 AT5G43910 AT5G43910 AT5G43910 AT5G43910 AT5G43910
fragaria_vesca	FvH4_2g20180 FvH4_2g20180 FvH4_2g20180 FvH4_2g20180
malus_domestica	MD05G1185300.v1.1 MD10G1173500.v1.1
prunus_persica	Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1 Prupe.8G212100_v2.0.a1
pyrus_communis	pycom05g17010 pycom10g14960
rosa_chinensis	RchiOBHm_Chr6g0285941
rosa_laevigata	RLG00000012595
rosa_multiflora	Rmu_sc0004808.1_g000008
rosa_roxburghii	Rroxscaffold_7G00182580
rosa_rugosa	Rorug06G0177600 Rorug06G0177600
rosa_samantha	Rh6AG289700 Rh6BG291600 Rh6CG292500 Rh6DG284600
rosa_wichuraiana	Rw6G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	162, 236, 1067, 1150
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	674, 752
AcuI	CTGAAG	1 cut(s)	881
AfaI	GTAC	2 cut(s)	591, 984
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflII	CTTAAG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	896
AgsI	TTSAA	3 cut(s)	221, 605, 1001
AjnI	CCWGG	3 cut(s)	71, 448, 1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AloI	GAACNNNNNNTCC	2 cut(s)	1126, 1158
Alw21I	GWGCWC	2 cut(s)	718, 1132
Alw26I	GTCTC	1 cut(s)	274
AlwNI	CAGNNNCTG	1 cut(s)	1016
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	159, 168
ApeKI	GCWGC	7 cut(s)	257, 575, 698, 1081, 1091, 1103, 1110
ApoI	RAATTY	2 cut(s)	674, 752
AsuHPI	GGTGA	5 cut(s)	36, 51, 381, 620, 785
AsuNHI	GCTAGC	1 cut(s)	1106
BanII	GRGCYC	1 cut(s)	1132
BbsI	GAAGAC	1 cut(s)	1133
Bbv12I	GWGCWC	2 cut(s)	718, 1132
BbvCI	CCTCAGC	2 cut(s)	38, 128
BbvI	GCAGC	7 cut(s)	269, 562, 710, 1068, 1078, 1097, 1115
BccI	CCATC	3 cut(s)	503, 527, 773
BceAI	ACGGC	2 cut(s)	149, 361
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	3 cut(s)	73, 450, 1166
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	647, 851, 1107
BfmI	CTRYAG	1 cut(s)	1114
BfrI	CTTAAG	1 cut(s)	271
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	9 cut(s)	162, 258, 576, 699, 1067, 1082, 1092, 1104, 1111
BlpI	GCTNAGC	1 cut(s)	667
BlsI	GCNGC	9 cut(s)	163, 259, 577, 700, 1068, 1083, 1093, 1105, 1112
Bme1390I	CCNGG	3 cut(s)	73, 450, 1166
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	73, 450, 1166
BmsI	GCATC	4 cut(s)	710, 773, 1147, 1178
BmtI	GCTAGC	1 cut(s)	1110
BpiI	GAAGAC	1 cut(s)	1133
BplI	GAGNNNNNCTC	2 cut(s)	1026, 1058
BpmI	CTGGAG	3 cut(s)	347, 432, 1038
Bpu10I	CCTNAGC	2 cut(s)	38, 128
Bpu1102I	GCTNAGC	1 cut(s)	667
BpuEI	CTTGAG	2 cut(s)	815, 1080
BsaJI	CCNNGG	3 cut(s)	165, 291, 375
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	330, 1141
Bse3DI	GCAATG	1 cut(s)	882
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	3 cut(s)	73, 450, 1166
BseDI	CCNNGG	3 cut(s)	165, 291, 375
BseGI	GGATG	6 cut(s)	514, 637, 701, 788, 814, 841
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	6 cut(s)	52, 142, 681, 833, 966, 1005
BseNI	ACTGG	2 cut(s)	330, 1141
BseRI	GAGGAG	3 cut(s)	344, 392, 807
BseXI	GCAGC	7 cut(s)	269, 562, 710, 1068, 1078, 1097, 1115
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	161, 170
BsiHKAI	GWGCWC	2 cut(s)	718, 1132
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	955
BsnI	GGCC	2 cut(s)	161, 170
Bsp1286I	GDGCHC	2 cut(s)	718, 1132
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	634
Bsp1720I	GCTNAGC	1 cut(s)	667
BspACI	CCGC	4 cut(s)	162, 236, 1067, 1150
BspANI	GGCC	2 cut(s)	161, 170
BspCNI	CTCAG	6 cut(s)	51, 141, 680, 832, 967, 1004
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	816
BspOI	GCTAGC	1 cut(s)	1110
BspTI	CTTAAG	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	2 cut(s)	330, 1141
BssECI	CCNNGG	3 cut(s)	165, 291, 375
BssMI	GATC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	73, 450, 1166
Bst4CI	ACNGT	3 cut(s)	92, 142, 946
Bst6I	CTCTTC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	271
BstC8I	GCNNGC	4 cut(s)	580, 848, 1108, 1162
BstDEI	CTNAG	6 cut(s)	38, 128, 667, 819, 975, 991
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	6 cut(s)	514, 637, 701, 788, 814, 841
BstFNI	CGCG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	8 cut(s)	167, 242, 572, 656, 856, 1100, 1127, 1166
BstNI	CCWGG	3 cut(s)	73, 450, 1166
BstNSI	RCATGY	2 cut(s)	900, 1066
BstSCI	CCNGG	3 cut(s)	71, 448, 1164
BstSFI	CTRYAG	1 cut(s)	1114
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	7 cut(s)	269, 562, 710, 1068, 1078, 1097, 1115
BstV2I	GAAGAC	1 cut(s)	1133
BstXI	CCANNNNNNTGG	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	161, 170
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	891
BtsCI	GGATG	6 cut(s)	514, 637, 701, 788, 814, 841
Cac8I	GCNNGC	4 cut(s)	580, 848, 1108, 1162
CaiI	CAGNNNCTG	1 cut(s)	1016
CseI	GACGC	1 cut(s)	121
CsiI	ACCWGGT	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	590, 983
CviAII	CATG	5 cut(s)	463, 545, 687, 897, 1063
CviQI	GTAC	2 cut(s)	590, 983
DdeI	CTNAG	6 cut(s)	38, 128, 667, 819, 975, 991
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	1130
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	1132
Eco32I	GATATC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	1130
Eco57I	CTGAAG	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	1130
EcoRII	CCWGG	3 cut(s)	71, 448, 1164
EcoRV	GATATC	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	788
EcoT38I	GRGCYC	1 cut(s)	1132
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	5 cut(s)	466, 548, 690, 900, 1066
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	5 cut(s)	462, 544, 686, 896, 1062
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	9 cut(s)	162, 258, 576, 699, 1067, 1082, 1092, 1104, 1111
FokI	GGATG	6 cut(s)	521, 644, 688, 795, 821, 848
FriOI	GRGCYC	1 cut(s)	1132
Fsp4HI	GCNGC	9 cut(s)	162, 258, 576, 699, 1067, 1082, 1092, 1104, 1111
FspBI	CTAG	3 cut(s)	647, 851, 1107
GluI	GCNGC	9 cut(s)	162, 258, 576, 699, 1067, 1082, 1092, 1104, 1111
GsuI	CTGGAG	3 cut(s)	347, 432, 1038
HaeIII	GGCC	2 cut(s)	161, 170
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	5 cut(s)	466, 548, 690, 900, 1066
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	120, 727
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	5 cut(s)	36, 51, 381, 620, 785
Hpy166II	GTNNAC	2 cut(s)	412, 611
Hpy188I	TCNGA	9 cut(s)	80, 200, 279, 376, 711, 822, 915, 994, 1034
Hpy188III	TCNNGA	3 cut(s)	185, 892, 1001
Hpy8I	GTNNAC	2 cut(s)	412, 611
Hpy99I	CGWCG	3 cut(s)	137, 152, 347
HpyAV	CCTTC	3 cut(s)	64, 599, 617
HpyCH4III	ACNGT	3 cut(s)	92, 142, 946
HpyCH4V	TGCA	6 cut(s)	257, 299, 503, 566, 786, 1160
HpyF10VI	GCNNNNNNNGC	8 cut(s)	167, 242, 572, 656, 856, 1100, 1127, 1166
HpyF3I	CTNAG	6 cut(s)	38, 128, 667, 819, 975, 991
Hsp92II	CATG	5 cut(s)	466, 548, 690, 900, 1066
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	6 cut(s)	331, 512, 820, 1034, 1061, 1127
Lsp1109I	GCAGC	7 cut(s)	269, 562, 710, 1068, 1078, 1097, 1115
LweI	GCATC	4 cut(s)	710, 773, 1147, 1178
MabI	ACCWGGT	1 cut(s)	71
MaeI	CTAG	3 cut(s)	647, 851, 1107
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	6 cut(s)	89, 351, 629, 788, 839, 1133
MhlI	GDGCHC	2 cut(s)	718, 1132
MluCI	AATT	6 cut(s)	249, 385, 674, 752, 854, 920
MmeI	TCCRAC	1 cut(s)	1083
Mph1103I	ATGCAT	1 cut(s)	788
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	4 cut(s)	212, 248, 272, 750
MslI	CAYNNNNRTG	1 cut(s)	685
MspA1I	CMGCKG	1 cut(s)	974
MspCI	CTTAAG	1 cut(s)	271
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	73, 450, 1166
MvaI	CCWGG	3 cut(s)	73, 450, 1166
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	8 cut(s)	167, 242, 572, 656, 856, 1100, 1127, 1166
NdeII	GATC	1 cut(s)	634
NheI	GCTAGC	1 cut(s)	1106
NlaIII	CATG	5 cut(s)	466, 548, 690, 900, 1066
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	788
NspI	RCATGY	2 cut(s)	900, 1066
PciI	ACATGT	1 cut(s)	896
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	120, 727
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	9 cut(s)	163, 259, 577, 700, 1068, 1083, 1093, 1105, 1112
PscI	ACATGT	1 cut(s)	896
Psp124BI	GAGCTC	1 cut(s)	1132
Psp6I	CCWGG	3 cut(s)	71, 448, 1164
PspGI	CCWGG	3 cut(s)	71, 448, 1164
PspN4I	GGNNCC	1 cut(s)	816
PstNI	CAGNNNCTG	1 cut(s)	1016
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	2 cut(s)	591, 984
RsaNI	GTAC	2 cut(s)	590, 983
RseI	CAYNNNNRTG	1 cut(s)	685
SacI	GAGCTC	1 cut(s)	1132
SaqAI	TTAA	4 cut(s)	212, 248, 272, 750
SatI	GCNGC	9 cut(s)	162, 258, 576, 699, 1067, 1082, 1092, 1104, 1111
Sau3AI	GATC	1 cut(s)	634
ScrFI	CCNGG	3 cut(s)	73, 450, 1166
SduI	GDGCHC	2 cut(s)	718, 1132
SexAI	ACCWGGT	1 cut(s)	71
SfaNI	GCATC	4 cut(s)	710, 773, 1147, 1178
SfcI	CTRYAG	1 cut(s)	1114
SfiI	GGCCNNNNNGGCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	685
SmlI	CTYRAG	3 cut(s)	271, 794, 1095
SmoI	CTYRAG	3 cut(s)	271, 794, 1095
Sse9I	AATT	6 cut(s)	249, 385, 674, 752, 854, 920
SsiI	CCGC	4 cut(s)	162, 236, 1067, 1150
SspMI	CTAG	3 cut(s)	647, 851, 1107
SstI	GAGCTC	1 cut(s)	1132
StyD4I	CCNGG	3 cut(s)	71, 448, 1164
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	92, 142, 946
TaqI	TCGA	3 cut(s)	150, 725, 1132
TasI	AATT	6 cut(s)	249, 385, 674, 752, 854, 920
TauI	GCSGC	2 cut(s)	164, 1069
TfiI	GAWTC	2 cut(s)	120, 727
Tru1I	TTAA	4 cut(s)	212, 248, 272, 750
Tru9I	TTAA	4 cut(s)	212, 248, 272, 750
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	7 cut(s)	257, 575, 698, 1081, 1091, 1103, 1110
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	4 cut(s)	431, 432, 561, 894
TspGWI	ACGGA	3 cut(s)	628, 694, 948
Vha464I	CTTAAG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	674, 752
XceI	RCATGY	2 cut(s)	900, 1066
XspI	CTAG	3 cut(s)	647, 851, 1107
Zsp2I	ATGCAT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.